Wall clock time and date at job start Tue Mar 31 2020 06:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47595 * 240.00398 * 3 2 1 5 5 H 1.48502 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47032 * 120.00161 * 3 2 1 7 7 C 1.37879 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46949 * 184.86675 * 9 7 2 11 11 C 1.46849 * 110.99843 * 300.24075 * 10 9 7 12 12 C 1.53033 * 109.52275 * 185.84279 * 11 10 9 13 13 C 1.53124 * 109.27765 * 300.81502 * 12 11 10 14 14 C 1.53118 * 109.15669 * 57.65853 * 13 12 11 15 15 C 1.46845 * 111.00287 * 64.44895 * 10 9 7 16 16 H 1.09007 * 109.46342 * 294.17741 * 15 10 9 17 17 C 1.50700 * 109.46497 * 54.15427 * 15 10 9 18 18 C 1.34235 * 125.03964 * 210.00116 * 17 15 10 19 19 C 1.46481 * 106.99855 * 179.97438 * 18 17 15 20 20 C 1.39628 * 134.03257 * 180.02562 * 19 18 17 21 21 C 1.36627 * 119.76780 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52469 * 0.02648 * 21 20 19 23 23 C 1.37747 * 120.66706 * 359.95496 * 22 21 20 24 24 C 1.39120 * 119.78051 * 0.04637 * 23 22 21 25 25 N 1.36836 * 125.02977 * 29.69921 * 17 15 10 26 26 H 0.96996 * 125.06238 * 0.02562 * 25 17 15 27 27 H 0.97001 * 120.00105 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47410 * 64.86137 * 9 7 2 29 29 H 1.09004 * 109.47305 * 304.86231 * 9 7 2 30 30 H 1.09002 * 109.45915 * 305.85097 * 11 10 9 31 31 H 1.08998 * 109.46552 * 65.82043 * 11 10 9 32 32 H 1.09008 * 109.50317 * 180.88058 * 12 11 10 33 33 H 1.09000 * 109.53883 * 60.78030 * 12 11 10 34 34 H 1.08999 * 109.52280 * 297.75230 * 13 12 11 35 35 H 1.09002 * 109.52442 * 177.56396 * 13 12 11 36 36 H 1.09004 * 109.49830 * 182.40489 * 14 13 12 37 37 H 1.08999 * 109.50392 * 62.28526 * 14 13 12 38 38 H 1.08001 * 126.49925 * 0.02562 * 18 17 15 39 39 H 1.08003 * 120.11759 * 359.96273 * 20 19 18 40 40 H 1.08000 * 119.73590 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.66740 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.10838 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2015 -3.6132 0.1164 11 6 3.1526 -3.6131 -1.0025 12 6 4.0305 -4.8643 -0.9275 13 6 4.7828 -4.8748 0.4061 14 6 3.7709 -4.8256 1.5542 15 6 2.9004 -3.5755 1.4073 16 1 3.5301 -2.6869 1.4536 17 6 1.8898 -3.5335 2.5244 18 6 2.0823 -2.9462 3.7160 19 6 0.8553 -3.1403 4.4923 20 6 0.4497 -2.7686 5.7756 21 6 -0.7962 -3.1114 6.2192 22 6 -1.6627 -3.8271 5.4041 23 6 -1.2832 -4.2036 4.1346 24 6 -0.0191 -3.8653 3.6624 25 7 0.6379 -4.0832 2.4721 26 1 0.2692 -4.5581 1.7109 27 1 -0.4850 0.8400 0.0004 28 1 0.6911 -2.5953 -0.9306 29 1 0.5611 -2.5203 0.8430 30 1 2.6047 -3.6099 -1.9448 31 1 3.7810 -2.7244 -0.9450 32 1 4.7468 -4.8561 -1.7492 33 1 3.4045 -5.7537 -0.9993 34 1 5.4388 -4.0060 0.4612 35 1 5.3763 -5.7859 0.4824 36 1 4.3016 -4.7897 2.5057 37 1 3.1403 -5.7140 1.5218 38 1 2.9726 -2.4281 4.0406 39 1 1.1187 -2.2123 6.4155 40 1 -1.1095 -2.8233 7.2118 41 1 -2.6444 -4.0911 5.7689 42 1 -1.9644 -4.7606 3.5083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108385481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:30 Heat of formation + Delta-G solvation = 49.877501 kcal Electronic energy + Delta-G solvation = -22808.959754 eV Core-core repulsion = 19753.452837 eV Total energy + Delta-G solvation = -3055.506918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87513 -38.46228 -36.27886 -33.70643 -31.85913 -31.65466 -30.86238 -28.77490 -27.76520 -26.70854 -24.03190 -23.16653 -21.75506 -21.34588 -20.84500 -19.67307 -19.06040 -17.27228 -16.31816 -15.80633 -15.26446 -14.74343 -14.40902 -14.20785 -14.07918 -13.68526 -13.47503 -13.26384 -13.23863 -12.88533 -12.57434 -12.40891 -11.80427 -11.76339 -11.24614 -11.19290 -11.09859 -10.97661 -10.73093 -10.54250 -10.48327 -10.44599 -10.17747 -9.98473 -9.84719 -9.51352 -9.19378 -8.44000 -7.59806 -7.36681 -7.13049 -6.04781 -4.13195 1.59451 2.10403 3.27570 3.29904 3.33154 3.34637 3.73371 4.37945 4.39509 4.72464 5.11287 5.20417 5.23530 5.27337 5.35900 5.38577 5.45317 5.63705 5.72011 5.84218 5.86579 5.93536 6.01006 6.05849 6.18060 6.25262 6.27149 6.32803 6.37918 6.46737 6.51151 6.54580 6.64300 6.79183 6.87314 7.00118 7.14499 7.25756 7.36915 7.45361 7.69517 7.84019 7.94890 8.14284 8.16818 8.22952 8.93821 9.53601 11.01082 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.007274 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.495236 B = 3848.294399 C = 5370.156957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.549 4.549 8 H 0.055 0.945 9 C 0.178 3.822 10 N -0.542 5.542 11 C 0.065 3.935 12 C -0.119 4.119 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.147 3.853 16 H 0.070 0.930 17 C 0.140 3.860 18 C -0.220 4.220 19 C -0.099 4.099 20 C -0.076 4.076 21 C -0.156 4.156 22 C -0.113 4.113 23 C -0.126 4.126 24 C 0.097 3.903 25 N -0.572 5.572 26 H 0.418 0.582 27 H 0.263 0.737 28 H 0.026 0.974 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -9.888 6.087 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.588 4.588 8 H 0.073 0.927 9 C 0.053 3.947 10 N -0.267 5.267 11 C -0.064 4.064 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.146 4.146 15 C 0.037 3.963 16 H 0.088 0.912 17 C 0.031 3.969 18 C -0.244 4.244 19 C -0.104 4.104 20 C -0.095 4.095 21 C -0.175 4.175 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.012 4.012 25 N -0.174 5.174 26 H 0.256 0.744 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.955 -10.266 5.923 12.215 hybrid contribution 0.598 1.811 -0.410 1.951 sum 3.553 -8.456 5.513 10.701 Atomic orbital electron populations 1.69916 1.06000 1.26938 1.49681 1.24914 0.94718 0.99057 0.94738 0.86740 0.79761 0.83468 0.78581 1.20321 1.21212 1.20167 1.21574 0.93076 0.91939 1.52253 0.92653 1.19929 0.91068 0.85670 0.98077 1.62505 1.17220 1.46992 0.99990 1.21855 0.94116 0.95791 0.94588 1.21658 0.98180 0.99303 0.96508 1.21544 0.97542 1.01159 0.95242 1.21641 0.97014 0.97930 0.97994 1.20178 0.91398 0.97464 0.87232 0.91235 1.20100 0.85482 0.95927 0.95436 1.21232 0.98763 1.10007 0.94446 1.19159 0.94798 1.01915 0.94558 1.20183 0.96084 0.99228 0.93997 1.20467 0.94619 1.02540 0.99902 1.20629 0.99199 0.99856 0.93557 1.19968 0.93548 1.04435 0.96767 1.18240 0.94496 1.01310 0.87107 1.41778 1.12729 1.49435 1.13443 0.74408 0.92777 0.95615 0.93729 0.91452 0.94037 0.92422 0.91888 0.92269 0.92438 0.91857 0.91779 0.84409 0.86735 0.86830 0.86514 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.55 -14.72 7.73 -34.44 -0.27 -14.98 16 8 H 0.06 1.47 5.85 -52.49 -0.31 1.16 16 9 C 0.18 4.37 4.70 -4.98 -0.02 4.34 16 10 N -0.54 -10.69 4.45 -229.52 -1.02 -11.71 16 11 C 0.06 1.17 5.04 -3.83 -0.02 1.15 16 12 C -0.12 -1.68 6.09 -26.65 -0.16 -1.84 16 13 C -0.12 -1.57 6.00 -26.61 -0.16 -1.73 16 14 C -0.11 -1.59 5.35 -26.65 -0.14 -1.74 16 15 C 0.15 2.70 1.92 -68.88 -0.13 2.57 16 16 H 0.07 1.43 7.03 -51.92 -0.37 1.07 16 17 C 0.14 2.69 4.76 -81.77 -0.39 2.30 16 18 C -0.22 -4.22 10.95 -37.67 -0.41 -4.63 16 19 C -0.10 -1.87 6.37 -105.14 -0.67 -2.54 16 20 C -0.08 -1.25 10.05 -39.65 -0.40 -1.65 16 21 C -0.16 -2.29 9.97 -39.94 -0.40 -2.69 16 22 C -0.11 -1.65 10.01 -39.54 -0.40 -2.05 16 23 C -0.13 -2.04 10.08 -39.43 -0.40 -2.44 16 24 C 0.10 1.79 7.28 -83.99 -0.61 1.18 16 25 N -0.57 -10.62 4.67 -6.95 -0.03 -10.65 16 26 H 0.42 7.31 8.62 -40.82 -0.35 6.95 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 1.18 5.76 -51.93 -0.30 0.88 16 30 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 31 H 0.04 0.82 6.57 -51.93 -0.34 0.48 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -29.59 332.58 -11.30 -40.89 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.29 Total: 8.24 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -4.68 Total: -22.91 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.32 Total: -47.75 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.59 -11.30 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108385481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.763 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds