Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46895 * 2 1 4 4 C 1.52989 * 109.47473 * 239.99945 * 2 1 3 5 5 O 1.45205 * 109.46813 * 119.99557 * 2 1 3 6 6 C 1.34628 * 116.99565 * 60.00349 * 5 2 1 7 7 O 1.21514 * 120.00557 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47426 * 125.65227 * 0.02562 * 8 6 5 10 10 C 1.54903 * 104.83476 * 155.83616 * 9 8 6 11 11 C 1.55157 * 101.58068 * 37.01308 * 10 9 8 12 12 H 1.08992 * 110.72036 * 83.03978 * 11 10 9 13 13 N 1.46504 * 110.71782 * 206.13309 * 11 10 9 14 14 C 1.34777 * 119.99854 * 204.99701 * 13 11 10 15 15 O 1.21693 * 120.00018 * 0.02562 * 14 13 11 16 16 C 1.46377 * 120.00307 * 180.27510 * 14 13 11 17 17 H 1.08001 * 119.99387 * 359.73219 * 16 14 13 18 18 C 1.40043 * 120.00458 * 179.72666 * 16 14 13 19 19 N 1.30674 * 120.00000 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00093 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47199 * 0.02562 * 20 18 16 22 22 H 1.48513 * 109.47252 * 120.00033 * 20 18 16 23 23 H 1.48503 * 109.47413 * 239.99785 * 20 18 16 24 24 C 1.47032 * 125.64949 * 179.97438 * 8 6 5 25 25 H 1.09000 * 109.47175 * 300.00500 * 1 2 3 26 26 H 1.09004 * 109.46493 * 60.00282 * 1 2 3 27 27 H 1.08994 * 109.46711 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46614 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47000 * 299.99833 * 3 2 1 30 30 H 1.09000 * 109.47099 * 59.99848 * 3 2 1 31 31 H 1.09006 * 109.47181 * 300.00158 * 4 2 1 32 32 H 1.08998 * 109.47599 * 59.99919 * 4 2 1 33 33 H 1.09002 * 109.47743 * 179.97438 * 4 2 1 34 34 H 1.08999 * 110.36216 * 36.99975 * 9 8 6 35 35 H 1.09000 * 110.45928 * 274.72735 * 9 8 6 36 36 H 1.08998 * 111.00847 * 278.94106 * 10 9 8 37 37 H 1.09004 * 111.00401 * 155.08656 * 10 9 8 38 38 H 0.97000 * 120.00410 * 25.00427 * 13 11 10 39 39 H 0.96998 * 119.99723 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.88061 * 61.67453 * 24 8 6 41 41 H 1.09002 * 109.87685 * 300.50794 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0680 -2.6655 2.4168 9 6 2.9176 -2.1401 3.5010 10 6 2.5995 -3.0362 4.7238 11 6 2.4150 -4.4234 4.0538 12 1 3.3791 -4.9065 3.8953 13 7 1.5367 -5.2754 4.8594 14 6 1.6298 -6.6168 4.7677 15 8 2.4437 -7.1203 4.0160 16 6 0.7483 -7.4682 5.5681 17 1 0.0261 -7.0213 6.2354 18 6 0.8411 -8.8620 5.4685 19 7 1.7150 -9.4026 4.6614 20 14 -0.2845 -9.9483 6.4895 21 1 -1.1774 -9.0973 7.3163 22 1 -1.1052 -10.7965 5.5880 23 1 0.5338 -10.8150 7.3753 24 6 1.7484 -4.0710 2.7074 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 2.6616 -1.1023 3.7144 35 1 3.9711 -2.2229 3.2337 36 1 1.6815 -2.7147 5.2156 37 1 3.4332 -3.0493 5.4260 38 1 0.8882 -4.8742 5.4588 39 1 1.7790 -10.3680 4.5922 40 1 2.1438 -4.7116 1.9191 41 1 0.6684 -4.1973 2.7839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153807237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = -144.615773 kcal Electronic energy + Delta-G solvation = -22900.643090 eV Core-core repulsion = 19393.560297 eV Total energy + Delta-G solvation = -3507.082793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92067 -40.24112 -38.77872 -37.55683 -35.31889 -34.76518 -34.23187 -31.55901 -29.81565 -28.37763 -28.28175 -28.08175 -25.15026 -22.78995 -22.49030 -21.28062 -20.46426 -19.38513 -18.81710 -17.93800 -17.55119 -17.41846 -16.69580 -16.14941 -15.87196 -15.69674 -15.36352 -14.74912 -14.68561 -14.43377 -14.33025 -13.93064 -13.57335 -13.33847 -13.25007 -13.05266 -12.91019 -12.86643 -12.85039 -12.73488 -12.58618 -12.49416 -12.45313 -12.26111 -11.97951 -11.77696 -11.41097 -11.15572 -10.94672 -9.89755 -9.87021 -9.56176 -8.29196 -6.85275 0.95995 1.41006 1.41859 1.59325 1.67921 2.25011 2.46330 2.80749 3.10786 3.47463 3.53851 3.75307 3.79504 3.83686 3.94726 4.12049 4.19517 4.32505 4.47913 4.56829 4.60649 4.71577 4.74187 4.75787 4.81014 4.83381 4.88645 5.01607 5.04578 5.13776 5.20561 5.27800 5.33447 5.34357 5.43255 5.88335 6.20328 6.26583 6.37354 6.87780 7.19581 7.52890 8.48752 8.67292 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034714 B = 0.003240 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.403897 B = 8639.787428 C = 8889.496485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 C -0.131 4.131 4 C -0.181 4.181 5 O -0.358 6.358 6 C 0.661 3.339 7 O -0.599 6.599 8 N -0.603 5.603 9 C 0.107 3.893 10 C -0.121 4.121 11 C 0.146 3.854 12 H 0.072 0.928 13 N -0.741 5.741 14 C 0.539 3.461 15 O -0.629 6.629 16 C -0.570 4.570 17 H 0.089 0.911 18 C 0.028 3.972 19 N -0.821 5.821 20 Si 0.997 3.003 21 H -0.246 1.246 22 H -0.272 1.272 23 H -0.268 1.268 24 C 0.125 3.875 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.399 0.601 39 H 0.274 0.726 40 H 0.039 0.961 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 22.236 -2.983 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 C -0.188 4.188 4 C -0.239 4.239 5 O -0.273 6.273 6 C 0.417 3.583 7 O -0.491 6.491 8 N -0.344 5.344 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.038 3.962 12 H 0.091 0.909 13 N -0.395 5.395 14 C 0.344 3.656 15 O -0.516 6.516 16 C -0.607 4.607 17 H 0.108 0.892 18 C -0.187 4.187 19 N -0.451 5.451 20 Si 0.817 3.183 21 H -0.169 1.169 22 H -0.198 1.198 23 H -0.193 1.193 24 C 0.001 3.999 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.361 21.699 -3.966 22.062 hybrid contribution -0.689 -0.984 0.115 1.206 sum -0.328 20.716 -3.851 21.073 Atomic orbital electron populations 1.22477 0.94113 1.03309 1.03826 1.22504 0.94631 0.93002 0.81331 1.21867 1.02496 0.89901 1.04554 1.22483 1.01676 1.01918 0.97775 1.86303 1.71466 1.22036 1.47469 1.17659 0.78610 0.81011 0.81041 1.90897 1.42804 1.71322 1.44043 1.47206 1.53203 1.12077 1.21922 1.22545 0.94950 0.99439 0.84489 1.23080 1.04945 0.90836 0.97063 1.21520 0.93664 0.92031 0.88938 0.90935 1.45748 1.41479 1.05595 1.46645 1.18626 0.83558 0.81134 0.82326 1.90573 1.42202 1.74518 1.44268 1.21461 1.21008 0.91679 1.26535 0.89242 1.26968 0.96231 1.00198 0.95351 1.70192 1.31081 1.12219 1.31568 0.84975 0.77855 0.77514 0.77967 1.16862 1.19757 1.19297 1.22254 1.00006 0.79209 0.98443 0.91630 0.88762 0.92805 0.91049 0.87762 0.90843 0.92871 0.88698 0.91885 0.87537 0.89761 0.88632 0.86814 0.76609 0.91621 0.94279 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.82 8.37 71.98 0.60 -3.21 16 2 C 0.12 2.56 1.13 -10.79 -0.01 2.55 16 3 C -0.13 -1.67 8.85 71.99 0.64 -1.03 16 4 C -0.18 -3.97 8.37 71.98 0.60 -3.36 16 5 O -0.36 -9.53 9.42 -55.37 -0.52 -10.06 16 6 C 0.66 22.01 7.93 129.79 1.03 23.04 16 7 O -0.60 -23.65 12.21 19.80 0.24 -23.41 16 8 N -0.60 -19.04 3.33 -942.10 -3.13 -22.17 16 9 C 0.11 2.39 6.92 86.85 0.60 2.99 16 10 C -0.12 -2.80 6.71 31.98 0.21 -2.58 16 11 C 0.15 5.30 3.32 46.18 0.15 5.45 16 12 H 0.07 3.03 7.55 -2.39 -0.02 3.02 16 13 N -0.74 -31.49 5.10 -441.19 -2.25 -33.74 16 14 C 0.54 30.46 7.75 86.36 0.67 31.13 16 15 O -0.63 -41.47 14.66 -4.33 -0.06 -41.53 16 16 C -0.57 -31.71 9.54 24.83 0.24 -31.47 16 17 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 18 C 0.03 1.53 5.50 85.30 0.47 2.00 16 19 N -0.82 -50.17 11.83 21.83 0.26 -49.92 16 20 Si 1.00 40.73 29.56 68.60 2.03 42.75 16 21 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 24 C 0.13 4.78 6.62 86.72 0.57 5.36 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.55 5.88 -2.39 -0.01 1.54 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.57 5.88 -2.38 -0.01 1.56 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.95 8.01 -2.39 -0.02 1.93 16 37 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.40 14.35 8.54 -92.71 -0.79 13.56 16 39 H 0.27 15.16 8.29 -92.71 -0.77 14.40 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 2.32 8.03 -2.39 -0.02 2.31 16 Total: -1.00 -80.23 337.92 2.58 -77.65 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.24 Total: 29.57 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 5.78 Total: 30.86 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -5.12 Total: -105.83 kcal Atomic # 8 Polarization: -74.66 SS G_CDS: -0.34 Total: -75.00 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -80.23 2.58 -77.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153807237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.965 kcal (2) G-P(sol) polarization free energy of solvation -80.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds