Wall clock time and date at job start Tue Mar 31 2020 06:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00209 * 2 1 4 4 H 1.48501 * 109.47174 * 240.00286 * 3 2 1 5 5 H 1.48502 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47111 * 120.00012 * 3 2 1 7 7 C 1.37880 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00388 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.46853 * 111.00300 * 294.21446 * 10 9 7 12 12 C 1.53036 * 109.52617 * 174.15784 * 11 10 9 13 13 C 1.53123 * 109.27621 * 59.17901 * 12 11 10 14 14 C 1.53118 * 109.16322 * 302.34369 * 13 12 11 15 15 C 1.46845 * 111.00226 * 170.00339 * 10 9 7 16 16 H 1.08995 * 109.45779 * 65.83034 * 15 10 9 17 17 C 1.50706 * 109.46220 * 305.85456 * 15 10 9 18 18 C 1.34237 * 125.03282 * 324.64945 * 17 15 10 19 19 C 1.46487 * 106.99271 * 179.85790 * 18 17 15 20 20 C 1.39636 * 134.02999 * 180.10964 * 19 18 17 21 21 C 1.36622 * 119.76703 * 180.35237 * 20 19 18 22 22 C 1.38831 * 120.52672 * 359.95853 * 21 20 19 23 23 C 1.37749 * 120.66553 * 0.02562 * 22 21 20 24 24 C 1.39131 * 119.78120 * 0.02562 * 23 22 21 25 25 N 1.36824 * 125.03369 * 144.94190 * 17 15 10 26 26 H 0.97000 * 125.06846 * 0.02562 * 25 17 15 27 27 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46987 * 60.00248 * 9 7 2 29 29 H 1.08995 * 109.47378 * 300.00089 * 9 7 2 30 30 H 1.09001 * 109.45745 * 54.14012 * 11 10 9 31 31 H 1.09002 * 109.44934 * 294.17089 * 11 10 9 32 32 H 1.08999 * 109.50084 * 299.24143 * 12 11 10 33 33 H 1.08997 * 109.50374 * 179.11789 * 12 11 10 34 34 H 1.08995 * 109.52360 * 182.44232 * 13 12 11 35 35 H 1.08997 * 109.52173 * 62.24805 * 13 12 11 36 36 H 1.09005 * 109.50503 * 297.72092 * 14 13 12 37 37 H 1.08998 * 109.53789 * 177.61508 * 14 13 12 38 38 H 1.07999 * 126.50430 * 359.96373 * 18 17 15 39 39 H 1.08004 * 120.11670 * 0.33397 * 20 19 18 40 40 H 1.07996 * 119.73682 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.66877 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.11031 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 2.9739 -3.6499 -1.2527 12 6 4.0539 -4.7302 -1.1603 13 6 3.3909 -6.0875 -0.9095 14 6 2.5580 -6.0108 0.3730 15 6 1.5214 -4.8932 0.2362 16 1 0.8598 -5.1123 -0.6018 17 6 0.7122 -4.8009 1.5042 18 6 1.0717 -4.1129 2.5993 19 6 0.0030 -4.2893 3.5856 20 6 -0.2009 -3.8295 4.8883 21 6 -1.3324 -4.1882 5.5648 22 6 -2.2821 -5.0058 4.9671 23 6 -2.1011 -5.4702 3.6830 24 6 -0.9557 -5.1184 2.9758 25 7 -0.4949 -5.4107 1.7117 26 1 -0.9569 -5.9667 1.0650 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5572 0.8896 30 1 3.4435 -2.6800 -1.4170 31 1 2.3051 -3.8750 -2.0835 32 1 4.7310 -4.4985 -0.3381 33 1 4.6139 -4.7659 -2.0948 34 1 4.1588 -6.8533 -0.7998 35 1 2.7434 -6.3374 -1.7499 36 1 3.2117 -5.7991 1.2193 37 1 2.0494 -6.9611 0.5348 38 1 1.9762 -3.5369 2.7282 39 1 0.5333 -3.1929 5.3595 40 1 -1.4895 -3.8327 6.5724 41 1 -3.1716 -5.2803 5.5144 42 1 -2.8459 -6.1054 3.2265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108385479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:25 Heat of formation + Delta-G solvation = 34.490672 kcal Electronic energy + Delta-G solvation = -22507.021122 eV Core-core repulsion = 19450.846982 eV Total energy + Delta-G solvation = -3056.174141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29043 -39.88197 -37.63777 -35.45407 -33.76687 -32.94683 -32.28143 -30.21248 -29.07965 -28.73621 -25.67638 -24.57703 -23.19674 -22.78572 -22.21301 -21.32809 -20.24820 -18.66291 -18.39492 -17.26811 -16.94771 -16.30784 -15.83961 -15.65328 -15.44889 -15.08870 -15.02077 -14.71942 -14.50158 -14.27765 -14.07962 -13.78751 -13.72340 -13.28271 -13.01264 -12.70272 -12.58197 -12.50677 -12.44667 -12.12116 -11.99004 -11.70904 -11.65788 -11.51272 -11.29583 -11.01096 -10.64116 -10.44839 -9.03732 -9.01095 -8.50458 -8.18231 -6.27290 0.25833 0.77589 1.38998 1.42800 1.50146 1.80812 2.15647 2.40472 3.06079 3.14379 3.28187 3.65358 3.88558 3.97001 4.11727 4.14694 4.24187 4.31822 4.36933 4.38799 4.54904 4.61010 4.63413 4.70578 4.87825 4.93552 5.00572 5.06772 5.11058 5.19621 5.20359 5.22899 5.25514 5.31101 5.44062 5.53826 5.61030 5.65251 5.74752 5.91111 5.94135 6.10578 6.30476 6.36724 6.64147 6.74302 6.88743 7.41354 8.92674 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.006665 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.105110 B = 4200.093699 C = 6076.409094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.526 5.526 11 C 0.063 3.937 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.096 4.096 15 C 0.146 3.854 16 H 0.031 0.969 17 C 0.089 3.911 18 C -0.191 4.191 19 C -0.139 4.139 20 C -0.093 4.093 21 C -0.151 4.151 22 C -0.103 4.103 23 C -0.137 4.137 24 C 0.081 3.919 25 N -0.588 5.588 26 H 0.422 0.578 27 H 0.261 0.739 28 H -0.055 1.055 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.013 0.987 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -14.749 4.399 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.251 5.251 11 C -0.065 4.065 12 C -0.148 4.148 13 C -0.149 4.149 14 C -0.134 4.134 15 C 0.036 3.964 16 H 0.049 0.951 17 C -0.019 4.019 18 C -0.216 4.216 19 C -0.144 4.144 20 C -0.111 4.111 21 C -0.170 4.170 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.027 4.027 25 N -0.193 5.193 26 H 0.260 0.740 27 H 0.070 0.930 28 H -0.037 1.037 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.694 -14.633 4.656 15.372 hybrid contribution -0.713 1.119 -1.154 1.759 sum -0.019 -13.514 3.502 13.960 Atomic orbital electron populations 1.70104 1.07792 1.27638 1.52008 1.25885 0.95642 1.03091 0.95014 0.85495 0.78188 0.78157 0.79147 1.19011 1.21081 1.19413 1.21412 0.93505 0.91044 1.49670 0.91869 1.19419 0.90173 0.88701 0.93452 1.61932 1.26459 1.01481 1.35198 1.22030 0.95540 1.00118 0.88815 1.21606 0.96866 0.93727 1.02558 1.21572 0.99431 0.97349 0.96578 1.21579 0.96621 0.95696 0.99505 1.20191 0.93537 0.92328 0.90306 0.95087 1.20109 0.87029 0.97922 0.96836 1.21396 1.00816 1.05953 0.93421 1.19617 0.96363 1.02352 0.96078 1.20538 0.98847 0.99330 0.92435 1.20936 0.94174 1.00597 1.01245 1.21184 0.99886 0.97209 0.93934 1.20369 0.95397 1.04413 0.95541 1.18551 0.97266 1.00634 0.86212 1.41567 1.18363 1.45915 1.13431 0.74013 0.92991 1.03736 0.96228 0.91824 0.96912 0.91541 0.89772 0.89082 0.91900 0.91419 0.90231 0.85452 0.86069 0.83561 0.82469 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.52 -30.02 8.43 25.60 0.22 -29.81 16 8 H 0.06 3.56 7.12 -2.91 -0.02 3.54 16 9 C 0.21 11.44 4.34 85.56 0.37 11.81 16 10 N -0.53 -22.77 4.19 -880.04 -3.69 -26.45 16 11 C 0.06 2.40 5.29 86.32 0.46 2.86 16 12 C -0.11 -3.03 6.09 30.65 0.19 -2.84 16 13 C -0.11 -2.60 6.00 30.68 0.18 -2.42 16 14 C -0.10 -2.64 5.36 30.65 0.16 -2.47 16 15 C 0.15 5.28 2.34 44.20 0.10 5.38 16 16 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 17 C 0.09 3.41 4.93 40.87 0.20 3.61 16 18 C -0.19 -8.08 9.00 23.51 0.21 -7.86 16 19 C -0.14 -5.42 6.37 -20.20 -0.13 -5.55 16 20 C -0.09 -3.13 10.05 22.23 0.22 -2.91 16 21 C -0.15 -4.04 9.97 22.03 0.22 -3.82 16 22 C -0.10 -2.51 10.01 22.30 0.22 -2.28 16 23 C -0.14 -3.72 10.08 22.37 0.23 -3.50 16 24 C 0.08 2.77 7.28 39.03 0.28 3.05 16 25 N -0.59 -19.48 6.07 -175.91 -1.07 -20.55 16 26 H 0.42 11.01 8.96 -92.71 -0.83 10.18 16 27 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 28 H -0.05 -3.35 8.12 -2.39 -0.02 -3.37 16 29 H 0.02 1.18 5.60 -2.39 -0.01 1.17 16 30 H 0.06 2.69 6.70 -2.39 -0.02 2.68 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.13 5.82 8.06 -2.91 -0.02 5.80 16 39 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 41 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -71.30 335.64 1.34 -69.97 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.18 Total: 23.78 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 3.60 Total: -36.21 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.47 Total: -105.08 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.30 1.34 -69.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108385479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.456 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds