Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 C 1.52996 * 109.47227 * 239.99634 * 2 1 3 5 5 O 1.45205 * 109.46956 * 119.99896 * 2 1 3 6 6 C 1.34638 * 117.00095 * 60.00075 * 5 2 1 7 7 O 1.21518 * 119.99716 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00405 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00170 * 185.07063 * 8 6 5 10 10 C 1.50694 * 109.47151 * 269.99720 * 9 8 6 11 11 O 1.21289 * 120.00236 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00153 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00447 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99579 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00392 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99807 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46906 * 60.00518 * 17 15 13 19 19 H 1.48507 * 109.46829 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47370 * 300.00317 * 17 15 13 21 21 C 1.46505 * 119.99377 * 5.07032 * 8 6 5 22 22 C 1.53000 * 117.49243 * 183.08100 * 21 8 6 23 23 C 1.52999 * 117.49496 * 114.42480 * 21 8 6 24 24 H 1.08994 * 109.47031 * 300.00502 * 1 2 3 25 25 H 1.09000 * 109.46983 * 60.00044 * 1 2 3 26 26 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47051 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47008 * 299.99941 * 3 2 1 29 29 H 1.08998 * 109.46954 * 59.99848 * 3 2 1 30 30 H 1.09002 * 109.47879 * 300.00368 * 4 2 1 31 31 H 1.08995 * 109.47330 * 60.00399 * 4 2 1 32 32 H 1.09002 * 109.47363 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46955 * 30.00151 * 9 8 6 34 34 H 1.09004 * 109.46990 * 149.99860 * 9 8 6 35 35 H 0.97001 * 119.99657 * 0.02562 * 12 10 9 36 36 H 0.96995 * 120.00176 * 179.97438 * 16 15 13 37 37 H 1.08997 * 115.55328 * 328.74278 * 21 8 6 38 38 H 1.09003 * 117.50557 * 359.97438 * 22 21 8 39 39 H 1.09001 * 117.50043 * 145.02632 * 22 21 8 40 40 H 1.09010 * 117.49418 * 214.97601 * 23 21 8 41 41 H 1.08997 * 117.50462 * 359.96746 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0671 -2.6654 2.4172 9 6 1.7674 -4.0951 2.5291 10 6 0.4476 -4.2781 3.2329 11 8 -0.1812 -3.3097 3.6041 12 7 -0.0342 -5.5180 3.4499 13 6 -1.2352 -5.6846 4.0897 14 1 -1.7954 -4.8221 4.4195 15 6 -1.7321 -6.9628 4.3129 16 7 -1.0507 -8.0121 3.9112 17 14 -3.3682 -7.1897 5.1854 18 1 -4.4408 -6.5185 4.4082 19 1 -3.6717 -8.6389 5.2993 20 1 -3.2925 -6.5921 6.5427 21 6 2.8178 -1.9891 3.4781 22 6 3.3230 -2.8447 4.6415 23 6 2.1546 -1.8786 4.8524 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2493 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 1.7119 -4.5337 1.5327 34 1 2.5548 -4.5878 3.0995 35 1 0.4688 -6.2925 3.1533 36 1 -1.3973 -8.9044 4.0673 37 1 3.4456 -1.1591 3.1539 38 1 3.0966 -3.9107 4.6179 39 1 4.2830 -2.5773 5.0831 40 1 2.3464 -0.9759 5.4326 41 1 1.1596 -2.3086 4.9672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126198643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -83.409120 kcal Electronic energy + Delta-G solvation = -23663.984923 eV Core-core repulsion = 20159.556249 eV Total energy + Delta-G solvation = -3504.428674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60796 -38.80195 -37.20084 -36.39414 -33.93776 -33.90913 -32.84152 -31.23522 -27.99835 -27.39625 -27.27456 -24.63320 -22.76318 -22.09766 -21.35519 -19.62112 -18.73561 -17.97804 -17.76358 -16.49348 -16.27211 -15.50251 -15.22804 -15.03555 -14.54486 -14.24521 -14.11766 -13.73052 -13.55264 -13.35480 -12.65731 -12.49469 -12.25129 -12.15309 -11.85830 -11.82487 -11.62997 -11.57391 -11.39840 -11.17006 -11.11800 -10.85637 -10.71725 -10.43843 -10.35889 -10.21738 -10.18652 -9.67747 -9.47519 -8.77387 -7.96681 -7.96385 -6.41402 -3.82168 2.34301 3.16359 3.20433 3.26309 3.31134 3.85788 3.92770 4.09820 4.19273 4.77823 4.81130 4.91953 4.96619 5.08043 5.13344 5.20887 5.26575 5.42870 5.46318 5.56643 5.63940 5.68928 5.78200 5.85513 5.92475 5.93876 5.98044 6.00864 6.19787 6.25203 6.35286 6.48812 6.63591 6.70762 6.74871 7.55249 7.68888 8.03755 8.58690 8.69855 9.17465 9.52210 10.03231 10.75953 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004548 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.973202 B = 6154.821071 C = 6739.516520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.663 3.337 7 O -0.562 6.562 8 N -0.544 5.544 9 C 0.115 3.885 10 C 0.426 3.574 11 O -0.580 6.580 12 N -0.558 5.558 13 C -0.298 4.298 14 H 0.102 0.898 15 C 0.024 3.976 16 N -0.900 5.900 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.077 3.923 22 C -0.188 4.188 23 C -0.191 4.191 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.393 0.607 36 H 0.272 0.728 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 12.581 -5.101 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.418 3.582 7 O -0.451 6.451 8 N -0.281 5.281 9 C -0.011 4.011 10 C 0.210 3.790 11 O -0.465 6.465 12 N -0.195 5.195 13 C -0.428 4.428 14 H 0.120 0.880 15 C -0.178 4.178 16 N -0.541 5.541 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.028 4.028 22 C -0.225 4.225 23 C -0.229 4.229 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.923 12.915 -5.171 17.088 hybrid contribution -0.601 -0.712 0.275 0.972 sum 9.322 12.202 -4.895 16.117 Atomic orbital electron populations 1.22498 0.93984 1.05474 1.02088 1.21992 0.94501 0.91322 0.82347 1.21831 1.01909 0.92882 1.02922 1.22516 1.01221 1.03764 0.96471 1.86276 1.71452 1.23912 1.46054 1.17733 0.78282 0.80281 0.81912 1.90895 1.39962 1.70283 1.43966 1.45575 1.56011 1.08451 1.18026 1.21300 0.97504 0.79168 1.03115 1.20210 0.88526 0.84414 0.85808 1.90488 1.60749 1.39320 1.55906 1.41821 1.20375 1.05866 1.51416 1.19631 0.96640 0.93574 1.32956 0.88038 1.25250 0.99700 0.94899 0.97919 1.69597 1.39128 0.98584 1.46832 0.85926 0.81605 0.77017 0.79724 1.19913 1.20938 1.19915 1.21642 0.98886 0.99028 0.83195 1.23339 0.99285 0.98629 1.01290 1.23697 0.99745 1.00984 0.98467 0.92135 0.91577 0.89098 0.91706 0.90423 0.91529 0.89251 0.91444 0.92406 0.88007 0.88224 0.77421 0.91778 0.85336 0.88120 0.88155 0.88904 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.37 37.16 0.31 -2.32 16 2 C 0.14 1.81 1.13 -90.62 -0.10 1.71 16 3 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 4 C -0.18 -2.28 8.37 37.16 0.31 -1.97 16 5 O -0.36 -5.84 8.89 -40.32 -0.36 -6.20 16 6 C 0.66 12.51 7.69 54.05 0.42 12.92 16 7 O -0.56 -11.87 11.51 -19.29 -0.22 -12.09 16 8 N -0.54 -9.73 2.29 -173.23 -0.40 -10.13 16 9 C 0.11 2.12 5.39 -5.20 -0.03 2.10 16 10 C 0.43 10.12 7.62 -10.99 -0.08 10.04 16 11 O -0.58 -15.66 13.71 5.55 0.08 -15.58 16 12 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 13 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 14 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 17 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.08 1.15 6.17 -67.93 -0.42 0.73 16 22 C -0.19 -2.49 9.74 -26.69 -0.26 -2.75 16 23 C -0.19 -2.98 10.16 -26.69 -0.27 -3.26 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.63 5.88 -51.93 -0.31 1.33 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.37 5.88 -51.93 -0.31 1.06 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 1.86 7.50 -51.93 -0.39 1.47 16 34 H 0.10 1.53 5.98 -51.93 -0.31 1.22 16 35 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.13 1.66 7.70 -51.93 -0.40 1.26 16 38 H 0.10 1.43 6.11 -51.93 -0.32 1.11 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.12 2.52 5.71 -51.93 -0.30 2.22 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -32.44 335.69 -6.20 -38.64 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.96 Total: 13.87 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.04 Total: 8.25 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.27 Total: -48.14 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.50 Total: -33.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.44 -6.20 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126198643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.770 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds