Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 C 1.53001 * 109.47233 * 240.00070 * 2 1 3 5 5 O 1.45202 * 109.47119 * 119.99836 * 2 1 3 6 6 C 1.34635 * 117.00098 * 60.00172 * 5 2 1 7 7 O 1.21518 * 119.99986 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00266 * 179.97438 * 6 5 2 9 9 C 1.47426 * 125.64489 * 0.04256 * 8 6 5 10 10 C 1.54914 * 104.82992 * 204.09098 * 9 8 6 11 11 C 1.55405 * 101.66697 * 323.07703 * 10 9 8 12 12 H 1.09000 * 110.69068 * 277.04987 * 11 10 9 13 13 N 1.46495 * 110.85076 * 153.69955 * 11 10 9 14 14 C 1.34776 * 119.99803 * 160.08868 * 13 11 10 15 15 O 1.21684 * 119.99821 * 359.97438 * 14 13 11 16 16 C 1.46375 * 120.00107 * 180.02562 * 14 13 11 17 17 H 1.08002 * 119.99508 * 359.97438 * 16 14 13 18 18 C 1.40043 * 120.00192 * 179.97438 * 16 14 13 19 19 N 1.30678 * 120.00069 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00256 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47009 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47065 * 119.99637 * 20 18 16 23 23 H 1.48498 * 109.47650 * 239.99931 * 20 18 16 24 24 C 1.47018 * 125.64993 * 180.02562 * 8 6 5 25 25 H 1.08997 * 109.47145 * 299.99766 * 1 2 3 26 26 H 1.08992 * 109.47030 * 60.00191 * 1 2 3 27 27 H 1.09002 * 109.46639 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46965 * 300.00266 * 3 2 1 30 30 H 1.08995 * 109.47345 * 59.99748 * 3 2 1 31 31 H 1.08995 * 109.46907 * 299.99478 * 4 2 1 32 32 H 1.08992 * 109.47325 * 59.99920 * 4 2 1 33 33 H 1.09000 * 109.46711 * 180.02562 * 4 2 1 34 34 H 1.08999 * 110.36956 * 322.93474 * 9 8 6 35 35 H 1.09003 * 110.36599 * 85.25378 * 9 8 6 36 36 H 1.09000 * 111.00339 * 81.07133 * 10 9 8 37 37 H 1.09001 * 111.00161 * 204.91727 * 10 9 8 38 38 H 0.96997 * 120.00433 * 340.08762 * 13 11 10 39 39 H 0.96997 * 119.99791 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88241 * 298.39592 * 24 8 6 41 41 H 1.09000 * 109.88049 * 59.40721 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 2.9175 -2.1400 3.5010 10 6 3.5993 -3.3898 4.1118 11 6 2.4600 -4.4432 4.0251 12 1 1.7798 -4.3454 4.8712 13 7 3.0086 -5.7997 3.9532 14 6 2.2356 -6.8569 4.2718 15 8 1.0824 -6.6845 4.6196 16 6 2.7838 -8.2122 4.2006 17 1 3.8075 -8.3651 3.8922 18 6 1.9809 -9.3107 4.5321 19 7 0.7423 -9.1256 4.9057 20 14 2.6802 -11.0404 4.4405 21 1 4.0953 -10.9792 3.9943 22 1 2.6116 -11.6737 5.7819 23 1 1.8899 -11.8433 3.4730 24 6 1.7494 -4.0713 2.7067 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 3.6664 -1.4575 3.0993 35 1 2.3072 -1.6363 4.2507 36 1 4.4587 -3.6966 3.5157 37 1 3.8882 -3.2103 5.1474 38 1 3.9279 -5.9371 3.6763 39 1 0.1864 -9.8864 5.1357 40 1 0.6720 -4.1914 2.8198 41 1 2.1104 -4.7075 1.8986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153807133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -119.167531 kcal Electronic energy + Delta-G solvation = -22922.272465 eV Core-core repulsion = 19416.293191 eV Total energy + Delta-G solvation = -3505.979275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70931 -38.81148 -37.06230 -36.15117 -34.13850 -33.04498 -32.27326 -30.16542 -28.30031 -27.54905 -27.47474 -26.09775 -23.84028 -21.67419 -20.90845 -19.54982 -19.25761 -17.91328 -17.09033 -16.67263 -16.39643 -15.55606 -15.27306 -14.96593 -14.38390 -14.27344 -13.99982 -13.67895 -13.22452 -13.10473 -12.65798 -12.55950 -12.38166 -12.26897 -12.04581 -12.00017 -11.96915 -11.75873 -11.44736 -11.33091 -11.17985 -11.07374 -10.88587 -10.55129 -10.47268 -10.37822 -10.21244 -9.94368 -8.89593 -8.55795 -7.72507 -7.64115 -6.22555 -4.68406 2.16702 2.97677 3.11915 3.20350 3.24526 3.92550 4.08636 4.50709 4.59150 4.61234 4.63723 4.78224 4.79228 4.94461 5.25768 5.30464 5.39272 5.42861 5.53966 5.56279 5.60648 5.63847 5.69782 5.74576 5.81510 5.83313 6.00922 6.06799 6.20417 6.20547 6.33517 6.34518 6.53851 6.56577 7.40481 7.63297 7.83785 7.99933 8.27768 8.46761 8.99087 9.44141 10.54691 10.72642 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.003282 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.953695 B = 8528.535460 C = 8809.109685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.664 3.336 7 O -0.568 6.568 8 N -0.601 5.601 9 C 0.107 3.893 10 C -0.141 4.141 11 C 0.152 3.848 12 H 0.095 0.905 13 N -0.755 5.755 14 C 0.553 3.447 15 O -0.577 6.577 16 C -0.543 4.543 17 H 0.069 0.931 18 C 0.087 3.913 19 N -0.766 5.766 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.114 3.886 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.383 0.617 39 H 0.268 0.732 40 H 0.073 0.927 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.748 18.038 -6.659 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.419 3.581 7 O -0.457 6.457 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.179 4.179 11 C 0.044 3.956 12 H 0.112 0.888 13 N -0.410 5.410 14 C 0.358 3.642 15 O -0.459 6.459 16 C -0.580 4.580 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.394 5.394 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.009 4.009 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.216 0.784 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.449 18.001 -6.706 19.718 hybrid contribution 0.711 -0.861 -0.294 1.155 sum 5.160 17.140 -7.000 19.220 Atomic orbital electron populations 1.22516 0.94081 1.05244 1.02252 1.22027 0.94378 0.91411 0.82356 1.21841 1.02132 0.92667 1.02959 1.22516 1.01458 1.03708 0.96388 1.86284 1.71702 1.23780 1.46188 1.17501 0.78984 0.80225 0.81384 1.90904 1.41448 1.70426 1.42914 1.47229 1.52881 1.13154 1.20951 1.22290 0.93472 0.96673 0.89158 1.23136 0.98400 0.94488 1.01919 1.21485 0.94396 0.84228 0.95532 0.88754 1.46171 1.15546 1.03808 1.75479 1.18290 0.85050 0.84011 0.76887 1.90614 1.18136 1.85475 1.51717 1.20900 0.99154 0.89405 1.48572 0.91304 1.25714 0.94271 1.00529 0.92793 1.70025 1.06217 1.31499 1.31687 0.86306 0.79868 0.82207 0.78315 1.18771 1.20166 1.20151 1.22656 1.01438 0.77754 0.99061 0.92229 0.91307 0.89248 0.91566 0.90282 0.91547 0.89258 0.91303 0.92265 0.90352 0.91107 0.90275 0.89307 0.78438 0.92086 0.90813 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 2 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16 3 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 4 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 5 O -0.36 -5.12 9.42 -40.31 -0.38 -5.50 16 6 C 0.66 11.07 7.93 54.05 0.43 11.50 16 7 O -0.57 -10.82 12.21 -19.29 -0.24 -11.06 16 8 N -0.60 -9.60 3.33 -176.30 -0.59 -10.18 16 9 C 0.11 1.32 6.93 -2.53 -0.02 1.30 16 10 C -0.14 -1.78 6.71 -24.44 -0.16 -1.95 16 11 C 0.15 2.71 3.25 -65.96 -0.21 2.50 16 12 H 0.09 1.87 7.70 -51.93 -0.40 1.47 16 13 N -0.76 -15.87 5.13 -53.31 -0.27 -16.14 16 14 C 0.55 15.15 7.74 -12.99 -0.10 15.05 16 15 O -0.58 -18.10 14.75 5.20 0.08 -18.02 16 16 C -0.54 -14.97 9.54 -35.63 -0.34 -15.31 16 17 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 18 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 19 N -0.77 -22.68 11.83 55.55 0.66 -22.02 16 20 Si 0.91 19.90 29.56 -169.99 -5.02 14.87 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.11 2.11 6.61 -3.07 -0.02 2.09 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.38 7.03 8.50 -40.82 -0.35 6.68 16 39 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -34.52 338.06 -6.73 -41.24 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.38 Total: 7.14 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 0.33 Total: 14.58 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.20 Total: -48.35 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.54 Total: -34.58 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.52 -6.73 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153807133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.923 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds