Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34636 * 116.99860 * 2 1 4 4 O 1.21508 * 120.00478 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99723 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99741 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46973 * 179.97438 * 6 5 3 8 8 C 1.50704 * 109.47134 * 175.75927 * 7 6 5 9 9 O 1.21293 * 120.00075 * 353.77795 * 8 7 6 10 10 N 1.34784 * 119.99882 * 173.77683 * 8 7 6 11 11 C 1.37096 * 120.00068 * 356.36441 * 10 8 7 12 12 H 1.07998 * 120.00005 * 232.00800 * 11 10 8 13 13 C 1.38950 * 119.99667 * 52.01340 * 11 10 8 14 14 N 1.31417 * 119.99740 * 206.11956 * 13 11 10 15 15 Si 1.86794 * 120.00513 * 26.11454 * 13 11 10 16 16 H 1.48498 * 109.47223 * 89.66706 * 15 13 11 17 17 H 1.48503 * 109.47488 * 209.67230 * 15 13 11 18 18 H 1.48500 * 109.47111 * 329.67162 * 15 13 11 19 19 C 1.46502 * 119.99807 * 176.09103 * 10 8 7 20 20 C 1.54268 * 110.03136 * 237.91156 * 19 10 8 21 21 C 1.54960 * 104.15734 * 217.13833 * 20 19 10 22 22 C 1.54891 * 102.78070 * 37.88268 * 21 20 19 23 23 C 1.53875 * 110.03067 * 120.69063 * 19 10 8 24 24 H 1.08996 * 109.47368 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47618 * 300.00356 * 1 2 3 26 26 H 1.09003 * 109.46799 * 60.00476 * 1 2 3 27 27 H 0.97001 * 120.00088 * 359.97438 * 5 3 2 28 28 H 1.09001 * 109.47415 * 59.99700 * 6 5 3 29 29 H 1.09000 * 109.47208 * 299.99439 * 6 5 3 30 30 H 1.08998 * 109.47476 * 55.75851 * 7 6 5 31 31 H 1.09007 * 109.47191 * 295.75780 * 7 6 5 32 32 H 0.97000 * 119.99618 * 180.02562 * 14 13 11 33 33 H 1.08999 * 110.01378 * 359.29610 * 19 10 8 34 34 H 1.09008 * 110.48386 * 335.78007 * 20 19 10 35 35 H 1.08996 * 110.49189 * 98.42572 * 20 19 10 36 36 H 1.09007 * 110.72031 * 279.56877 * 21 20 19 37 37 H 1.08999 * 110.92476 * 156.29604 * 21 20 19 38 38 H 1.09002 * 110.49018 * 203.40573 * 22 21 20 39 39 H 1.09006 * 110.59751 * 80.81991 * 22 21 20 40 40 H 1.09002 * 110.03167 * 238.56601 * 23 19 10 41 41 H 1.08994 * 110.03298 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0742 2.5755 0.0011 7 6 5.5910 2.3750 0.0023 8 6 6.2747 3.7139 -0.1022 9 8 5.6184 4.7175 -0.2843 10 7 7.6157 3.7962 0.0066 11 6 8.3508 2.6733 0.2865 12 1 9.0566 2.6799 1.1039 13 6 8.1879 1.5270 -0.4816 14 7 8.4534 0.3475 0.0337 15 14 7.5914 1.6621 -2.2466 16 1 8.7578 1.8123 -3.1532 17 1 6.8369 0.4356 -2.6095 18 1 6.7050 2.8461 -2.3802 19 6 8.2881 5.0843 -0.1801 20 6 9.3228 4.9800 -1.3196 21 6 10.5046 5.8601 -0.8401 22 6 10.5519 5.5712 0.6809 23 6 9.0690 5.4603 1.0913 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.9374 0.4566 0.0013 28 1 3.7810 3.1323 0.8911 29 1 3.7817 3.1327 -0.8889 30 1 5.8761 1.7542 -0.8471 31 1 5.8920 1.8846 0.9281 32 1 8.3400 -0.4527 -0.5026 33 1 7.5554 5.8576 -0.4108 34 1 9.6448 3.9466 -1.4490 35 1 8.9078 5.3704 -2.2487 36 1 10.3009 6.9145 -1.0268 37 1 11.4353 5.5572 -1.3199 38 1 11.0340 6.3929 1.2106 39 1 11.0731 4.6341 0.8773 40 1 8.7160 6.4167 1.4772 41 1 8.9481 4.6843 1.8470 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125187174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = -134.710211 kcal Electronic energy + Delta-G solvation = -23363.987825 eV Core-core repulsion = 19857.334569 eV Total energy + Delta-G solvation = -3506.653256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.60754 -41.09846 -38.69905 -37.82782 -36.33908 -36.02848 -33.76100 -32.15210 -29.51881 -29.00303 -28.24856 -26.56855 -25.01868 -22.48951 -21.54919 -21.44028 -21.07890 -19.82953 -18.92700 -18.02907 -17.79929 -17.54226 -17.36676 -16.49871 -16.18904 -15.97354 -15.46912 -15.23695 -15.20325 -14.89970 -14.71161 -14.23205 -14.10560 -13.76398 -13.44867 -12.99552 -12.98933 -12.76959 -12.54731 -12.52173 -12.16653 -11.91411 -11.89327 -11.85606 -11.83791 -11.78921 -11.44797 -11.36084 -10.93471 -10.57352 -10.39489 -9.43481 -8.53737 -6.21369 1.07417 1.15160 1.28727 1.37418 1.61940 1.82028 2.13957 2.61925 2.85971 3.26150 3.76540 3.80703 3.85769 3.97793 4.09612 4.20087 4.34323 4.35711 4.48063 4.60326 4.63510 4.68614 4.72540 4.75114 4.77081 4.87320 4.91365 5.02601 5.09656 5.13951 5.24743 5.27164 5.38207 5.46663 5.58196 5.72067 5.94643 6.25742 6.47944 6.96265 7.16995 7.34736 7.81028 8.59271 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.004731 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.518686 B = 5917.539306 C = 6520.818512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.372 6.372 3 C 0.646 3.354 4 O -0.606 6.606 5 N -0.699 5.699 6 C 0.164 3.836 7 C -0.125 4.125 8 C 0.488 3.512 9 O -0.615 6.615 10 N -0.465 5.465 11 C -0.340 4.340 12 H 0.081 0.919 13 C 0.065 3.935 14 N -0.870 5.870 15 Si 0.882 3.118 16 H -0.278 1.278 17 H -0.266 1.266 18 H -0.274 1.274 19 C 0.117 3.883 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.122 4.122 24 H 0.140 0.860 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.418 0.582 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.282 0.718 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 -0.143 -0.610 3.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.497 6.497 5 N -0.359 5.359 6 C 0.041 3.959 7 C -0.164 4.164 8 C 0.278 3.722 9 O -0.502 6.502 10 N -0.185 5.185 11 C -0.467 4.467 12 H 0.099 0.901 13 C -0.143 4.143 14 N -0.505 5.505 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.191 1.191 18 H -0.200 1.200 19 C 0.014 3.986 20 C -0.172 4.172 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.160 4.160 24 H 0.158 0.842 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.255 0.745 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.220 0.587 -0.688 4.316 hybrid contribution -0.065 -0.620 -0.992 1.171 sum -4.285 -0.033 -1.679 4.603 Atomic orbital electron populations 1.23554 0.72517 1.05837 1.02686 1.86265 1.26071 1.29448 1.86764 1.18192 0.83433 0.82451 0.76012 1.90972 1.65339 1.36140 1.57280 1.44619 1.03086 1.10920 1.77263 1.20868 0.90047 0.82236 1.02743 1.21614 0.93169 0.96468 1.05181 1.20577 0.83213 0.90100 0.78352 1.90539 1.65386 1.38810 1.55461 1.43876 1.03679 1.08352 1.62611 1.18564 1.24911 0.87788 1.15432 0.90121 1.25789 0.95044 0.94736 0.98709 1.69831 1.45264 0.98257 1.37139 0.86835 0.79143 0.78593 0.84637 1.20438 1.19086 1.19987 1.21949 0.94297 0.86336 0.96010 1.22689 0.96532 1.00976 0.96996 1.22406 0.97215 0.99484 0.95641 1.22245 0.94935 1.01627 0.96071 1.22336 0.96170 1.00793 0.96701 0.84174 0.91893 0.92064 0.74465 0.90979 0.92144 0.90670 0.86945 0.90695 0.91056 0.91990 0.92597 0.90098 0.90452 0.89686 0.92504 0.91053 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 10.56 113.37 1.20 2.10 16 2 O -0.37 -10.13 10.62 -55.45 -0.59 -10.72 16 3 C 0.65 21.86 8.75 129.79 1.14 22.99 16 4 O -0.61 -24.23 16.13 19.81 0.32 -23.91 16 5 N -0.70 -23.00 5.56 -590.85 -3.29 -26.28 16 6 C 0.16 6.28 5.07 86.38 0.44 6.72 16 7 C -0.12 -5.13 3.83 29.85 0.11 -5.01 16 8 C 0.49 22.88 5.80 87.66 0.51 23.39 16 9 O -0.62 -31.17 15.25 -3.07 -0.05 -31.22 16 10 N -0.46 -21.19 1.86 -609.36 -1.13 -22.32 16 11 C -0.34 -16.27 7.26 84.04 0.61 -15.66 16 12 H 0.08 4.18 7.39 -2.91 -0.02 4.16 16 13 C 0.06 3.09 4.08 84.93 0.35 3.43 16 14 N -0.87 -43.00 13.96 21.66 0.30 -42.70 16 15 Si 0.88 38.95 24.09 68.60 1.65 40.60 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.27 -12.83 5.95 99.48 0.59 -12.23 16 19 C 0.12 4.70 3.29 45.72 0.15 4.85 16 20 C -0.13 -4.82 6.42 31.69 0.20 -4.62 16 21 C -0.11 -3.01 6.91 31.91 0.22 -2.79 16 22 C -0.11 -3.15 6.83 31.67 0.22 -2.93 16 23 C -0.12 -4.16 6.26 31.32 0.20 -3.97 16 24 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.42 11.94 8.58 -92.71 -0.80 11.15 16 28 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.06 2.51 7.89 -2.39 -0.02 2.50 16 30 H 0.08 3.14 3.40 -2.39 -0.01 3.13 16 31 H 0.11 4.58 7.77 -2.38 -0.02 4.56 16 32 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 33 H 0.07 3.01 6.95 -2.39 -0.02 3.00 16 34 H 0.06 2.53 6.41 -2.38 -0.02 2.51 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.05 2.10 6.95 -2.39 -0.02 2.08 16 Total: -1.00 -61.47 327.75 2.69 -58.78 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.13 Total: 29.25 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 5.34 Total: 28.51 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -4.12 Total: -91.30 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -0.32 Total: -65.85 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.65 Total: 40.60 kcal Total: -61.47 2.69 -58.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125187174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.926 kcal (2) G-P(sol) polarization free energy of solvation -61.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds