Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00472 * 2 1 4 4 C 1.52999 * 109.47505 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47009 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00423 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99922 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63144 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 233.55709 * 8 7 5 10 10 C 1.53070 * 109.29524 * 305.57804 * 9 8 7 11 11 N 1.46498 * 109.44278 * 181.23594 * 10 9 8 12 12 C 1.34776 * 119.99920 * 84.79819 * 11 10 9 13 13 O 1.21690 * 120.00113 * 359.97438 * 12 11 10 14 14 C 1.46375 * 120.00100 * 179.97438 * 12 11 10 15 15 H 1.08006 * 119.99593 * 0.02562 * 14 12 11 16 16 C 1.40045 * 120.00032 * 179.97438 * 14 12 11 17 17 N 1.30669 * 120.00119 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00071 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46746 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47232 * 120.00071 * 18 16 14 21 21 H 1.48502 * 109.47121 * 240.00131 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 10 9 8 23 23 C 1.46928 * 120.62874 * 0.02562 * 7 5 4 24 24 H 1.09000 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46919 * 300.00184 * 1 2 3 26 26 H 1.09001 * 109.46864 * 59.99698 * 1 2 3 27 27 H 1.09001 * 109.46976 * 59.99777 * 3 2 1 28 28 H 1.08997 * 109.47371 * 300.00230 * 3 2 1 29 29 H 1.09001 * 109.46917 * 60.00070 * 4 3 2 30 30 H 1.08997 * 109.47262 * 300.00625 * 4 3 2 31 31 H 1.09002 * 109.58751 * 353.41659 * 8 7 5 32 32 H 1.08996 * 109.58750 * 113.69843 * 8 7 5 33 33 H 1.08997 * 109.50046 * 65.38734 * 9 8 7 34 34 H 1.09003 * 109.49733 * 185.48713 * 9 8 7 35 35 H 1.09007 * 109.35101 * 301.12962 * 10 9 8 36 36 H 0.97004 * 120.00020 * 264.79513 * 11 10 9 37 37 H 0.97005 * 119.99745 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 22 10 9 39 39 H 1.09005 * 109.52615 * 58.67140 * 22 10 9 40 40 H 1.08998 * 109.58787 * 246.16207 * 23 7 5 41 41 H 1.09007 * 109.58600 * 6.44520 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1484 2.5612 0.0013 6 8 3.4357 3.5424 0.0008 7 7 5.4889 2.7021 0.0014 8 6 6.1012 4.0376 0.0014 9 6 7.0907 4.1297 -1.1645 10 6 8.0921 2.9758 -1.0703 11 7 9.0579 3.0776 -2.1671 12 6 10.1438 3.8654 -2.0378 13 8 10.3218 4.4925 -1.0102 14 6 11.1092 3.9667 -3.1335 15 1 10.9510 3.4105 -4.0457 16 6 12.2372 4.7857 -2.9993 17 7 12.4283 5.4590 -1.8959 18 14 13.4688 4.9156 -4.3979 19 1 13.0255 4.0612 -5.5287 20 1 13.5576 6.3273 -4.8498 21 1 14.8021 4.4618 -3.9270 22 6 7.3500 1.6409 -1.1667 23 6 6.3655 1.5230 0.0003 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8575 0.6435 -0.8891 30 1 3.8568 0.6437 0.8908 31 1 5.3262 4.7950 -0.1164 32 1 6.6286 4.1978 0.9418 33 1 6.5488 4.0624 -2.1078 34 1 7.6220 5.0802 -1.1165 35 1 8.6180 3.0308 -0.1171 36 1 8.9159 2.5780 -2.9864 37 1 13.2095 6.0266 -1.8032 38 1 8.0675 0.8216 -1.1217 39 1 6.8039 1.5948 -2.1090 40 1 6.9166 1.4765 0.9396 41 1 5.7645 0.6210 -0.1157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169852195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -128.932748 kcal Electronic energy + Delta-G solvation = -22448.262869 eV Core-core repulsion = 18941.860143 eV Total energy + Delta-G solvation = -3506.402726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30640 -38.35404 -37.79670 -36.46794 -33.72402 -32.47265 -32.27245 -30.74921 -30.26301 -27.00831 -26.39669 -24.67526 -23.72487 -22.69296 -20.75661 -19.56849 -18.97759 -17.67685 -17.07083 -16.55406 -16.29043 -15.69180 -15.39548 -15.27244 -15.00521 -14.76352 -14.12042 -14.04862 -13.83418 -13.34422 -13.11279 -12.79549 -12.49315 -12.43366 -12.10260 -11.91469 -11.72094 -11.61109 -11.43151 -11.12157 -11.08724 -11.01993 -10.52433 -10.44547 -10.27936 -10.16573 -9.96723 -9.82817 -8.88489 -8.69535 -7.63649 -7.54627 -6.20985 -4.66531 2.53166 2.79006 3.11228 3.19722 3.23873 3.57398 4.08079 4.44780 4.55585 4.66859 4.69868 4.76820 4.84211 5.04653 5.06444 5.15632 5.19491 5.21470 5.34750 5.42776 5.49558 5.53886 5.55300 5.65492 5.67810 5.82329 5.91165 5.99418 6.08852 6.28984 6.36582 6.68823 6.77481 6.82057 7.34990 7.41305 7.90230 8.07312 8.07995 8.30923 9.00577 9.50689 10.57439 10.76075 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.002831 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.787897 B = 9889.415129 C =10120.469557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.549 6.549 7 N -0.607 5.607 8 C 0.114 3.886 9 C -0.141 4.141 10 C 0.157 3.843 11 N -0.763 5.763 12 C 0.555 3.445 13 O -0.580 6.580 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.087 3.913 17 N -0.767 5.767 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.141 4.141 23 C 0.109 3.891 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.379 0.621 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 -10.887 2.695 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.179 4.179 5 C 0.307 3.693 6 O -0.427 6.427 7 N -0.340 5.340 8 C -0.009 4.009 9 C -0.181 4.181 10 C 0.050 3.950 11 N -0.417 5.417 12 C 0.359 3.641 13 O -0.463 6.463 14 C -0.583 4.583 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.180 4.180 23 C -0.015 4.015 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.211 0.789 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.156 -9.926 3.571 20.140 hybrid contribution 0.473 0.020 -1.157 1.250 sum -16.683 -9.906 2.414 19.552 Atomic orbital electron populations 1.22729 0.80647 1.02692 1.00214 1.87796 1.20031 1.28127 1.95576 1.22174 0.92010 0.84095 1.01783 1.21504 0.95278 0.95573 1.05582 1.20336 0.82023 0.90937 0.76015 1.90691 1.60529 1.40873 1.50633 1.48176 1.05173 1.08134 1.72496 1.21674 0.96462 0.83418 0.99320 1.22357 0.96736 1.01641 0.97337 1.20425 0.89151 0.91594 0.93830 1.46199 1.25541 1.52760 1.17204 1.18219 0.79488 0.77996 0.88378 1.90597 1.76623 1.47700 1.31364 1.20926 1.06805 1.29235 1.01289 0.91467 1.25705 0.97887 0.93815 0.95835 1.70027 1.24842 1.20301 1.24454 0.86335 0.80325 0.78551 0.81648 1.18810 1.20183 1.20171 1.22200 0.98227 0.99223 0.98360 1.21786 0.92600 0.87545 0.99538 0.89562 0.93980 0.93941 0.92404 0.92361 0.87935 0.88026 0.89214 0.91188 0.92228 0.89768 0.90516 0.78937 0.92174 0.90100 0.91430 0.90750 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.40 -4.01 10.70 -35.23 -0.38 -4.38 16 3 C 0.08 0.78 5.23 37.16 0.19 0.97 16 4 C -0.14 -1.34 4.42 -27.88 -0.12 -1.46 16 5 C 0.52 6.74 7.70 -10.98 -0.08 6.65 16 6 O -0.55 -9.00 15.39 5.56 0.09 -8.91 16 7 N -0.61 -7.75 2.98 -172.80 -0.51 -8.26 16 8 C 0.11 1.68 6.43 -3.71 -0.02 1.65 16 9 C -0.14 -2.41 5.66 -26.59 -0.15 -2.56 16 10 C 0.16 2.76 2.41 -67.88 -0.16 2.60 16 11 N -0.76 -16.16 5.07 -55.16 -0.28 -16.44 16 12 C 0.56 15.26 7.71 -12.99 -0.10 15.16 16 13 O -0.58 -18.16 14.68 5.20 0.08 -18.08 16 14 C -0.55 -15.12 9.54 -35.63 -0.34 -15.46 16 15 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 16 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 17 N -0.77 -22.74 11.83 55.55 0.66 -22.08 16 18 Si 0.91 19.93 29.56 -169.99 -5.02 14.91 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 22 C -0.14 -1.78 5.55 -26.64 -0.15 -1.93 16 23 C 0.11 1.14 6.34 -3.74 -0.02 1.11 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.10 0.86 7.69 -51.93 -0.40 0.46 16 30 H 0.10 0.82 7.94 -51.93 -0.41 0.40 16 31 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 36 H 0.38 7.11 8.58 -40.82 -0.35 6.76 16 37 H 0.27 7.18 8.29 -40.82 -0.34 6.85 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.66 5.93 -51.92 -0.31 0.35 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -35.32 339.37 -6.63 -41.94 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.42 Total: 5.79 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.05 Total: 10.41 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.14 Total: -46.78 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.22 Total: -31.38 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.32 -6.63 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169852195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.988 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds