Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00472 * 2 1 4 4 C 1.52999 * 109.47505 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47009 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00423 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99922 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63144 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 233.55709 * 8 7 5 10 10 C 1.53070 * 109.29524 * 305.57804 * 9 8 7 11 11 N 1.46498 * 109.44278 * 181.23594 * 10 9 8 12 12 C 1.34776 * 119.99920 * 84.79819 * 11 10 9 13 13 O 1.21690 * 120.00113 * 359.97438 * 12 11 10 14 14 C 1.46375 * 120.00100 * 179.97438 * 12 11 10 15 15 H 1.08006 * 119.99593 * 0.02562 * 14 12 11 16 16 C 1.40045 * 120.00032 * 179.97438 * 14 12 11 17 17 N 1.30669 * 120.00119 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00071 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46746 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47232 * 120.00071 * 18 16 14 21 21 H 1.48502 * 109.47121 * 240.00131 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 10 9 8 23 23 C 1.46928 * 120.62874 * 0.02562 * 7 5 4 24 24 H 1.09000 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46919 * 300.00184 * 1 2 3 26 26 H 1.09001 * 109.46864 * 59.99698 * 1 2 3 27 27 H 1.09001 * 109.46976 * 59.99777 * 3 2 1 28 28 H 1.08997 * 109.47371 * 300.00230 * 3 2 1 29 29 H 1.09001 * 109.46917 * 60.00070 * 4 3 2 30 30 H 1.08997 * 109.47262 * 300.00625 * 4 3 2 31 31 H 1.09002 * 109.58751 * 353.41659 * 8 7 5 32 32 H 1.08996 * 109.58750 * 113.69843 * 8 7 5 33 33 H 1.08997 * 109.50046 * 65.38734 * 9 8 7 34 34 H 1.09003 * 109.49733 * 185.48713 * 9 8 7 35 35 H 1.09007 * 109.35101 * 301.12962 * 10 9 8 36 36 H 0.97004 * 120.00020 * 264.79513 * 11 10 9 37 37 H 0.97005 * 119.99745 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 22 10 9 39 39 H 1.09005 * 109.52615 * 58.67140 * 22 10 9 40 40 H 1.08998 * 109.58787 * 246.16207 * 23 7 5 41 41 H 1.09007 * 109.58600 * 6.44520 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1484 2.5612 0.0013 6 8 3.4357 3.5424 0.0008 7 7 5.4889 2.7021 0.0014 8 6 6.1012 4.0376 0.0014 9 6 7.0907 4.1297 -1.1645 10 6 8.0921 2.9758 -1.0703 11 7 9.0579 3.0776 -2.1671 12 6 10.1438 3.8654 -2.0378 13 8 10.3218 4.4925 -1.0102 14 6 11.1092 3.9667 -3.1335 15 1 10.9510 3.4105 -4.0457 16 6 12.2372 4.7857 -2.9993 17 7 12.4283 5.4590 -1.8959 18 14 13.4688 4.9156 -4.3979 19 1 13.0255 4.0612 -5.5287 20 1 13.5576 6.3273 -4.8498 21 1 14.8021 4.4618 -3.9270 22 6 7.3500 1.6409 -1.1667 23 6 6.3655 1.5230 0.0003 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8575 0.6435 -0.8891 30 1 3.8568 0.6437 0.8908 31 1 5.3262 4.7950 -0.1164 32 1 6.6286 4.1978 0.9418 33 1 6.5488 4.0624 -2.1078 34 1 7.6220 5.0802 -1.1165 35 1 8.6180 3.0308 -0.1171 36 1 8.9159 2.5780 -2.9864 37 1 13.2095 6.0266 -1.8032 38 1 8.0675 0.8216 -1.1217 39 1 6.8039 1.5948 -2.1090 40 1 6.9166 1.4765 0.9396 41 1 5.7645 0.6210 -0.1157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169852195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -156.059352 kcal Electronic energy + Delta-G solvation = -22449.439167 eV Core-core repulsion = 18941.860143 eV Total energy + Delta-G solvation = -3507.579024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39468 -39.76851 -38.76469 -38.01169 -35.32456 -34.46953 -33.34502 -31.88609 -31.69787 -28.46765 -27.54942 -25.88079 -24.79229 -23.77749 -22.18263 -21.35652 -20.11664 -19.08023 -18.49090 -17.45244 -17.32300 -17.23151 -16.66827 -16.30420 -16.22590 -15.92791 -15.72377 -15.29578 -14.91112 -14.59527 -14.45940 -14.20931 -14.04889 -13.63142 -13.37098 -13.24015 -12.80934 -12.74657 -12.70790 -12.59589 -12.40407 -12.24184 -12.12347 -11.98776 -11.79557 -11.60720 -10.94102 -10.92355 -10.66503 -9.92800 -9.68533 -9.42946 -8.27947 -6.83940 1.39896 1.40415 1.53133 1.57849 1.81849 2.24722 2.48831 2.82005 3.10301 3.56510 3.64202 3.72139 3.97249 4.03107 4.06120 4.10195 4.22775 4.30255 4.43836 4.50981 4.53277 4.54020 4.60766 4.73018 4.76172 4.82087 4.84069 4.86920 4.88107 4.99112 5.15647 5.29117 5.33233 5.49047 5.90912 6.14469 6.26811 6.33278 6.35718 6.88582 7.06213 7.58931 8.52122 8.69672 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.002831 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.787897 B = 9889.415129 C =10120.469557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.078 3.922 4 C -0.130 4.130 5 C 0.517 3.483 6 O -0.589 6.589 7 N -0.606 5.606 8 C 0.123 3.877 9 C -0.130 4.130 10 C 0.153 3.847 11 N -0.751 5.751 12 C 0.540 3.460 13 O -0.630 6.630 14 C -0.574 4.574 15 H 0.086 0.914 16 C 0.028 3.972 17 N -0.822 5.822 18 Si 0.996 3.004 19 H -0.247 1.247 20 H -0.271 1.271 21 H -0.268 1.268 22 C -0.129 4.129 23 C 0.109 3.891 24 H 0.104 0.896 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.394 0.606 37 H 0.273 0.727 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -13.545 1.406 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.001 3.999 4 C -0.169 4.169 5 C 0.308 3.692 6 O -0.470 6.470 7 N -0.338 5.338 8 C 0.000 4.000 9 C -0.170 4.170 10 C 0.047 3.953 11 N -0.404 5.404 12 C 0.344 3.656 13 O -0.517 6.517 14 C -0.611 4.611 15 H 0.104 0.896 16 C -0.187 4.187 17 N -0.452 5.452 18 Si 0.815 3.185 19 H -0.170 1.170 20 H -0.196 1.196 21 H -0.193 1.193 22 C -0.168 4.168 23 C -0.013 4.013 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.861 -12.653 2.265 22.005 hybrid contribution 0.582 0.836 -0.724 1.250 sum -17.279 -11.817 1.541 20.990 Atomic orbital electron populations 1.22941 0.79307 1.04072 1.00722 1.87763 1.21557 1.27756 1.95624 1.22093 0.92611 0.84218 1.00996 1.21495 0.94520 0.93223 1.07712 1.20976 0.81570 0.91963 0.74737 1.90680 1.61368 1.42595 1.52336 1.48219 1.05636 1.07731 1.72260 1.21371 0.95552 0.85063 0.98041 1.22172 0.96773 0.99410 0.98669 1.20625 0.88545 0.94993 0.91129 1.45871 1.24611 1.51234 1.18675 1.18545 0.80971 0.78218 0.87842 1.90554 1.78189 1.49857 1.33091 1.21476 1.07568 1.29940 1.02070 0.89588 1.26950 1.00120 0.92742 0.98895 1.70193 1.26074 1.21468 1.27439 0.85001 0.76923 0.78884 0.77655 1.16989 1.19635 1.19335 1.22125 0.98533 0.95916 1.00180 1.22013 0.92410 0.87966 0.98892 0.87789 0.93446 0.93525 0.93204 0.93361 0.85727 0.85604 0.90107 0.91336 0.91812 0.94084 0.93577 0.77232 0.91693 0.88577 0.90030 0.89977 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.23 10.70 -148.98 -1.59 -8.82 16 3 C 0.08 1.44 5.23 71.98 0.38 1.81 16 4 C -0.13 -2.05 4.42 29.85 0.13 -1.92 16 5 C 0.52 12.45 7.70 87.66 0.67 13.13 16 6 O -0.59 -19.05 15.39 -3.01 -0.05 -19.10 16 7 N -0.61 -14.40 2.98 -819.01 -2.44 -16.83 16 8 C 0.12 3.70 6.43 86.36 0.56 4.25 16 9 C -0.13 -4.61 5.66 30.68 0.17 -4.43 16 10 C 0.15 5.42 2.41 45.03 0.11 5.53 16 11 N -0.75 -32.07 5.07 -446.64 -2.27 -34.34 16 12 C 0.54 30.64 7.71 86.36 0.67 31.30 16 13 O -0.63 -41.47 14.68 -4.32 -0.06 -41.54 16 14 C -0.57 -32.12 9.54 24.83 0.24 -31.88 16 15 H 0.09 4.32 7.85 -2.91 -0.02 4.29 16 16 C 0.03 1.54 5.50 85.30 0.47 2.01 16 17 N -0.82 -50.25 11.83 21.83 0.26 -49.99 16 18 Si 1.00 40.80 29.56 68.60 2.03 42.83 16 19 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 C -0.13 -2.90 5.55 30.65 0.17 -2.73 16 23 C 0.11 1.91 6.34 86.34 0.55 2.46 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.52 8.14 -2.38 -0.02 0.51 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 28 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 29 H 0.12 1.49 7.69 -2.39 -0.02 1.47 16 30 H 0.13 1.44 7.94 -2.39 -0.02 1.42 16 31 H 0.08 2.58 7.00 -2.39 -0.02 2.56 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.93 7.58 -2.38 -0.02 1.91 16 36 H 0.39 14.41 8.58 -92.71 -0.80 13.61 16 37 H 0.27 15.12 8.29 -92.70 -0.77 14.35 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.13 1.26 5.93 -2.38 -0.01 1.25 16 Total: -1.00 -81.19 339.37 1.47 -79.72 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.23 Total: 26.98 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 5.36 Total: 21.10 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.44 Total: -101.17 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -1.70 Total: -69.46 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -81.19 1.47 -79.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169852195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.342 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds