Wall clock time and date at job start Tue Mar 31 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99836 * 2 1 4 4 H 1.48496 * 109.47359 * 240.00375 * 3 2 1 5 5 H 1.48506 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47115 * 120.00129 * 3 2 1 7 7 C 1.37877 * 120.00497 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46871 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47159 * 179.97438 * 11 10 9 13 13 C 1.46964 * 111.00230 * 169.46557 * 12 11 10 14 14 C 1.53477 * 109.45053 * 52.92049 * 13 12 11 15 15 C 1.50800 * 107.99053 * 48.95590 * 14 13 12 16 16 C 1.44579 * 129.32694 * 164.20679 * 15 14 13 17 17 C 1.39845 * 132.84632 * 0.04720 * 16 15 14 18 18 C 1.37288 * 116.90833 * 179.97438 * 17 16 15 19 19 C 1.38534 * 122.09320 * 359.97438 * 18 17 16 20 20 C 1.38398 * 122.24403 * 0.02562 * 19 18 17 21 21 C 1.39329 * 116.95000 * 359.97438 * 20 19 18 22 22 N 1.36589 * 132.05733 * 180.02562 * 21 20 19 23 23 H 0.97001 * 125.11611 * 0.20751 * 22 21 20 24 24 C 1.35254 * 123.47928 * 344.25847 * 15 14 13 25 25 C 1.47189 * 111.00091 * 293.95698 * 12 11 10 26 26 H 0.96993 * 119.99880 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47495 * 59.99809 * 9 7 2 28 28 H 1.09003 * 109.46587 * 299.99745 * 9 7 2 29 29 H 1.08996 * 109.47194 * 59.99593 * 10 9 7 30 30 H 1.09001 * 109.46730 * 299.99421 * 10 9 7 31 31 H 1.09004 * 109.46872 * 60.00399 * 11 10 9 32 32 H 1.08992 * 109.47519 * 299.99796 * 11 10 9 33 33 H 1.09008 * 109.47803 * 172.91658 * 13 12 11 34 34 H 1.09003 * 109.47077 * 292.92561 * 13 12 11 35 35 H 1.08994 * 109.76157 * 168.57694 * 14 13 12 36 36 H 1.09002 * 109.75749 * 289.28731 * 14 13 12 37 37 H 1.08007 * 121.54194 * 359.97438 * 17 16 15 38 38 H 1.07994 * 118.95118 * 180.02562 * 18 17 16 39 39 H 1.07997 * 118.87597 * 179.97438 * 19 18 17 40 40 H 1.07994 * 121.52679 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.63731 * 167.65225 * 25 12 11 42 42 H 1.09003 * 109.79706 * 47.15430 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 7 2.4351 -6.1036 -0.0024 13 6 1.7521 -7.3806 0.2479 14 6 0.5912 -7.5420 -0.7429 15 6 1.1155 -7.2501 -2.1263 16 6 0.5276 -7.5534 -3.4119 17 6 -0.6619 -8.1849 -3.7884 18 6 -0.9038 -8.3025 -5.1347 19 6 -0.0191 -7.8217 -6.0862 20 6 1.1650 -7.1929 -5.7426 21 6 1.4374 -7.0591 -4.3828 22 7 2.4886 -6.5034 -3.7106 23 1 3.2586 -6.0853 -4.1266 24 6 2.2899 -6.6218 -2.3619 25 6 3.2020 -6.1415 -1.2581 26 1 -0.4849 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6242 -2.5574 0.8881 29 1 2.8715 -3.6046 0.8890 30 1 2.8727 -3.6039 -0.8910 31 1 0.8543 -5.0446 -0.8923 32 1 0.8535 -5.0450 0.8876 33 1 2.4574 -8.2015 0.1183 34 1 1.3646 -7.3918 1.2667 35 1 0.2102 -8.5623 -0.7010 36 1 -0.2055 -6.8407 -0.4945 37 1 -1.3581 -8.5626 -3.0541 38 1 -1.8130 -8.7843 -5.4624 39 1 -0.2612 -7.9425 -7.1317 40 1 1.8462 -6.8221 -6.4941 41 1 4.0428 -6.8271 -1.1532 42 1 3.5707 -5.1436 -1.4957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126609171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:42 Heat of formation + Delta-G solvation = 27.276503 kcal Electronic energy + Delta-G solvation = -21924.735803 eV Core-core repulsion = 18868.248833 eV Total energy + Delta-G solvation = -3056.486971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.59061 -39.65660 -37.45223 -35.89435 -34.12986 -32.96588 -31.67118 -30.25648 -29.66475 -28.45635 -26.14563 -24.93666 -23.19633 -22.84265 -22.45723 -21.53576 -19.42617 -18.63201 -18.39967 -17.53976 -16.70402 -16.49634 -16.39629 -15.84643 -15.75011 -15.32773 -15.14400 -14.88686 -14.40728 -14.24447 -14.01234 -13.77362 -13.57355 -13.30304 -12.98466 -12.77587 -12.60744 -12.53959 -12.30642 -12.27871 -12.21094 -12.04133 -11.72846 -11.39462 -11.35206 -11.09511 -10.55492 -10.48326 -9.38925 -9.04090 -8.46892 -8.20232 -6.31869 0.12250 0.71239 1.38999 1.42473 1.50392 1.64034 2.16803 2.40283 2.93404 2.96518 3.12715 3.76653 3.79825 3.95976 4.07789 4.09844 4.16649 4.24290 4.33679 4.40567 4.49916 4.56767 4.61133 4.67095 4.74048 4.79191 4.87164 4.93999 5.02390 5.03938 5.12793 5.14283 5.22713 5.26677 5.50861 5.55609 5.67097 5.73029 5.78578 5.83406 5.85069 6.05689 6.11267 6.24323 6.25993 6.64003 6.85095 7.37531 8.91633 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.003962 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.060954 B = 7064.999453 C = 7764.997203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.089 4.089 11 C 0.066 3.934 12 N -0.522 5.522 13 C 0.056 3.944 14 C -0.075 4.075 15 C -0.194 4.194 16 C -0.128 4.128 17 C -0.085 4.085 18 C -0.156 4.156 19 C -0.109 4.109 20 C -0.138 4.138 21 C 0.075 3.925 22 N -0.576 5.576 23 H 0.425 0.575 24 C 0.036 3.964 25 C 0.114 3.886 26 H 0.263 0.737 27 H -0.019 1.019 28 H -0.008 1.008 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.116 0.884 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -19.634 -8.528 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.126 4.126 11 C -0.061 4.061 12 N -0.242 5.242 13 C -0.072 4.072 14 C -0.115 4.115 15 C -0.201 4.201 16 C -0.133 4.133 17 C -0.104 4.104 18 C -0.175 4.175 19 C -0.128 4.128 20 C -0.159 4.159 21 C -0.034 4.034 22 N -0.179 5.179 23 H 0.264 0.736 24 C -0.074 4.074 25 C -0.015 4.015 26 H 0.072 0.928 27 H 0.000 1.000 28 H 0.010 0.990 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.134 0.866 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.063 -19.386 -8.132 21.412 hybrid contribution -0.316 1.228 -0.952 1.585 sum 3.747 -18.158 -9.083 20.646 Atomic orbital electron populations 1.70103 1.07902 1.27814 1.51664 1.26007 0.95747 1.03437 0.94677 0.85498 0.78279 0.78002 0.79262 1.19199 1.20843 1.18932 1.21664 0.93555 0.92301 1.50584 0.92067 1.18935 0.94382 0.93308 0.94337 1.21409 0.97909 0.92674 1.00656 1.22018 0.93799 0.90298 1.00016 1.62500 1.26937 1.03895 1.30915 1.22378 0.94843 0.90865 0.99109 1.20646 0.98788 1.02239 0.89777 1.20186 0.96709 1.08723 0.94523 1.19248 0.97014 1.04696 0.92329 1.20872 0.94749 0.97968 0.96777 1.20966 1.01105 1.02975 0.92440 1.21175 0.93211 0.97707 1.00706 1.20763 0.99716 1.04105 0.91309 1.18816 0.89803 1.00685 0.94086 1.41359 1.20318 1.51344 1.04866 0.73599 1.21793 0.99043 1.01948 0.84660 1.21188 0.94639 1.02368 0.83331 0.92804 1.00038 0.99008 0.92371 0.93370 0.95979 0.91177 0.88957 0.88846 0.89238 0.92434 0.84520 0.84229 0.83539 0.83478 0.86606 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.09 -3.74 5.11 30.59 0.16 -3.59 16 11 C 0.07 2.37 3.99 86.30 0.34 2.71 16 12 N -0.52 -14.72 4.94 -898.20 -4.44 -19.16 16 13 C 0.06 1.28 5.94 86.45 0.51 1.79 16 14 C -0.08 -1.91 5.71 30.04 0.17 -1.73 16 15 C -0.19 -5.70 5.47 -18.90 -0.10 -5.80 16 16 C -0.13 -3.79 6.27 -20.36 -0.13 -3.92 16 17 C -0.09 -2.16 10.26 22.43 0.23 -1.93 16 18 C -0.16 -3.34 9.89 22.12 0.22 -3.12 16 19 C -0.11 -2.21 9.93 22.38 0.22 -1.99 16 20 C -0.14 -3.11 10.28 22.57 0.23 -2.88 16 21 C 0.07 2.05 7.19 39.58 0.28 2.34 16 22 N -0.58 -14.71 6.03 -174.52 -1.05 -15.76 16 23 H 0.43 8.34 8.96 -92.71 -0.83 7.50 16 24 C 0.04 1.02 6.50 41.20 0.27 1.28 16 25 C 0.11 2.91 6.02 85.61 0.52 3.43 16 26 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 27 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 30 H 0.05 1.98 6.33 -2.39 -0.02 1.96 16 31 H 0.02 0.87 6.02 -2.39 -0.01 0.85 16 32 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 33 H 0.09 1.81 8.07 -2.38 -0.02 1.79 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.63 7.24 -2.39 -0.02 1.61 16 37 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.12 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.09 2.40 6.04 -2.39 -0.01 2.38 16 Total: -1.00 -70.75 335.10 0.77 -69.98 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.19 Total: 18.74 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 3.77 Total: -42.71 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -5.21 Total: -92.86 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -70.75 0.77 -69.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126609171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.253 kcal (2) G-P(sol) polarization free energy of solvation -70.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds