Wall clock time and date at job start Tue Mar 31 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48496 * 109.47359 * 240.00375 * 3 2 1 5 5 H 1.48506 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47115 * 120.00129 * 3 2 1 7 7 C 1.37877 * 120.00497 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46871 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47159 * 179.97438 * 11 10 9 13 13 C 1.46964 * 111.00230 * 169.46557 * 12 11 10 14 14 C 1.53477 * 109.45053 * 52.92049 * 13 12 11 15 15 C 1.50800 * 107.99053 * 48.95590 * 14 13 12 16 16 C 1.44579 * 129.32694 * 164.20679 * 15 14 13 17 17 C 1.39845 * 132.84632 * 0.04720 * 16 15 14 18 18 C 1.37288 * 116.90833 * 179.97438 * 17 16 15 19 19 C 1.38534 * 122.09320 * 359.97438 * 18 17 16 20 20 C 1.38398 * 122.24403 * 0.02562 * 19 18 17 21 21 C 1.39329 * 116.95000 * 359.97438 * 20 19 18 22 22 N 1.36589 * 132.05733 * 180.02562 * 21 20 19 23 23 H 0.97001 * 125.11611 * 0.20751 * 22 21 20 24 24 C 1.35254 * 123.47928 * 344.25847 * 15 14 13 25 25 C 1.47189 * 111.00091 * 293.95698 * 12 11 10 26 26 H 0.96993 * 119.99880 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47495 * 59.99809 * 9 7 2 28 28 H 1.09003 * 109.46587 * 299.99745 * 9 7 2 29 29 H 1.08996 * 109.47194 * 59.99593 * 10 9 7 30 30 H 1.09001 * 109.46730 * 299.99421 * 10 9 7 31 31 H 1.09004 * 109.46872 * 60.00399 * 11 10 9 32 32 H 1.08992 * 109.47519 * 299.99796 * 11 10 9 33 33 H 1.09008 * 109.47803 * 172.91658 * 13 12 11 34 34 H 1.09003 * 109.47077 * 292.92561 * 13 12 11 35 35 H 1.08994 * 109.76157 * 168.57694 * 14 13 12 36 36 H 1.09002 * 109.75749 * 289.28731 * 14 13 12 37 37 H 1.08007 * 121.54194 * 359.97438 * 17 16 15 38 38 H 1.07994 * 118.95118 * 180.02562 * 18 17 16 39 39 H 1.07997 * 118.87597 * 179.97438 * 19 18 17 40 40 H 1.07994 * 121.52679 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.63731 * 167.65225 * 25 12 11 42 42 H 1.09003 * 109.79706 * 47.15430 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 7 2.4351 -6.1036 -0.0024 13 6 1.7521 -7.3806 0.2479 14 6 0.5912 -7.5420 -0.7429 15 6 1.1155 -7.2501 -2.1263 16 6 0.5276 -7.5534 -3.4119 17 6 -0.6619 -8.1849 -3.7884 18 6 -0.9038 -8.3025 -5.1347 19 6 -0.0191 -7.8217 -6.0862 20 6 1.1650 -7.1929 -5.7426 21 6 1.4374 -7.0591 -4.3828 22 7 2.4886 -6.5034 -3.7106 23 1 3.2586 -6.0853 -4.1266 24 6 2.2899 -6.6218 -2.3619 25 6 3.2020 -6.1415 -1.2581 26 1 -0.4849 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6242 -2.5574 0.8881 29 1 2.8715 -3.6046 0.8890 30 1 2.8727 -3.6039 -0.8910 31 1 0.8543 -5.0446 -0.8923 32 1 0.8535 -5.0450 0.8876 33 1 2.4574 -8.2015 0.1183 34 1 1.3646 -7.3918 1.2667 35 1 0.2102 -8.5623 -0.7010 36 1 -0.2055 -6.8407 -0.4945 37 1 -1.3581 -8.5626 -3.0541 38 1 -1.8130 -8.7843 -5.4624 39 1 -0.2612 -7.9425 -7.1317 40 1 1.8462 -6.8221 -6.4941 41 1 4.0428 -6.8271 -1.1532 42 1 3.5707 -5.1436 -1.4957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126609171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:43 Heat of formation + Delta-G solvation = 46.494186 kcal Electronic energy + Delta-G solvation = -21923.902462 eV Core-core repulsion = 18868.248833 eV Total energy + Delta-G solvation = -3055.653629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60063 -38.55016 -36.46891 -34.02160 -32.67494 -31.39789 -30.65339 -29.05646 -28.68420 -26.78935 -24.85975 -23.39526 -22.21128 -21.64922 -21.19409 -20.01937 -18.30315 -17.66071 -16.57688 -16.26264 -15.39810 -15.29841 -14.81767 -14.73480 -14.32276 -14.21537 -13.99211 -13.91624 -13.26951 -12.79707 -12.62973 -12.39857 -12.24092 -11.85458 -11.58451 -11.51185 -11.23987 -11.15540 -11.09818 -10.87154 -10.72241 -10.52275 -10.46414 -9.62394 -9.49748 -9.31207 -9.04907 -8.32008 -8.18935 -8.07188 -7.48316 -5.97212 -3.99540 1.07014 1.65839 2.66236 3.11289 3.34274 3.38651 3.40992 3.90961 4.09133 4.48240 4.69065 4.80719 4.90502 5.03973 5.07823 5.14967 5.22735 5.37457 5.38736 5.44365 5.54242 5.59969 5.74916 5.77781 5.83089 5.94494 5.95624 6.07758 6.12699 6.15502 6.37288 6.47151 6.58930 6.68472 6.72112 6.76290 6.87171 7.10926 7.18510 7.29609 7.34989 7.54103 7.70782 7.86531 8.03252 8.46058 9.07500 9.64210 11.14174 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.003962 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.060954 B = 7064.999453 C = 7764.997203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.049 3.951 12 N -0.521 5.521 13 C 0.053 3.947 14 C -0.080 4.080 15 C -0.173 4.173 16 C -0.096 4.096 17 C -0.068 4.068 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.131 4.131 21 C 0.096 3.904 22 N -0.579 5.579 23 H 0.415 0.585 24 C 0.048 3.952 25 C 0.112 3.888 26 H 0.260 0.740 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 -19.039 -7.791 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.078 4.078 12 N -0.242 5.242 13 C -0.075 4.075 14 C -0.119 4.119 15 C -0.179 4.179 16 C -0.100 4.100 17 C -0.087 4.087 18 C -0.173 4.173 19 C -0.126 4.126 20 C -0.152 4.152 21 C -0.013 4.013 22 N -0.181 5.181 23 H 0.252 0.748 24 C -0.062 4.062 25 C -0.018 4.018 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.824 -18.773 -7.387 20.371 hybrid contribution 0.126 1.102 -1.110 1.569 sum 2.950 -17.671 -8.497 19.828 Atomic orbital electron populations 1.69956 1.06048 1.26640 1.50860 1.25022 0.94825 0.99189 0.95393 0.86676 0.79595 0.83247 0.78580 1.20345 1.21295 1.20200 1.21209 0.92949 0.91086 1.50541 0.92796 1.19049 0.94009 0.91313 0.97081 1.21663 0.99145 0.92961 1.00442 1.22392 0.94010 0.90458 1.00962 1.62551 1.27763 1.03827 1.30085 1.22281 0.94703 0.91753 0.98741 1.20669 0.99112 1.01756 0.90326 1.19864 0.96218 1.08102 0.93759 1.18868 0.95844 1.03447 0.91873 1.20592 0.94849 0.97624 0.95619 1.20595 1.00193 1.03583 0.92882 1.20748 0.93791 0.98846 0.99190 1.20373 0.98927 1.04248 0.91627 1.18453 0.89520 1.00105 0.93197 1.41363 1.20034 1.51478 1.05179 0.74830 1.21677 0.98808 1.01725 0.84017 1.21134 0.94354 1.02211 0.84066 0.92989 0.96924 0.96578 0.92580 0.93821 0.94129 0.90985 0.90905 0.89968 0.90949 0.90680 0.85593 0.86700 0.86442 0.85704 0.89245 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.10 -2.17 5.11 -26.73 -0.14 -2.31 16 11 C 0.05 0.85 3.99 -3.83 -0.02 0.84 16 12 N -0.52 -7.59 4.94 -235.25 -1.16 -8.76 16 13 C 0.05 0.65 5.94 -3.54 -0.02 0.63 16 14 C -0.08 -1.01 5.71 -27.59 -0.16 -1.17 16 15 C -0.17 -2.53 5.47 -103.14 -0.56 -3.09 16 16 C -0.10 -1.41 6.27 -105.38 -0.66 -2.07 16 17 C -0.07 -0.88 10.26 -39.33 -0.40 -1.28 16 18 C -0.15 -1.76 9.89 -39.82 -0.39 -2.15 16 19 C -0.11 -1.19 9.93 -39.41 -0.39 -1.58 16 20 C -0.13 -1.56 10.28 -39.12 -0.40 -1.96 16 21 C 0.10 1.33 7.19 -83.93 -0.60 0.73 16 22 N -0.58 -7.47 6.03 -6.51 -0.04 -7.51 16 23 H 0.41 4.16 8.96 -40.82 -0.37 3.79 16 24 C 0.05 0.68 6.50 -81.26 -0.53 0.15 16 25 C 0.11 1.49 6.02 -4.65 -0.03 1.46 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.89 6.33 -51.93 -0.33 0.56 16 31 H 0.04 0.77 6.02 -51.93 -0.31 0.46 16 32 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.07 0.80 8.07 -51.92 -0.42 0.38 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.03 7.24 -51.93 -0.38 0.66 16 37 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 1.36 6.04 -51.93 -0.31 1.04 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -32.44 335.10 -11.60 -44.03 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.30 Total: 1.93 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -4.86 Total: -25.02 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -0.47 Total: -42.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.44 -11.60 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126609171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.528 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds