Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 C 1.53001 * 109.47233 * 240.00070 * 2 1 3 5 5 O 1.45202 * 109.47119 * 119.99836 * 2 1 3 6 6 C 1.34635 * 117.00098 * 60.00172 * 5 2 1 7 7 O 1.21518 * 119.99986 * 0.02562 * 6 5 2 8 8 N 1.34775 * 120.00266 * 179.97438 * 6 5 2 9 9 C 1.47426 * 125.64489 * 0.04256 * 8 6 5 10 10 C 1.54914 * 104.82992 * 204.09098 * 9 8 6 11 11 C 1.55405 * 101.66697 * 323.07703 * 10 9 8 12 12 H 1.09000 * 110.69068 * 277.04987 * 11 10 9 13 13 N 1.46495 * 110.85076 * 153.69955 * 11 10 9 14 14 C 1.34776 * 119.99803 * 160.08868 * 13 11 10 15 15 O 1.21684 * 119.99821 * 359.97438 * 14 13 11 16 16 C 1.46375 * 120.00107 * 180.02562 * 14 13 11 17 17 H 1.08002 * 119.99508 * 359.97438 * 16 14 13 18 18 C 1.40043 * 120.00192 * 179.97438 * 16 14 13 19 19 N 1.30678 * 120.00069 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00256 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47009 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47065 * 119.99637 * 20 18 16 23 23 H 1.48498 * 109.47650 * 239.99931 * 20 18 16 24 24 C 1.47018 * 125.64993 * 180.02562 * 8 6 5 25 25 H 1.08997 * 109.47145 * 299.99766 * 1 2 3 26 26 H 1.08992 * 109.47030 * 60.00191 * 1 2 3 27 27 H 1.09002 * 109.46639 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46965 * 300.00266 * 3 2 1 30 30 H 1.08995 * 109.47345 * 59.99748 * 3 2 1 31 31 H 1.08995 * 109.46907 * 299.99478 * 4 2 1 32 32 H 1.08992 * 109.47325 * 59.99920 * 4 2 1 33 33 H 1.09000 * 109.46711 * 180.02562 * 4 2 1 34 34 H 1.08999 * 110.36956 * 322.93474 * 9 8 6 35 35 H 1.09003 * 110.36599 * 85.25378 * 9 8 6 36 36 H 1.09000 * 111.00339 * 81.07133 * 10 9 8 37 37 H 1.09001 * 111.00161 * 204.91727 * 10 9 8 38 38 H 0.96997 * 120.00433 * 340.08762 * 13 11 10 39 39 H 0.96997 * 119.99791 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88241 * 298.39592 * 24 8 6 41 41 H 1.09000 * 109.88049 * 59.40721 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0681 -2.6657 2.4167 9 6 2.9175 -2.1400 3.5010 10 6 3.5993 -3.3898 4.1118 11 6 2.4600 -4.4432 4.0251 12 1 1.7798 -4.3454 4.8712 13 7 3.0086 -5.7997 3.9532 14 6 2.2356 -6.8569 4.2718 15 8 1.0824 -6.6845 4.6196 16 6 2.7838 -8.2122 4.2006 17 1 3.8075 -8.3651 3.8922 18 6 1.9809 -9.3107 4.5321 19 7 0.7423 -9.1256 4.9057 20 14 2.6802 -11.0404 4.4405 21 1 4.0953 -10.9792 3.9943 22 1 2.6116 -11.6737 5.7819 23 1 1.8899 -11.8433 3.4730 24 6 1.7494 -4.0713 2.7067 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 3.6664 -1.4575 3.0993 35 1 2.3072 -1.6363 4.2507 36 1 4.4587 -3.6966 3.5157 37 1 3.8882 -3.2103 5.1474 38 1 3.9279 -5.9371 3.6763 39 1 0.1864 -9.8864 5.1357 40 1 0.6720 -4.1914 2.8198 41 1 2.1104 -4.7075 1.8986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153807133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -144.594504 kcal Electronic energy + Delta-G solvation = -22923.375062 eV Core-core repulsion = 19416.293191 eV Total energy + Delta-G solvation = -3507.081871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92109 -40.23672 -38.77346 -37.55592 -35.31974 -34.76483 -34.23390 -31.55337 -29.81565 -28.38107 -28.28367 -28.08026 -25.15945 -22.79228 -22.50477 -21.25327 -20.46823 -19.37948 -18.80827 -17.94556 -17.55358 -17.41498 -16.71251 -16.15098 -15.86683 -15.70414 -15.37354 -14.75769 -14.70061 -14.42861 -14.32207 -13.92379 -13.58569 -13.33967 -13.25034 -13.05528 -12.91270 -12.86807 -12.83974 -12.73618 -12.59162 -12.48631 -12.44130 -12.25859 -11.97679 -11.78264 -11.41343 -11.15876 -10.94672 -9.89026 -9.87650 -9.56805 -8.29125 -6.85225 0.95703 1.40988 1.41742 1.59248 1.67636 2.24947 2.46514 2.80653 3.10967 3.47080 3.53232 3.75094 3.79235 3.82916 3.94521 4.11592 4.19609 4.32986 4.47730 4.56939 4.60358 4.71659 4.74210 4.75507 4.81065 4.83086 4.88534 5.01490 5.04275 5.13747 5.20696 5.27578 5.33421 5.34190 5.43111 5.88208 6.20570 6.26504 6.37335 6.87807 7.19436 7.53196 8.48943 8.67413 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.003282 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.953695 B = 8528.535460 C = 8809.109685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.121 3.879 3 C -0.131 4.131 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.661 3.339 7 O -0.600 6.600 8 N -0.603 5.603 9 C 0.107 3.893 10 C -0.120 4.120 11 C 0.148 3.852 12 H 0.071 0.929 13 N -0.741 5.741 14 C 0.539 3.461 15 O -0.628 6.628 16 C -0.570 4.570 17 H 0.090 0.910 18 C 0.027 3.973 19 N -0.821 5.821 20 Si 0.997 3.003 21 H -0.245 1.245 22 H -0.268 1.268 23 H -0.272 1.272 24 C 0.126 3.874 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.400 0.600 39 H 0.274 0.726 40 H 0.037 0.963 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.432 19.500 -7.052 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.085 3.915 3 C -0.188 4.188 4 C -0.237 4.237 5 O -0.272 6.272 6 C 0.416 3.584 7 O -0.491 6.491 8 N -0.344 5.344 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.040 3.960 12 H 0.089 0.911 13 N -0.395 5.395 14 C 0.343 3.657 15 O -0.515 6.515 16 C -0.607 4.607 17 H 0.108 0.892 18 C -0.188 4.188 19 N -0.451 5.451 20 Si 0.817 3.183 21 H -0.168 1.168 22 H -0.193 1.193 23 H -0.198 1.198 24 C 0.002 3.998 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.203 19.537 -7.108 22.002 hybrid contribution -0.158 -1.194 -0.237 1.227 sum 7.046 18.343 -7.345 20.977 Atomic orbital electron populations 1.22484 0.94392 1.03225 1.03755 1.22504 0.94450 0.93079 0.81439 1.21864 1.02600 0.89846 1.04483 1.22475 1.01794 1.01873 0.97594 1.86302 1.71435 1.21981 1.47513 1.17669 0.78591 0.81040 0.81058 1.90900 1.42753 1.71339 1.44140 1.47212 1.53302 1.12088 1.21812 1.22566 0.93714 0.96817 0.88353 1.23117 0.96550 0.92017 1.04115 1.21549 0.96418 0.83996 0.94036 0.91078 1.45749 1.15661 1.04055 1.74036 1.18624 0.84805 0.85691 0.76550 1.90573 1.20394 1.86555 1.53980 1.21463 1.00315 0.90061 1.48860 0.89225 1.26972 0.94336 1.05927 0.91529 1.70195 1.08290 1.33459 1.33138 0.84974 0.79654 0.75088 0.78588 1.16834 1.19312 1.19763 1.22237 0.99225 0.79574 0.98804 0.91854 0.88689 0.92927 0.90824 0.87760 0.91025 0.92867 0.88747 0.91617 0.87487 0.89691 0.88643 0.86533 0.76565 0.91633 0.94461 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.37 71.98 0.60 -3.41 16 2 C 0.12 2.59 1.13 -10.79 -0.01 2.57 16 3 C -0.13 -1.68 8.85 71.98 0.64 -1.04 16 4 C -0.18 -3.88 8.37 71.98 0.60 -3.27 16 5 O -0.36 -9.61 9.42 -55.44 -0.52 -10.13 16 6 C 0.66 22.29 7.93 129.79 1.03 23.32 16 7 O -0.60 -24.06 12.21 19.78 0.24 -23.82 16 8 N -0.60 -19.27 3.33 -942.09 -3.13 -22.41 16 9 C 0.11 2.37 6.93 86.86 0.60 2.97 16 10 C -0.12 -2.73 6.71 32.08 0.22 -2.51 16 11 C 0.15 5.35 3.25 46.27 0.15 5.50 16 12 H 0.07 2.94 7.70 -2.39 -0.02 2.92 16 13 N -0.74 -31.51 5.13 -440.79 -2.26 -33.77 16 14 C 0.54 30.50 7.74 86.36 0.67 31.17 16 15 O -0.63 -41.51 14.75 -4.30 -0.06 -41.58 16 16 C -0.57 -31.76 9.54 24.83 0.24 -31.52 16 17 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 18 C 0.03 1.52 5.50 85.30 0.47 1.99 16 19 N -0.82 -50.30 11.83 21.83 0.26 -50.04 16 20 Si 1.00 40.79 29.56 68.60 2.03 42.82 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 C 0.13 4.90 6.61 86.73 0.57 5.48 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.58 5.88 -2.39 -0.01 1.57 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.56 5.88 -2.39 -0.01 1.54 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.93 8.01 -2.39 -0.02 1.91 16 37 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.40 14.31 8.50 -92.71 -0.79 13.52 16 39 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 2.26 8.03 -2.39 -0.02 2.24 16 Total: -1.00 -80.85 338.06 2.56 -78.29 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.24 Total: 29.39 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 5.77 Total: 31.24 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -5.14 Total: -106.22 kcal Atomic # 8 Polarization: -75.18 SS G_CDS: -0.34 Total: -75.53 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -80.85 2.56 -78.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153807133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.309 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds