Wall clock time and date at job start Tue Mar 31 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47595 * 240.00398 * 3 2 1 5 5 H 1.48502 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47032 * 120.00161 * 3 2 1 7 7 C 1.37879 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99708 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46949 * 184.86675 * 9 7 2 11 11 C 1.46849 * 110.99843 * 300.24075 * 10 9 7 12 12 C 1.53033 * 109.52275 * 185.84279 * 11 10 9 13 13 C 1.53124 * 109.27765 * 300.81502 * 12 11 10 14 14 C 1.53118 * 109.15669 * 57.65853 * 13 12 11 15 15 C 1.46845 * 111.00287 * 64.44895 * 10 9 7 16 16 H 1.09007 * 109.46342 * 294.17741 * 15 10 9 17 17 C 1.50700 * 109.46497 * 54.15427 * 15 10 9 18 18 C 1.34235 * 125.03964 * 210.00116 * 17 15 10 19 19 C 1.46481 * 106.99855 * 179.97438 * 18 17 15 20 20 C 1.39628 * 134.03257 * 180.02562 * 19 18 17 21 21 C 1.36627 * 119.76780 * 179.97438 * 20 19 18 22 22 C 1.38830 * 120.52469 * 0.02648 * 21 20 19 23 23 C 1.37747 * 120.66706 * 359.95496 * 22 21 20 24 24 C 1.39120 * 119.78051 * 0.04637 * 23 22 21 25 25 N 1.36836 * 125.02977 * 29.69921 * 17 15 10 26 26 H 0.96996 * 125.06238 * 0.02562 * 25 17 15 27 27 H 0.97001 * 120.00105 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47410 * 64.86137 * 9 7 2 29 29 H 1.09004 * 109.47305 * 304.86231 * 9 7 2 30 30 H 1.09002 * 109.45915 * 305.85097 * 11 10 9 31 31 H 1.08998 * 109.46552 * 65.82043 * 11 10 9 32 32 H 1.09008 * 109.50317 * 180.88058 * 12 11 10 33 33 H 1.09000 * 109.53883 * 60.78030 * 12 11 10 34 34 H 1.08999 * 109.52280 * 297.75230 * 13 12 11 35 35 H 1.09002 * 109.52442 * 177.56396 * 13 12 11 36 36 H 1.09004 * 109.49830 * 182.40489 * 14 13 12 37 37 H 1.08999 * 109.50392 * 62.28526 * 14 13 12 38 38 H 1.08001 * 126.49925 * 0.02562 * 18 17 15 39 39 H 1.08003 * 120.11759 * 359.96273 * 20 19 18 40 40 H 1.08000 * 119.73590 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.66740 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.10838 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2015 -3.6132 0.1164 11 6 3.1526 -3.6131 -1.0025 12 6 4.0305 -4.8643 -0.9275 13 6 4.7828 -4.8748 0.4061 14 6 3.7709 -4.8256 1.5542 15 6 2.9004 -3.5755 1.4073 16 1 3.5301 -2.6869 1.4536 17 6 1.8898 -3.5335 2.5244 18 6 2.0823 -2.9462 3.7160 19 6 0.8553 -3.1403 4.4923 20 6 0.4497 -2.7686 5.7756 21 6 -0.7962 -3.1114 6.2192 22 6 -1.6627 -3.8271 5.4041 23 6 -1.2832 -4.2036 4.1346 24 6 -0.0191 -3.8653 3.6624 25 7 0.6379 -4.0832 2.4721 26 1 0.2692 -4.5581 1.7109 27 1 -0.4850 0.8400 0.0004 28 1 0.6911 -2.5953 -0.9306 29 1 0.5611 -2.5203 0.8430 30 1 2.6047 -3.6099 -1.9448 31 1 3.7810 -2.7244 -0.9450 32 1 4.7468 -4.8561 -1.7492 33 1 3.4045 -5.7537 -0.9993 34 1 5.4388 -4.0060 0.4612 35 1 5.3763 -5.7859 0.4824 36 1 4.3016 -4.7897 2.5057 37 1 3.1403 -5.7140 1.5218 38 1 2.9726 -2.4281 4.0406 39 1 1.1187 -2.2123 6.4155 40 1 -1.1095 -2.8233 7.2118 41 1 -2.6444 -4.0911 5.7689 42 1 -1.9644 -4.7606 3.5083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108385481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:29 Heat of formation + Delta-G solvation = 33.496619 kcal Electronic energy + Delta-G solvation = -22809.670083 eV Core-core repulsion = 19753.452837 eV Total energy + Delta-G solvation = -3056.217246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24599 -39.89492 -37.55203 -35.48803 -33.65744 -33.00506 -32.19199 -30.08015 -29.16074 -28.54264 -25.75250 -24.50802 -23.24014 -22.79320 -22.15734 -21.04805 -20.53610 -18.77192 -18.15845 -17.26056 -16.78843 -16.27357 -15.93924 -15.70096 -15.43416 -14.94456 -14.93153 -14.70338 -14.54366 -14.32398 -14.26040 -13.74410 -13.42653 -13.14880 -12.95508 -12.92367 -12.46914 -12.42966 -12.34064 -12.16091 -12.06654 -11.87155 -11.68813 -11.51589 -11.28633 -11.07870 -10.59922 -10.52274 -9.11765 -8.93164 -8.49572 -8.17208 -6.34336 0.31083 0.83438 1.32416 1.34233 1.41200 1.87100 2.34567 2.35818 3.09416 3.10170 3.21804 3.74422 3.95410 4.00823 4.16351 4.24183 4.28023 4.38277 4.41067 4.50450 4.59029 4.64736 4.73282 4.76843 4.89415 4.98779 5.06177 5.08465 5.13282 5.13791 5.24407 5.25822 5.27253 5.31138 5.37372 5.52206 5.63782 5.72713 5.76841 5.93500 5.96221 6.05766 6.22544 6.37998 6.50246 6.78026 6.84543 7.36246 8.85333 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.007274 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.495236 B = 3848.294399 C = 5370.156957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.108 4.108 13 C -0.114 4.114 14 C -0.099 4.099 15 C 0.151 3.849 16 H 0.044 0.956 17 C 0.123 3.877 18 C -0.240 4.240 19 C -0.130 4.130 20 C -0.091 4.091 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.142 4.142 24 C 0.072 3.928 25 N -0.575 5.575 26 H 0.418 0.582 27 H 0.262 0.738 28 H -0.004 1.004 29 H 0.024 0.976 30 H 0.057 0.943 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -10.715 7.215 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.067 3.933 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.146 4.146 13 C -0.151 4.151 14 C -0.137 4.137 15 C 0.041 3.959 16 H 0.061 0.939 17 C 0.013 3.987 18 C -0.265 4.265 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.170 4.170 22 C -0.126 4.126 23 C -0.162 4.162 24 C -0.035 4.035 25 N -0.177 5.177 26 H 0.256 0.744 27 H 0.071 0.929 28 H 0.014 0.986 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.166 0.834 41 H 0.171 0.829 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.690 -11.110 7.052 13.667 hybrid contribution 0.306 2.038 -0.693 2.174 sum 3.996 -9.072 6.359 11.777 Atomic orbital electron populations 1.70048 1.07471 1.27578 1.51214 1.25727 0.95504 1.02574 0.94695 0.85756 0.78579 0.79386 0.78920 1.19218 1.20997 1.19748 1.21877 0.93183 0.92972 1.50942 0.92702 1.19545 0.91540 0.86690 0.95542 1.62442 1.17558 1.44283 1.01459 1.21954 0.93862 0.97406 0.93447 1.21601 0.97980 0.96940 0.98082 1.21562 0.97122 1.02699 0.93729 1.21607 0.96819 0.95757 0.99545 1.20210 0.91220 0.98399 0.86068 0.93864 1.20260 0.86054 0.96656 0.95761 1.21486 0.99549 1.10405 0.95017 1.19495 0.94884 1.03128 0.95934 1.20522 0.97403 0.99621 0.93403 1.20929 0.93669 1.01154 1.01294 1.21131 1.00573 0.98257 0.92618 1.20347 0.93006 1.04935 0.97955 1.18676 0.95622 1.02132 0.87115 1.41752 1.12645 1.49599 1.13686 0.74430 0.92940 0.98554 0.95751 0.92463 0.96085 0.90031 0.91134 0.92479 0.89193 0.90504 0.91434 0.83823 0.85082 0.83367 0.82930 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.29 21.45 0.28 -55.71 16 2 C 0.01 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.95 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.55 -30.44 7.73 25.60 0.20 -30.25 16 8 H 0.05 2.98 5.85 -2.91 -0.02 2.96 16 9 C 0.19 9.95 4.70 85.56 0.40 10.35 16 10 N -0.53 -21.62 4.45 -880.06 -3.92 -25.54 16 11 C 0.06 2.24 5.04 86.32 0.43 2.67 16 12 C -0.11 -2.85 6.09 30.65 0.19 -2.67 16 13 C -0.11 -2.76 6.00 30.68 0.18 -2.57 16 14 C -0.10 -2.82 5.35 30.65 0.16 -2.66 16 15 C 0.15 5.65 1.92 44.19 0.08 5.74 16 16 H 0.04 1.85 7.03 -2.38 -0.02 1.83 16 17 C 0.12 4.87 4.76 40.86 0.19 5.06 16 18 C -0.24 -9.49 10.95 23.51 0.26 -9.24 16 19 C -0.13 -4.96 6.37 -20.20 -0.13 -5.09 16 20 C -0.09 -2.90 10.05 22.23 0.22 -2.68 16 21 C -0.15 -4.07 9.97 22.03 0.22 -3.85 16 22 C -0.11 -2.85 10.01 22.30 0.22 -2.62 16 23 C -0.14 -4.47 10.08 22.37 0.23 -4.24 16 24 C 0.07 2.72 7.28 39.03 0.28 3.01 16 25 N -0.58 -22.13 4.67 -175.91 -0.82 -22.95 16 26 H 0.42 15.31 8.62 -92.71 -0.80 14.51 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 29 H 0.02 1.36 5.76 -2.39 -0.01 1.35 16 30 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 31 H 0.02 0.84 6.57 -2.39 -0.02 0.83 16 32 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.14 5.23 8.06 -2.91 -0.02 5.21 16 39 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -65.99 332.58 1.40 -64.59 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.21 Total: 30.45 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 3.62 Total: -37.73 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -4.45 Total: -104.20 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.99 1.40 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108385481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.086 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds