Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.46967 * 2 1 4 4 C 1.34641 * 116.99999 * 180.02562 * 3 2 1 5 5 O 1.21504 * 120.00061 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99672 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47005 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00050 * 353.87925 * 8 7 6 10 10 N 1.34783 * 120.00031 * 173.87537 * 8 7 6 11 11 C 1.37091 * 119.99978 * 356.29467 * 10 8 7 12 12 H 1.08003 * 120.00424 * 232.11784 * 11 10 8 13 13 C 1.38957 * 120.00281 * 52.11570 * 11 10 8 14 14 N 1.31415 * 119.99574 * 26.92898 * 13 11 10 15 15 Si 1.86792 * 120.00515 * 206.93078 * 13 11 10 16 16 H 1.48505 * 109.47081 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47482 * 119.99944 * 15 13 11 18 18 H 1.48499 * 109.47173 * 240.00095 * 15 13 11 19 19 C 1.46498 * 120.00117 * 176.01728 * 10 8 7 20 20 C 1.54262 * 110.03345 * 237.91275 * 19 10 8 21 21 C 1.54970 * 104.16020 * 217.13451 * 20 19 10 22 22 C 1.54895 * 102.77523 * 37.88766 * 21 20 19 23 23 C 1.53870 * 110.03404 * 120.69243 * 19 10 8 24 24 H 1.09001 * 109.47073 * 60.00051 * 1 2 3 25 25 H 1.08994 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46732 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47117 * 240.00412 * 2 1 3 28 28 H 1.09000 * 109.47474 * 119.99603 * 2 1 3 29 29 H 0.97002 * 120.00278 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.47168 * 59.99846 * 7 6 4 31 31 H 1.08997 * 109.47533 * 300.00152 * 7 6 4 32 32 H 0.96999 * 119.99777 * 184.88720 * 14 13 11 33 33 H 1.09004 * 110.01607 * 359.29715 * 19 10 8 34 34 H 1.09005 * 110.48832 * 335.78084 * 20 19 10 35 35 H 1.08998 * 110.49251 * 98.42355 * 20 19 10 36 36 H 1.08999 * 110.71898 * 279.57334 * 21 20 19 37 37 H 1.09004 * 110.92353 * 156.29247 * 21 20 19 38 38 H 1.08995 * 110.48518 * 203.40735 * 22 21 20 39 39 H 1.08994 * 110.59824 * 80.81339 * 22 21 20 40 40 H 1.09005 * 110.03066 * 238.57000 * 23 19 10 41 41 H 1.08998 * 110.03092 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5819 -0.0005 6 7 3.8639 2.7909 0.0000 7 6 5.3162 2.9828 -0.0001 8 6 5.6280 4.4572 -0.0001 9 8 4.7317 5.2667 -0.1121 10 7 6.9030 4.8764 0.1244 11 6 7.9073 3.9656 0.3273 12 1 8.5958 4.0949 1.1493 13 6 8.0395 2.8759 -0.5247 14 7 7.6110 2.9554 -1.7645 15 14 8.8264 1.2980 0.0920 16 1 9.2222 1.4651 1.5136 17 1 7.8540 0.1818 -0.0236 18 1 10.0293 0.9931 -0.7236 19 6 7.2162 6.3048 0.0369 20 6 8.2291 6.5551 -1.0993 21 6 9.1480 7.6747 -0.5483 22 6 9.2865 7.2988 0.9479 23 6 7.8878 6.7778 1.3380 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2730 3.5602 0.0011 30 1 5.7437 2.5214 -0.8903 31 1 5.7439 2.5207 0.8896 32 1 7.6381 2.1736 -2.3381 33 1 6.3055 6.8763 -0.1423 34 1 8.8065 5.6528 -1.3013 35 1 7.7162 6.8905 -2.0007 36 1 8.6756 8.6508 -0.6593 37 1 10.1197 7.6591 -1.0421 38 1 9.5451 8.1770 1.5395 39 1 10.0349 6.5174 1.0793 40 1 7.3034 7.5794 1.7898 41 1 7.9803 5.9447 2.0347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172422038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -123.714895 kcal Electronic energy + Delta-G solvation = -23431.045567 eV Core-core repulsion = 19924.869104 eV Total energy + Delta-G solvation = -3506.176463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02194 -39.07481 -37.03614 -36.18020 -34.29805 -33.87288 -31.63898 -31.44439 -27.99110 -27.93650 -26.27131 -24.69725 -23.06828 -21.00463 -20.04659 -19.83126 -19.41043 -18.63767 -16.45221 -16.39023 -16.24219 -15.80177 -15.23542 -14.84931 -14.44364 -14.26738 -14.21819 -13.69155 -13.44241 -13.01574 -12.71604 -12.66387 -12.25622 -12.21949 -11.75647 -11.55390 -11.50097 -11.21054 -11.01791 -10.85814 -10.65113 -10.52392 -10.39647 -10.36213 -10.30162 -10.14979 -10.01593 -9.71779 -8.98932 -8.66901 -8.40518 -7.47063 -6.52472 -4.32660 2.56495 3.14295 3.27323 3.30764 3.31231 3.84216 4.07786 4.52596 4.73127 4.84429 4.98412 5.06124 5.32234 5.33015 5.34542 5.52309 5.60980 5.78769 5.93065 6.03769 6.06887 6.20080 6.26478 6.30019 6.36411 6.40969 6.47551 6.50548 6.61099 6.68836 6.79896 6.85197 6.91971 7.05551 7.25983 7.37039 7.85802 8.01631 8.49924 8.76303 8.84853 9.38932 9.82147 10.47532 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.005102 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.204467 B = 5487.174087 C = 6492.998285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.082 3.918 3 O -0.376 6.376 4 C 0.644 3.356 5 O -0.579 6.579 6 N -0.692 5.692 7 C 0.123 3.877 8 C 0.501 3.499 9 O -0.610 6.610 10 N -0.435 5.435 11 C -0.346 4.346 12 H 0.089 0.911 13 C 0.054 3.946 14 N -0.841 5.841 15 Si 0.892 3.108 16 H -0.264 1.264 17 H -0.268 1.268 18 H -0.280 1.280 19 C 0.132 3.868 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.410 0.590 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.273 0.727 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -0.201 2.949 5.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.290 6.290 4 C 0.396 3.604 5 O -0.469 6.469 6 N -0.353 5.353 7 C -0.001 4.001 8 C 0.291 3.709 9 O -0.497 6.497 10 N -0.153 5.153 11 C -0.474 4.474 12 H 0.106 0.894 13 C -0.154 4.154 14 N -0.476 5.476 15 Si 0.717 3.283 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.206 1.206 19 C 0.028 3.972 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.248 0.752 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.512 -0.378 2.703 5.273 hybrid contribution 0.299 -0.689 0.039 0.752 sum -4.213 -1.068 2.742 5.138 Atomic orbital electron populations 1.21813 0.92950 1.02671 1.03440 1.22852 0.94444 0.79409 1.02616 1.86225 1.22731 1.32545 1.87547 1.18003 0.80726 0.84605 0.77051 1.90981 1.59609 1.39873 1.56406 1.44613 1.08987 1.05253 1.76443 1.21479 0.76388 0.96276 1.05985 1.20047 0.83071 0.89259 0.78539 1.90495 1.46280 1.55920 1.57038 1.43347 1.04590 1.04419 1.62963 1.19254 1.12643 1.03558 1.11922 0.89363 1.25555 0.96021 1.00576 0.93286 1.70128 1.43795 1.29974 1.03693 0.86423 0.79365 0.82781 0.79719 1.18827 1.19251 1.20614 1.21642 0.97444 0.84426 0.93641 1.22602 0.97257 0.99126 0.96938 1.22455 0.99307 0.98346 0.95964 1.22257 0.97598 0.99664 0.95902 1.22396 0.95551 1.00134 0.98443 0.91554 0.90322 0.91575 0.91377 0.91398 0.75238 0.86335 0.89406 0.91653 0.90287 0.88849 0.93024 0.92551 0.92353 0.92933 0.91613 0.92829 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.08 1.10 6.19 37.16 0.23 1.33 16 3 O -0.38 -6.48 10.27 -40.33 -0.41 -6.89 16 4 C 0.64 13.30 8.75 54.06 0.47 13.77 16 5 O -0.58 -13.47 16.13 -19.27 -0.31 -13.78 16 6 N -0.69 -14.63 5.53 -66.47 -0.37 -14.99 16 7 C 0.12 2.88 4.31 -5.20 -0.02 2.85 16 8 C 0.50 12.30 7.34 -10.98 -0.08 12.22 16 9 O -0.61 -15.60 15.04 5.55 0.08 -15.51 16 10 N -0.43 -10.25 2.37 -106.55 -0.25 -10.50 16 11 C -0.35 -8.23 6.80 -14.93 -0.10 -8.33 16 12 H 0.09 2.06 7.29 -52.48 -0.38 1.68 16 13 C 0.05 1.30 3.35 -17.46 -0.06 1.25 16 14 N -0.84 -21.35 11.59 55.50 0.64 -20.71 16 15 Si 0.89 19.32 29.63 -169.99 -5.04 14.28 16 16 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 C 0.13 2.78 3.29 -66.82 -0.22 2.56 16 20 C -0.12 -2.39 6.42 -25.03 -0.16 -2.55 16 21 C -0.12 -1.95 6.91 -24.69 -0.17 -2.12 16 22 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 23 C -0.13 -2.27 6.26 -25.62 -0.16 -2.43 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.41 8.28 7.57 -40.82 -0.31 7.97 16 30 H 0.12 3.02 5.44 -51.93 -0.28 2.74 16 31 H 0.09 2.06 7.77 -51.93 -0.40 1.66 16 32 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 33 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 34 H 0.09 2.11 7.02 -51.93 -0.36 1.74 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -28.34 335.47 -6.91 -35.25 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.25 Total: 12.32 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: -0.06 Total: 15.49 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.02 Total: -46.21 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.64 Total: -36.19 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.04 Total: 14.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.34 -6.91 -35.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172422038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.461 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds