Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46895 * 2 1 4 4 C 1.52989 * 109.47473 * 239.99945 * 2 1 3 5 5 O 1.45205 * 109.46813 * 119.99557 * 2 1 3 6 6 C 1.34628 * 116.99565 * 60.00349 * 5 2 1 7 7 O 1.21514 * 120.00557 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47426 * 125.65227 * 0.02562 * 8 6 5 10 10 C 1.54903 * 104.83476 * 155.83616 * 9 8 6 11 11 C 1.55157 * 101.58068 * 37.01308 * 10 9 8 12 12 H 1.08992 * 110.72036 * 83.03978 * 11 10 9 13 13 N 1.46504 * 110.71782 * 206.13309 * 11 10 9 14 14 C 1.34777 * 119.99854 * 204.99701 * 13 11 10 15 15 O 1.21693 * 120.00018 * 0.02562 * 14 13 11 16 16 C 1.46377 * 120.00307 * 180.27510 * 14 13 11 17 17 H 1.08001 * 119.99387 * 359.73219 * 16 14 13 18 18 C 1.40043 * 120.00458 * 179.72666 * 16 14 13 19 19 N 1.30674 * 120.00000 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00093 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48513 * 109.47252 * 120.00033 * 20 18 16 23 23 H 1.48503 * 109.47413 * 239.99785 * 20 18 16 24 24 C 1.47032 * 125.64949 * 179.97438 * 8 6 5 25 25 H 1.09000 * 109.47175 * 300.00500 * 1 2 3 26 26 H 1.09004 * 109.46493 * 60.00282 * 1 2 3 27 27 H 1.08994 * 109.46711 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46614 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47000 * 299.99833 * 3 2 1 30 30 H 1.09000 * 109.47099 * 59.99848 * 3 2 1 31 31 H 1.09006 * 109.47181 * 300.00158 * 4 2 1 32 32 H 1.08998 * 109.47599 * 59.99919 * 4 2 1 33 33 H 1.09002 * 109.47743 * 179.97438 * 4 2 1 34 34 H 1.08999 * 110.36216 * 36.99975 * 9 8 6 35 35 H 1.09000 * 110.45928 * 274.72735 * 9 8 6 36 36 H 1.08998 * 111.00847 * 278.94106 * 10 9 8 37 37 H 1.09004 * 111.00401 * 155.08656 * 10 9 8 38 38 H 0.97000 * 120.00410 * 25.00427 * 13 11 10 39 39 H 0.96998 * 119.99723 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.88061 * 61.67453 * 24 8 6 41 41 H 1.09002 * 109.87685 * 300.50794 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0680 -2.6655 2.4168 9 6 2.9176 -2.1401 3.5010 10 6 2.5995 -3.0362 4.7238 11 6 2.4150 -4.4234 4.0538 12 1 3.3791 -4.9065 3.8953 13 7 1.5367 -5.2754 4.8594 14 6 1.6298 -6.6168 4.7677 15 8 2.4437 -7.1203 4.0160 16 6 0.7483 -7.4682 5.5681 17 1 0.0261 -7.0213 6.2354 18 6 0.8411 -8.8620 5.4685 19 7 1.7150 -9.4026 4.6614 20 14 -0.2845 -9.9483 6.4895 21 1 -1.1774 -9.0973 7.3163 22 1 -1.1052 -10.7965 5.5880 23 1 0.5338 -10.8150 7.3753 24 6 1.7484 -4.0710 2.7074 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 2.6616 -1.1023 3.7144 35 1 3.9711 -2.2229 3.2337 36 1 1.6815 -2.7147 5.2156 37 1 3.4332 -3.0493 5.4260 38 1 0.8882 -4.8742 5.4588 39 1 1.7790 -10.3680 4.5922 40 1 2.1438 -4.7116 1.9191 41 1 0.6684 -4.1973 2.7839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153807237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = -119.373512 kcal Electronic energy + Delta-G solvation = -22899.548503 eV Core-core repulsion = 19393.560297 eV Total energy + Delta-G solvation = -3505.988207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72053 -38.82327 -37.07082 -36.16257 -34.14735 -33.04880 -32.27630 -30.17287 -28.30869 -27.55469 -27.48219 -26.10424 -23.83857 -21.67478 -20.90133 -19.56674 -19.27963 -17.92100 -17.11530 -16.66856 -16.40284 -15.56303 -15.26887 -14.96775 -14.38723 -14.28555 -14.00167 -13.68478 -13.20622 -13.08592 -12.66400 -12.57196 -12.39778 -12.29354 -12.05412 -12.00782 -11.97338 -11.75557 -11.45568 -11.33813 -11.19157 -11.07645 -10.89144 -10.54792 -10.47836 -10.38669 -10.21260 -9.95457 -8.89920 -8.57214 -7.72776 -7.64304 -6.22882 -4.68746 2.15794 2.96555 3.11719 3.20209 3.24403 3.91804 4.08420 4.50056 4.58709 4.61154 4.63173 4.77510 4.80361 4.94868 5.26173 5.29902 5.38611 5.42530 5.53329 5.56028 5.60443 5.63454 5.70260 5.73798 5.81141 5.83050 6.01226 6.05958 6.19512 6.19564 6.32057 6.33209 6.52501 6.55947 7.40223 7.62244 7.83634 7.99687 8.27519 8.45603 8.98787 9.43767 10.54306 10.72247 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034714 B = 0.003240 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.403897 B = 8639.787428 C = 8889.496485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.664 3.336 7 O -0.568 6.568 8 N -0.601 5.601 9 C 0.107 3.893 10 C -0.141 4.141 11 C 0.150 3.850 12 H 0.098 0.902 13 N -0.755 5.755 14 C 0.553 3.447 15 O -0.578 6.578 16 C -0.543 4.543 17 H 0.069 0.931 18 C 0.087 3.913 19 N -0.766 5.766 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C 0.113 3.887 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.383 0.617 39 H 0.268 0.732 40 H 0.073 0.927 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 19.676 -4.415 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.419 3.581 7 O -0.457 6.457 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.180 4.180 11 C 0.042 3.958 12 H 0.116 0.884 13 N -0.409 5.409 14 C 0.358 3.642 15 O -0.460 6.460 16 C -0.580 4.580 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.394 5.394 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.010 4.010 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.216 0.784 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.023 19.042 -5.424 19.826 hybrid contribution -0.909 -0.291 0.657 1.159 sum 0.114 18.751 -4.767 19.348 Atomic orbital electron populations 1.22518 0.94097 1.05212 1.02235 1.22030 0.94350 0.91422 0.82371 1.21843 1.02172 0.92650 1.02941 1.22516 1.01510 1.03697 0.96366 1.86286 1.71699 1.23779 1.46170 1.17500 0.78980 0.80209 0.81386 1.90901 1.41491 1.70431 1.42916 1.47225 1.52795 1.13169 1.21019 1.22289 0.94804 0.98331 0.86193 1.23109 1.03048 0.95122 0.96708 1.21465 0.95763 0.89896 0.88709 0.88392 1.46166 1.41111 1.07007 1.46660 1.18297 0.84049 0.79070 0.82815 1.90614 1.40258 1.72832 1.42303 1.20902 1.20447 0.90686 1.25978 0.91296 1.25714 0.94739 0.98494 0.94357 1.70025 1.28634 1.11453 1.29320 0.86306 0.80374 0.80021 0.80001 1.18766 1.20150 1.20155 1.22666 1.01386 0.77738 0.99162 0.92265 0.91303 0.89261 0.91539 0.90279 0.91565 0.89252 0.91304 0.92228 0.90384 0.91096 0.90307 0.89317 0.78449 0.92085 0.90856 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 2 C 0.14 1.54 1.13 -90.62 -0.10 1.43 16 3 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 4 C -0.18 -2.08 8.37 37.15 0.31 -1.77 16 5 O -0.36 -5.08 9.42 -40.29 -0.38 -5.46 16 6 C 0.66 10.97 7.93 54.06 0.43 11.40 16 7 O -0.57 -10.70 12.21 -19.28 -0.24 -10.94 16 8 N -0.60 -9.51 3.33 -176.30 -0.59 -10.09 16 9 C 0.11 1.32 6.92 -2.53 -0.02 1.30 16 10 C -0.14 -1.80 6.71 -24.59 -0.17 -1.97 16 11 C 0.15 2.68 3.32 -66.10 -0.22 2.46 16 12 H 0.10 1.96 7.55 -51.93 -0.39 1.57 16 13 N -0.75 -15.85 5.10 -53.44 -0.27 -16.12 16 14 C 0.55 15.14 7.75 -12.99 -0.10 15.04 16 15 O -0.58 -18.11 14.66 5.20 0.08 -18.03 16 16 C -0.54 -14.95 9.54 -35.63 -0.34 -15.29 16 17 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 18 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 19 N -0.77 -22.66 11.83 55.55 0.66 -22.00 16 20 Si 0.91 19.87 29.56 -169.99 -5.02 14.85 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 C 0.11 2.07 6.62 -3.06 -0.02 2.05 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.83 8.04 -51.93 -0.42 0.42 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.38 7.04 8.54 -40.82 -0.35 6.69 16 39 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -34.42 337.92 -6.73 -41.15 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.37 Total: 7.14 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 0.32 Total: 14.42 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.20 Total: -48.22 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.54 Total: -34.43 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.42 -6.73 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153807237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.225 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds