Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34636 * 116.99860 * 2 1 4 4 O 1.21508 * 120.00478 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99723 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99741 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46973 * 179.97438 * 6 5 3 8 8 C 1.50704 * 109.47134 * 175.75927 * 7 6 5 9 9 O 1.21293 * 120.00075 * 353.77795 * 8 7 6 10 10 N 1.34784 * 119.99882 * 173.77683 * 8 7 6 11 11 C 1.37096 * 120.00068 * 356.36441 * 10 8 7 12 12 H 1.07998 * 120.00005 * 232.00800 * 11 10 8 13 13 C 1.38950 * 119.99667 * 52.01340 * 11 10 8 14 14 N 1.31417 * 119.99740 * 206.11956 * 13 11 10 15 15 Si 1.86794 * 120.00513 * 26.11454 * 13 11 10 16 16 H 1.48498 * 109.47223 * 89.66706 * 15 13 11 17 17 H 1.48503 * 109.47488 * 209.67230 * 15 13 11 18 18 H 1.48500 * 109.47111 * 329.67162 * 15 13 11 19 19 C 1.46502 * 119.99807 * 176.09103 * 10 8 7 20 20 C 1.54268 * 110.03136 * 237.91156 * 19 10 8 21 21 C 1.54960 * 104.15734 * 217.13833 * 20 19 10 22 22 C 1.54891 * 102.78070 * 37.88268 * 21 20 19 23 23 C 1.53875 * 110.03067 * 120.69063 * 19 10 8 24 24 H 1.08996 * 109.47368 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47618 * 300.00356 * 1 2 3 26 26 H 1.09003 * 109.46799 * 60.00476 * 1 2 3 27 27 H 0.97001 * 120.00088 * 359.97438 * 5 3 2 28 28 H 1.09001 * 109.47415 * 59.99700 * 6 5 3 29 29 H 1.09000 * 109.47208 * 299.99439 * 6 5 3 30 30 H 1.08998 * 109.47476 * 55.75851 * 7 6 5 31 31 H 1.09007 * 109.47191 * 295.75780 * 7 6 5 32 32 H 0.97000 * 119.99618 * 180.02562 * 14 13 11 33 33 H 1.08999 * 110.01378 * 359.29610 * 19 10 8 34 34 H 1.09008 * 110.48386 * 335.78007 * 20 19 10 35 35 H 1.08996 * 110.49189 * 98.42572 * 20 19 10 36 36 H 1.09007 * 110.72031 * 279.56877 * 21 20 19 37 37 H 1.08999 * 110.92476 * 156.29604 * 21 20 19 38 38 H 1.09002 * 110.49018 * 203.40573 * 22 21 20 39 39 H 1.09006 * 110.59751 * 80.81991 * 22 21 20 40 40 H 1.09002 * 110.03167 * 238.56601 * 23 19 10 41 41 H 1.08994 * 110.03298 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0742 2.5755 0.0011 7 6 5.5910 2.3750 0.0023 8 6 6.2747 3.7139 -0.1022 9 8 5.6184 4.7175 -0.2843 10 7 7.6157 3.7962 0.0066 11 6 8.3508 2.6733 0.2865 12 1 9.0566 2.6799 1.1039 13 6 8.1879 1.5270 -0.4816 14 7 8.4534 0.3475 0.0337 15 14 7.5914 1.6621 -2.2466 16 1 8.7578 1.8123 -3.1532 17 1 6.8369 0.4356 -2.6095 18 1 6.7050 2.8461 -2.3802 19 6 8.2881 5.0843 -0.1801 20 6 9.3228 4.9800 -1.3196 21 6 10.5046 5.8601 -0.8401 22 6 10.5519 5.5712 0.6809 23 6 9.0690 5.4603 1.0913 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.9374 0.4566 0.0013 28 1 3.7810 3.1323 0.8911 29 1 3.7817 3.1327 -0.8889 30 1 5.8761 1.7542 -0.8471 31 1 5.8920 1.8846 0.9281 32 1 8.3400 -0.4527 -0.5026 33 1 7.5554 5.8576 -0.4108 34 1 9.6448 3.9466 -1.4490 35 1 8.9078 5.3704 -2.2487 36 1 10.3009 6.9145 -1.0268 37 1 11.4353 5.5572 -1.3199 38 1 11.0340 6.3929 1.2106 39 1 11.0731 4.6341 0.8773 40 1 8.7160 6.4167 1.4772 41 1 8.9481 4.6843 1.8470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125187174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = -115.133330 kcal Electronic energy + Delta-G solvation = -23363.138908 eV Core-core repulsion = 19857.334569 eV Total energy + Delta-G solvation = -3505.804339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25032 -39.39307 -37.20253 -36.49617 -34.82234 -34.26550 -31.93709 -30.57674 -28.13030 -27.73087 -27.02226 -24.73593 -23.49569 -21.11962 -20.14925 -19.93244 -19.35041 -18.45545 -17.21303 -16.59681 -16.47520 -15.91727 -15.69858 -14.91523 -14.76472 -14.29870 -14.01124 -13.87163 -13.65149 -13.44347 -13.15236 -12.71119 -12.58557 -12.08322 -12.05874 -11.78988 -11.23492 -11.08904 -10.98576 -10.88290 -10.70787 -10.61957 -10.53826 -10.47159 -10.42163 -10.11590 -10.02348 -9.83839 -9.08974 -8.92661 -8.72603 -7.61603 -6.62788 -4.30042 2.33829 2.98101 2.98981 3.11911 3.22256 3.65732 4.00168 4.24714 4.56458 4.72741 5.12121 5.18807 5.20000 5.22793 5.35717 5.43469 5.47773 5.62108 5.83929 5.96722 6.09695 6.12762 6.14091 6.16828 6.23033 6.28114 6.37534 6.40300 6.42872 6.53774 6.55851 6.64472 6.79704 6.90726 7.00581 7.55859 7.60959 7.74557 8.40116 8.49324 8.85785 9.20090 9.64985 10.46600 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.004731 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.518686 B = 5917.539306 C = 6520.818512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.375 6.375 3 C 0.644 3.356 4 O -0.574 6.574 5 N -0.705 5.705 6 C 0.150 3.850 7 C -0.136 4.136 8 C 0.501 3.499 9 O -0.593 6.593 10 N -0.463 5.463 11 C -0.346 4.346 12 H 0.101 0.899 13 C 0.080 3.920 14 N -0.847 5.847 15 Si 0.845 3.155 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.259 1.259 19 C 0.129 3.871 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.408 0.592 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.276 0.724 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -0.007 -0.313 3.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.289 6.289 3 C 0.396 3.604 4 O -0.463 6.463 5 N -0.364 5.364 6 C 0.028 3.972 7 C -0.175 4.175 8 C 0.290 3.710 9 O -0.478 6.478 10 N -0.184 5.184 11 C -0.473 4.473 12 H 0.118 0.882 13 C -0.129 4.129 14 N -0.481 5.481 15 Si 0.671 3.329 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.183 1.183 19 C 0.026 3.974 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.164 4.164 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.243 0.757 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.492 0.767 -0.390 4.573 hybrid contribution 0.062 -0.655 -1.117 1.296 sum -4.430 0.112 -1.507 4.681 Atomic orbital electron populations 1.23136 0.74827 1.03134 1.02624 1.86243 1.23915 1.31428 1.87358 1.18124 0.83560 0.82017 0.76669 1.90993 1.64664 1.34793 1.55880 1.44816 1.02859 1.11340 1.77405 1.21202 0.90966 0.81316 1.03759 1.21747 0.92443 0.97918 1.05432 1.20115 0.82935 0.89413 0.78496 1.90563 1.64997 1.37880 1.54315 1.43765 1.03714 1.07700 1.63191 1.18797 1.25411 0.87191 1.15877 0.88198 1.25597 0.94914 0.95033 0.97320 1.69810 1.44299 0.97740 1.36237 0.87391 0.79798 0.78881 0.86845 1.20227 1.20496 1.18289 1.21689 0.94011 0.87896 0.93839 1.22705 0.95510 1.01470 0.97380 1.22412 0.98163 0.99028 0.96169 1.22271 0.96797 1.00936 0.95496 1.22372 0.94615 1.00813 0.98558 0.88213 0.91959 0.92013 0.75717 0.90490 0.90552 0.90366 0.87068 0.91337 0.89855 0.89674 0.92818 0.92257 0.92141 0.92738 0.91373 0.92686 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.56 101.05 1.07 1.67 16 2 O -0.38 -5.43 10.62 -40.31 -0.43 -5.85 16 3 C 0.64 11.14 8.75 54.06 0.47 11.62 16 4 O -0.57 -11.54 16.13 -19.28 -0.31 -11.86 16 5 N -0.71 -11.82 5.56 -65.28 -0.36 -12.18 16 6 C 0.15 2.85 5.07 -4.04 -0.02 2.83 16 7 C -0.14 -2.78 3.83 -27.88 -0.11 -2.89 16 8 C 0.50 11.61 5.80 -10.98 -0.06 11.55 16 9 O -0.59 -14.77 15.25 5.55 0.08 -14.69 16 10 N -0.46 -10.44 1.86 -106.54 -0.20 -10.64 16 11 C -0.35 -8.21 7.26 -14.93 -0.11 -8.31 16 12 H 0.10 2.53 7.39 -52.49 -0.39 2.15 16 13 C 0.08 1.92 4.08 -17.47 -0.07 1.85 16 14 N -0.85 -21.12 13.96 55.50 0.77 -20.35 16 15 Si 0.85 19.07 24.09 -169.99 -4.10 14.97 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.26 -6.07 5.95 56.52 0.34 -5.73 16 19 C 0.13 2.60 3.29 -66.81 -0.22 2.38 16 20 C -0.13 -2.44 6.42 -25.03 -0.16 -2.60 16 21 C -0.12 -1.80 6.91 -24.70 -0.17 -1.97 16 22 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 23 C -0.13 -2.20 6.26 -25.61 -0.16 -2.36 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.41 6.04 8.58 -40.82 -0.35 5.69 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.57 7.89 -51.93 -0.41 1.16 16 30 H 0.08 1.65 3.40 -51.93 -0.18 1.47 16 31 H 0.11 2.26 7.77 -51.93 -0.40 1.86 16 32 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.08 1.75 6.95 -51.93 -0.36 1.39 16 34 H 0.08 1.75 6.41 -51.92 -0.33 1.42 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.44 6.95 -51.93 -0.36 1.08 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -28.80 327.75 -5.52 -34.32 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.21 Total: 9.53 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 0.29 Total: 11.80 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.21 Total: -43.17 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.65 Total: -32.40 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.10 Total: 14.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.80 -5.52 -34.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125187174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.816 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds