Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 C 1.52996 * 109.47227 * 239.99634 * 2 1 3 5 5 O 1.45205 * 109.46956 * 119.99896 * 2 1 3 6 6 C 1.34638 * 117.00095 * 60.00075 * 5 2 1 7 7 O 1.21518 * 119.99716 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00405 * 180.02562 * 6 5 2 9 9 C 1.46497 * 120.00170 * 185.07063 * 8 6 5 10 10 C 1.50694 * 109.47151 * 269.99720 * 9 8 6 11 11 O 1.21289 * 120.00236 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00153 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00447 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99579 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00392 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99807 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46906 * 60.00518 * 17 15 13 19 19 H 1.48507 * 109.46829 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47370 * 300.00317 * 17 15 13 21 21 C 1.46505 * 119.99377 * 5.07032 * 8 6 5 22 22 C 1.53000 * 117.49243 * 183.08100 * 21 8 6 23 23 C 1.52999 * 117.49496 * 114.42480 * 21 8 6 24 24 H 1.08994 * 109.47031 * 300.00502 * 1 2 3 25 25 H 1.09000 * 109.46983 * 60.00044 * 1 2 3 26 26 H 1.08992 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47051 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47008 * 299.99941 * 3 2 1 29 29 H 1.08998 * 109.46954 * 59.99848 * 3 2 1 30 30 H 1.09002 * 109.47879 * 300.00368 * 4 2 1 31 31 H 1.08995 * 109.47330 * 60.00399 * 4 2 1 32 32 H 1.09002 * 109.47363 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46955 * 30.00151 * 9 8 6 34 34 H 1.09004 * 109.46990 * 149.99860 * 9 8 6 35 35 H 0.97001 * 119.99657 * 0.02562 * 12 10 9 36 36 H 0.96995 * 120.00176 * 179.97438 * 16 15 13 37 37 H 1.08997 * 115.55328 * 328.74278 * 21 8 6 38 38 H 1.09003 * 117.50557 * 359.97438 * 22 21 8 39 39 H 1.09001 * 117.50043 * 145.02632 * 22 21 8 40 40 H 1.09010 * 117.49418 * 214.97601 * 23 21 8 41 41 H 1.08997 * 117.50462 * 359.96746 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0671 -2.6654 2.4172 9 6 1.7674 -4.0951 2.5291 10 6 0.4476 -4.2781 3.2329 11 8 -0.1812 -3.3097 3.6041 12 7 -0.0342 -5.5180 3.4499 13 6 -1.2352 -5.6846 4.0897 14 1 -1.7954 -4.8221 4.4195 15 6 -1.7321 -6.9628 4.3129 16 7 -1.0507 -8.0121 3.9112 17 14 -3.3682 -7.1897 5.1854 18 1 -4.4408 -6.5185 4.4082 19 1 -3.6717 -8.6389 5.2993 20 1 -3.2925 -6.5921 6.5427 21 6 2.8178 -1.9891 3.4781 22 6 3.3230 -2.8447 4.6415 23 6 2.1546 -1.8786 4.8524 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2493 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 1.7119 -4.5337 1.5327 34 1 2.5548 -4.5878 3.0995 35 1 0.4688 -6.2925 3.1533 36 1 -1.3973 -8.9044 4.0673 37 1 3.4456 -1.1591 3.1539 38 1 3.0966 -3.9107 4.6179 39 1 4.2830 -2.5773 5.0831 40 1 2.3464 -0.9759 5.4326 41 1 1.1596 -2.3086 4.9672 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126198643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -104.853784 kcal Electronic energy + Delta-G solvation = -23664.914833 eV Core-core repulsion = 20159.556249 eV Total energy + Delta-G solvation = -3505.358584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97081 -40.39815 -38.77373 -37.71428 -35.96717 -35.09849 -34.22130 -33.28263 -29.62109 -28.36064 -28.25926 -26.61325 -24.07223 -23.24629 -22.69018 -21.26385 -20.24606 -19.82052 -19.17391 -18.07245 -17.69348 -17.05444 -16.66880 -16.40288 -16.22496 -15.71787 -15.46533 -15.28722 -15.10481 -14.51962 -14.44442 -13.63172 -13.46012 -13.39485 -13.19494 -13.14935 -12.94205 -12.83103 -12.81760 -12.62179 -12.46254 -12.29145 -12.15549 -12.13726 -12.03909 -11.51246 -11.46740 -11.36502 -11.01794 -10.55869 -10.03032 -9.51995 -8.48113 -5.97114 1.03100 1.37009 1.39444 1.50374 1.74158 1.99238 2.28365 2.72254 2.91006 3.17251 3.21355 3.77935 3.81732 3.87519 3.96957 3.99983 4.03160 4.10150 4.31268 4.36396 4.53333 4.61879 4.70013 4.77234 4.82609 4.84474 4.90135 4.93144 5.09258 5.13547 5.25030 5.30348 5.36645 5.39254 5.40512 5.50650 5.95694 6.31056 6.56295 7.09338 7.28035 7.51089 8.06212 8.68678 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004548 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.973202 B = 6154.821071 C = 6739.516520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.130 4.130 4 C -0.177 4.177 5 O -0.359 6.359 6 C 0.655 3.345 7 O -0.593 6.593 8 N -0.549 5.549 9 C 0.124 3.876 10 C 0.425 3.575 11 O -0.616 6.616 12 N -0.568 5.568 13 C -0.333 4.333 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.991 3.009 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.270 1.270 21 C 0.069 3.931 22 C -0.162 4.162 23 C -0.210 4.210 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.397 0.603 36 H 0.279 0.721 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.340 13.650 -5.242 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.187 4.187 4 C -0.234 4.234 5 O -0.273 6.273 6 C 0.411 3.589 7 O -0.484 6.484 8 N -0.285 5.285 9 C -0.001 4.001 10 C 0.211 3.789 11 O -0.502 6.502 12 N -0.205 5.205 13 C -0.462 4.462 14 H 0.094 0.906 15 C -0.209 4.209 16 N -0.558 5.558 17 Si 0.815 3.185 18 H -0.202 1.202 19 H -0.192 1.192 20 H -0.195 1.195 21 C -0.034 4.034 22 C -0.199 4.199 23 C -0.249 4.249 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.155 0.845 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.173 0.827 38 H 0.108 0.892 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.678 13.992 -5.311 18.983 hybrid contribution -1.148 -0.970 0.285 1.530 sum 10.530 13.022 -5.026 17.484 Atomic orbital electron populations 1.22463 0.95237 1.02919 1.03186 1.22466 0.93817 0.93313 0.81850 1.21854 1.02741 0.89887 1.04232 1.22455 1.01962 1.01910 0.97098 1.86290 1.71211 1.22355 1.47475 1.18011 0.77934 0.81079 0.81865 1.90886 1.41227 1.71140 1.45183 1.45741 1.55936 1.08217 1.18599 1.21224 0.95366 0.80569 1.02970 1.21161 0.89835 0.83309 0.84575 1.90471 1.62324 1.40356 1.57065 1.41861 1.20066 1.06658 1.51890 1.19566 0.98120 0.93451 1.35095 0.90635 1.26003 1.02747 0.94153 0.98046 1.69655 1.40289 0.98943 1.46907 0.85023 0.77338 0.77636 0.78531 1.20174 1.19195 1.19492 1.22014 0.98790 1.00276 0.82320 1.23446 0.99809 0.97418 0.99205 1.23569 0.98293 1.02925 1.00079 0.92945 0.88565 0.93343 0.90369 0.87740 0.91598 0.92633 0.88865 0.91096 0.87688 0.84537 0.76908 0.91184 0.82675 0.89232 0.84042 0.86425 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.19 8.37 71.98 0.60 -4.59 16 2 C 0.12 3.10 1.13 -10.80 -0.01 3.09 16 3 C -0.13 -2.14 8.85 71.98 0.64 -1.50 16 4 C -0.18 -4.17 8.37 71.98 0.60 -3.57 16 5 O -0.36 -11.33 8.89 -55.47 -0.49 -11.82 16 6 C 0.66 25.01 7.69 129.79 1.00 26.01 16 7 O -0.59 -26.03 11.51 19.78 0.23 -25.80 16 8 N -0.55 -19.53 2.29 -932.39 -2.14 -21.67 16 9 C 0.12 4.64 5.39 85.63 0.46 5.10 16 10 C 0.42 20.94 7.62 87.66 0.67 21.61 16 11 O -0.62 -34.96 13.71 -3.06 -0.04 -35.00 16 12 N -0.57 -29.85 5.29 -306.99 -1.62 -31.48 16 13 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 14 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 15 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 16 N -0.92 -50.00 13.05 21.66 0.28 -49.71 16 17 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 C 0.07 1.96 6.17 44.99 0.28 2.23 16 22 C -0.16 -3.89 9.74 30.62 0.30 -3.59 16 23 C -0.21 -6.46 10.16 30.62 0.31 -6.15 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.82 5.88 -2.39 -0.01 1.81 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.72 5.88 -2.39 -0.01 1.70 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 3.88 7.50 -2.39 -0.02 3.86 16 34 H 0.14 4.04 5.98 -2.38 -0.01 4.03 16 35 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 36 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.16 3.54 7.70 -2.39 -0.02 3.52 16 38 H 0.09 2.37 6.11 -2.39 -0.01 2.36 16 39 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.07 3.13 5.71 -2.39 -0.01 3.11 16 Total: -1.00 -74.40 335.69 4.69 -69.72 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.32 Total: 39.86 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.13 Total: 20.12 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -3.48 Total: -102.86 kcal Atomic # 8 Polarization: -72.31 SS G_CDS: -0.31 Total: -72.62 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.40 4.69 -69.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126198643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.137 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds