Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37094 * 120.00071 * 2 1 4 4 H 1.08005 * 120.00104 * 182.03353 * 3 2 1 5 5 C 1.38950 * 119.99789 * 2.03724 * 3 2 1 6 6 N 1.31404 * 120.00337 * 6.62074 * 5 3 2 7 7 Si 1.86809 * 119.99857 * 186.62319 * 5 3 2 8 8 H 1.48501 * 109.46723 * 90.00125 * 7 5 3 9 9 H 1.48495 * 109.46886 * 209.99502 * 7 5 3 10 10 H 1.48493 * 109.47236 * 330.00154 * 7 5 3 11 11 C 1.34783 * 120.00145 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00111 * 185.43257 * 11 2 1 13 13 C 1.50703 * 119.99652 * 5.43438 * 11 2 1 14 14 N 1.46497 * 115.55148 * 44.23376 * 13 11 2 15 15 C 1.34772 * 119.99978 * 66.82454 * 14 13 11 16 16 O 1.21513 * 120.00056 * 353.19937 * 15 14 13 17 17 O 1.34636 * 119.99907 * 173.20877 * 15 14 13 18 18 C 1.45204 * 117.00126 * 185.88562 * 17 15 14 19 19 C 1.53004 * 109.46897 * 59.86269 * 18 17 15 20 20 C 1.52997 * 109.47425 * 179.86246 * 18 17 15 21 21 C 1.53000 * 109.47074 * 299.86578 * 18 17 15 22 22 C 1.53005 * 117.49275 * 189.90437 * 13 11 2 23 23 C 1.52999 * 117.49525 * 258.56304 * 13 11 2 24 24 H 1.09006 * 109.46813 * 176.47371 * 1 2 3 25 25 H 1.09000 * 109.46811 * 296.47186 * 1 2 3 26 26 H 1.09000 * 109.47145 * 56.47486 * 1 2 3 27 27 H 0.96998 * 120.00717 * 180.02562 * 6 5 3 28 28 H 0.97003 * 119.99854 * 247.09394 * 14 13 11 29 29 H 1.08996 * 109.47358 * 59.99910 * 19 18 17 30 30 H 1.08996 * 109.46845 * 180.02562 * 19 18 17 31 31 H 1.09004 * 109.47042 * 299.99752 * 19 18 17 32 32 H 1.09001 * 109.46677 * 59.99769 * 20 18 17 33 33 H 1.08997 * 109.47449 * 180.02562 * 20 18 17 34 34 H 1.09003 * 109.47123 * 300.00228 * 20 18 17 35 35 H 1.08997 * 109.47063 * 67.27103 * 21 18 17 36 36 H 1.08993 * 109.47016 * 187.27761 * 21 18 17 37 37 H 1.09005 * 109.46836 * 307.27111 * 21 18 17 38 38 H 1.08997 * 117.49449 * 214.99936 * 22 13 11 39 39 H 1.08991 * 117.50299 * 0.02562 * 22 13 11 40 40 H 1.09003 * 117.50037 * 359.97356 * 23 13 11 41 41 H 1.08998 * 117.50215 * 144.97772 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2301 1.1876 -0.0332 5 6 1.4564 2.3902 0.0428 6 7 0.1536 2.3914 0.2142 7 14 2.3754 4.0059 -0.1435 8 1 2.4362 4.3779 -1.5799 9 1 1.6663 5.0687 0.6134 10 1 3.7538 3.8555 0.3876 11 6 2.1390 -1.1672 -0.0005 12 8 3.3478 -1.1696 0.0989 13 6 1.3905 -2.4694 -0.1247 14 7 0.3340 -2.4966 -1.1392 15 6 0.6524 -2.4117 -2.4461 16 8 1.7996 -2.1889 -2.7787 17 8 -0.3008 -2.5737 -3.3830 18 6 0.1341 -2.6004 -4.7681 19 6 1.1156 -3.7562 -4.9723 20 6 -1.0791 -2.7944 -5.6800 21 6 0.8240 -1.2787 -5.1116 22 6 2.1758 -3.7609 0.1125 23 6 1.1631 -3.2781 1.1540 24 1 -0.3633 -1.0258 -0.0632 25 1 -0.3633 0.4581 0.9199 26 1 -0.3633 0.5676 -0.8567 27 1 -0.3311 3.2311 0.2437 28 1 -0.5949 -2.5718 -0.8702 29 1 0.6242 -4.6978 -4.7276 30 1 1.4424 -3.7759 -6.0119 31 1 1.9799 -3.6179 -4.3227 32 1 -1.7783 -1.9710 -5.5345 33 1 -0.7526 -2.8149 -6.7197 34 1 -1.5706 -3.7361 -5.4353 35 1 1.7576 -1.2007 -4.5545 36 1 1.0348 -1.2459 -6.1804 37 1 0.1710 -0.4478 -4.8444 38 1 1.9063 -4.6309 -0.4863 39 1 3.2335 -3.6688 0.3587 40 1 1.5552 -2.8686 2.0850 41 1 0.2273 -3.8303 1.2406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151538531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = -59.643819 kcal Electronic energy + Delta-G solvation = -24309.725259 eV Core-core repulsion = 20806.327126 eV Total energy + Delta-G solvation = -3503.398133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54080 -39.11505 -36.88422 -35.81162 -34.67227 -33.92661 -32.25627 -31.32380 -27.36751 -27.20691 -26.47075 -24.95693 -23.34818 -22.29701 -21.66648 -19.78670 -18.68221 -17.90720 -17.09200 -16.57615 -15.92604 -15.76109 -14.94510 -14.76206 -14.34292 -14.04129 -14.00063 -13.60236 -13.47229 -13.21328 -12.50199 -12.40671 -12.15927 -11.81343 -11.72536 -11.67576 -11.58504 -11.37187 -11.23786 -11.12618 -10.96686 -10.86522 -10.60973 -10.32844 -10.27354 -10.13457 -9.92804 -9.61941 -9.12804 -8.98606 -8.13523 -7.80453 -6.19870 -3.75146 2.36462 3.17063 3.25738 3.27397 3.32910 3.58892 4.11763 4.25991 4.42352 4.72531 4.81962 4.85469 5.01249 5.09877 5.27825 5.38514 5.49032 5.53337 5.60668 5.70587 5.72872 5.80966 5.83956 5.98907 6.00774 6.05611 6.16905 6.35414 6.43944 6.45420 6.57526 6.71651 6.84378 7.13959 7.43159 7.59674 7.75354 8.11105 8.53287 8.82109 9.22939 9.49608 10.03666 10.73375 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.006534 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.661797 B = 4284.545008 C = 5295.162443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.435 5.435 3 C -0.294 4.294 4 H 0.104 0.896 5 C 0.025 3.975 6 N -0.888 5.888 7 Si 0.931 3.069 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.474 3.526 12 O -0.584 6.584 13 C 0.109 3.891 14 N -0.675 5.675 15 C 0.649 3.351 16 O -0.543 6.543 17 O -0.369 6.369 18 C 0.137 3.863 19 C -0.181 4.181 20 C -0.139 4.139 21 C -0.184 4.184 22 C -0.147 4.147 23 C -0.158 4.158 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 -11.191 -6.393 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.152 5.152 3 C -0.422 4.422 4 H 0.122 0.878 5 C -0.176 4.176 6 N -0.529 5.529 7 Si 0.757 3.243 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.260 3.740 12 O -0.468 6.468 13 C 0.020 3.980 14 N -0.336 5.336 15 C 0.402 3.598 16 O -0.429 6.429 17 O -0.285 6.285 18 C 0.101 3.899 19 C -0.238 4.238 20 C -0.196 4.196 21 C -0.241 4.241 22 C -0.186 4.186 23 C -0.196 4.196 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.242 0.758 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.365 -10.881 -6.598 13.810 hybrid contribution -0.389 0.934 -0.129 1.020 sum -5.754 -9.947 -6.726 13.315 Atomic orbital electron populations 1.21915 0.80414 0.96505 1.04021 1.43540 1.06011 1.04479 1.61136 1.19842 0.93211 0.81895 1.47214 0.87834 1.25299 0.95838 0.99661 0.96838 1.70159 1.06512 1.26941 1.49324 0.85845 0.79410 0.80649 0.78348 1.20411 1.20895 1.19348 1.18683 0.87036 0.83030 0.85271 1.90510 1.13658 1.85951 1.56707 1.20582 0.92702 0.93867 0.90867 1.44204 1.09598 1.78005 1.01836 1.18012 0.83213 0.76700 0.81850 1.90970 1.19713 1.51732 1.80488 1.86260 1.39006 1.86305 1.16916 1.21988 0.94984 0.96518 0.76455 1.22470 1.00831 0.97156 1.03316 1.21838 0.96805 1.02947 0.97991 1.22536 1.03629 0.95776 1.02129 1.23234 0.99118 0.95527 1.00728 1.23361 1.01317 1.01663 0.93297 0.95411 0.91133 0.92139 0.92467 0.75802 0.92398 0.91277 0.89628 0.91466 0.90412 0.91736 0.88849 0.91749 0.92009 0.88616 0.86887 0.87246 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.70 8.41 59.85 0.50 3.21 16 2 N -0.43 -11.66 3.03 -122.18 -0.37 -12.03 16 3 C -0.29 -8.54 9.57 -14.93 -0.14 -8.68 16 4 H 0.10 3.17 7.19 -52.48 -0.38 2.80 16 5 C 0.03 0.68 5.43 -17.47 -0.09 0.59 16 6 N -0.89 -23.83 9.50 55.50 0.53 -23.30 16 7 Si 0.93 21.51 29.56 -169.99 -5.02 16.49 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.47 12.19 6.56 -10.98 -0.07 12.12 16 12 O -0.58 -17.07 15.90 5.55 0.09 -16.98 16 13 C 0.11 2.13 1.24 -132.97 -0.16 1.96 16 14 N -0.67 -11.78 3.60 -53.55 -0.19 -11.97 16 15 C 0.65 12.44 7.93 54.05 0.43 12.86 16 16 O -0.54 -12.23 11.51 -19.28 -0.22 -12.45 16 17 O -0.37 -6.09 9.94 -40.31 -0.40 -6.49 16 18 C 0.14 1.93 1.13 -90.62 -0.10 1.83 16 19 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 20 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 21 C -0.18 -2.82 8.24 37.16 0.31 -2.51 16 22 C -0.15 -2.46 9.97 -26.69 -0.27 -2.73 16 23 C -0.16 -2.37 10.16 -26.69 -0.27 -2.64 16 24 H 0.03 0.54 4.04 -51.93 -0.21 0.33 16 25 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 26 H 0.06 1.53 7.16 -51.93 -0.37 1.16 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.40 5.78 7.88 -40.82 -0.32 5.46 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.38 6.09 -51.93 -0.32 1.06 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.77 5.94 -51.93 -0.31 1.46 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.11 2.05 7.70 -51.93 -0.40 1.65 16 40 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -33.92 332.87 -5.84 -39.76 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.03 Total: 9.09 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 0.76 Total: 12.85 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.04 Total: -47.30 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.53 Total: -35.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.92 -5.84 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151538531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.880 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds