Wall clock time and date at job start Tue Mar 31 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.46967 * 2 1 4 4 C 1.34641 * 116.99999 * 180.02562 * 3 2 1 5 5 O 1.21504 * 120.00061 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99672 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47005 * 179.97438 * 7 6 4 9 9 O 1.21292 * 120.00050 * 353.87925 * 8 7 6 10 10 N 1.34783 * 120.00031 * 173.87537 * 8 7 6 11 11 C 1.37091 * 119.99978 * 356.29467 * 10 8 7 12 12 H 1.08003 * 120.00424 * 232.11784 * 11 10 8 13 13 C 1.38957 * 120.00281 * 52.11570 * 11 10 8 14 14 N 1.31415 * 119.99574 * 26.92898 * 13 11 10 15 15 Si 1.86792 * 120.00515 * 206.93078 * 13 11 10 16 16 H 1.48505 * 109.47081 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47482 * 119.99944 * 15 13 11 18 18 H 1.48499 * 109.47173 * 240.00095 * 15 13 11 19 19 C 1.46498 * 120.00117 * 176.01728 * 10 8 7 20 20 C 1.54262 * 110.03345 * 237.91275 * 19 10 8 21 21 C 1.54970 * 104.16020 * 217.13451 * 20 19 10 22 22 C 1.54895 * 102.77523 * 37.88766 * 21 20 19 23 23 C 1.53870 * 110.03404 * 120.69243 * 19 10 8 24 24 H 1.09001 * 109.47073 * 60.00051 * 1 2 3 25 25 H 1.08994 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46732 * 299.99965 * 1 2 3 27 27 H 1.09000 * 109.47117 * 240.00412 * 2 1 3 28 28 H 1.09000 * 109.47474 * 119.99603 * 2 1 3 29 29 H 0.97002 * 120.00278 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.47168 * 59.99846 * 7 6 4 31 31 H 1.08997 * 109.47533 * 300.00152 * 7 6 4 32 32 H 0.96999 * 119.99777 * 184.88720 * 14 13 11 33 33 H 1.09004 * 110.01607 * 359.29715 * 19 10 8 34 34 H 1.09005 * 110.48832 * 335.78084 * 20 19 10 35 35 H 1.08998 * 110.49251 * 98.42355 * 20 19 10 36 36 H 1.08999 * 110.71898 * 279.57334 * 21 20 19 37 37 H 1.09004 * 110.92353 * 156.29247 * 21 20 19 38 38 H 1.08995 * 110.48518 * 203.40735 * 22 21 20 39 39 H 1.08994 * 110.59824 * 80.81339 * 22 21 20 40 40 H 1.09005 * 110.03066 * 238.57000 * 23 19 10 41 41 H 1.08998 * 110.03092 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5819 -0.0005 6 7 3.8639 2.7909 0.0000 7 6 5.3162 2.9828 -0.0001 8 6 5.6280 4.4572 -0.0001 9 8 4.7317 5.2667 -0.1121 10 7 6.9030 4.8764 0.1244 11 6 7.9073 3.9656 0.3273 12 1 8.5958 4.0949 1.1493 13 6 8.0395 2.8759 -0.5247 14 7 7.6110 2.9554 -1.7645 15 14 8.8264 1.2980 0.0920 16 1 9.2222 1.4651 1.5136 17 1 7.8540 0.1818 -0.0236 18 1 10.0293 0.9931 -0.7236 19 6 7.2162 6.3048 0.0369 20 6 8.2291 6.5551 -1.0993 21 6 9.1480 7.6747 -0.5483 22 6 9.2865 7.2988 0.9479 23 6 7.8878 6.7778 1.3380 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2730 3.5602 0.0011 30 1 5.7437 2.5214 -0.8903 31 1 5.7439 2.5207 0.8896 32 1 7.6381 2.1736 -2.3381 33 1 6.3055 6.8763 -0.1423 34 1 8.8065 5.6528 -1.3013 35 1 7.7162 6.8905 -2.0007 36 1 8.6756 8.6508 -0.6593 37 1 10.1197 7.6591 -1.0421 38 1 9.5451 8.1770 1.5395 39 1 10.0349 6.5174 1.0793 40 1 7.3034 7.5794 1.7898 41 1 7.9803 5.9447 2.0347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172422038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:06 Heat of formation + Delta-G solvation = -141.609439 kcal Electronic energy + Delta-G solvation = -23431.821532 eV Core-core repulsion = 19924.869104 eV Total energy + Delta-G solvation = -3506.952429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65296 -40.83193 -38.62356 -37.73951 -36.12284 -35.62133 -33.40607 -32.54925 -29.60117 -29.44406 -27.98038 -26.50379 -24.18790 -22.54116 -21.65638 -21.39787 -21.12108 -20.25024 -18.22438 -17.91958 -17.85184 -17.46094 -17.04500 -16.49912 -16.10769 -15.84024 -15.77557 -15.19751 -14.89709 -14.58831 -14.16642 -14.08320 -13.84395 -13.56245 -13.44974 -13.11581 -12.88700 -12.62377 -12.58707 -12.52786 -12.29146 -12.07728 -11.86157 -11.85314 -11.79890 -11.55932 -11.37475 -11.33227 -10.85316 -10.53215 -10.23860 -9.33895 -8.41105 -6.24459 1.05196 1.38047 1.51014 1.56607 1.64294 1.92241 2.27418 2.84469 2.87184 3.27380 3.87510 3.91931 4.01612 4.09878 4.13418 4.28075 4.34611 4.47541 4.63112 4.68753 4.73505 4.80325 4.83558 4.84764 4.92566 4.94523 5.05290 5.10267 5.15670 5.18366 5.27108 5.39983 5.41048 5.51163 5.53213 5.66391 6.03352 6.33498 6.59793 6.88038 7.19972 7.48931 7.92970 8.58924 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.005102 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.204467 B = 5487.174087 C = 6492.998285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 O -0.371 6.371 4 C 0.648 3.352 5 O -0.608 6.608 6 N -0.691 5.691 7 C 0.136 3.864 8 C 0.488 3.512 9 O -0.628 6.628 10 N -0.437 5.437 11 C -0.348 4.348 12 H 0.095 0.905 13 C 0.027 3.973 14 N -0.868 5.868 15 Si 0.944 3.056 16 H -0.251 1.251 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.121 3.879 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.415 0.585 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.272 0.728 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 0.263 3.921 5.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.006 4.006 3 O -0.285 6.285 4 C 0.401 3.599 5 O -0.500 6.500 6 N -0.352 5.352 7 C 0.011 3.989 8 C 0.277 3.723 9 O -0.517 6.517 10 N -0.154 5.154 11 C -0.475 4.475 12 H 0.113 0.887 13 C -0.179 4.179 14 N -0.504 5.504 15 Si 0.767 3.233 16 H -0.174 1.174 17 H -0.213 1.213 18 H -0.201 1.201 19 C 0.017 3.983 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.160 4.160 24 H 0.087 0.913 25 H 0.127 0.873 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.253 0.747 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.267 0.103 3.688 5.641 hybrid contribution 0.142 -0.848 -0.291 0.907 sum -4.125 -0.745 3.397 5.396 Atomic orbital electron populations 1.21846 0.89518 1.04740 1.03793 1.23335 0.97019 0.77501 1.02704 1.86264 1.20286 1.35080 1.86874 1.18037 0.81722 0.83866 0.76281 1.90954 1.60713 1.40652 1.57662 1.44497 1.08257 1.05857 1.76617 1.21160 0.77645 0.95461 1.04677 1.20290 0.83416 0.89587 0.79000 1.90464 1.46710 1.56352 1.58165 1.43542 1.04306 1.05639 1.61959 1.19428 1.12382 1.03784 1.11905 0.88717 1.26078 0.96339 1.02345 0.93142 1.70187 1.45146 1.30381 1.04646 0.85628 0.78202 0.79363 0.80062 1.17384 1.21262 1.20119 1.21901 0.97420 0.82812 0.96126 1.22509 0.97301 0.99475 0.96393 1.22424 0.99177 0.97465 0.95880 1.22237 0.95686 1.00744 0.95996 1.22350 0.97113 1.00216 0.96307 0.91318 0.87316 0.91079 0.91572 0.91189 0.74702 0.88347 0.89886 0.91841 0.91947 0.91862 0.94018 0.90581 0.90747 0.89652 0.92095 0.91142 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 10.29 71.98 0.74 -1.64 16 2 C 0.07 1.77 6.19 71.98 0.45 2.21 16 3 O -0.37 -12.62 10.27 -55.50 -0.57 -13.19 16 4 C 0.65 26.98 8.75 129.79 1.14 28.12 16 5 O -0.61 -28.66 16.13 19.83 0.32 -28.34 16 6 N -0.69 -29.74 5.53 -594.62 -3.29 -33.03 16 7 C 0.14 6.51 4.31 85.63 0.37 6.88 16 8 C 0.49 24.44 7.34 87.66 0.64 25.09 16 9 O -0.63 -32.75 15.04 -3.07 -0.05 -32.80 16 10 N -0.44 -20.87 2.37 -609.38 -1.44 -22.32 16 11 C -0.35 -16.58 6.80 84.04 0.57 -16.01 16 12 H 0.10 4.36 7.29 -2.91 -0.02 4.34 16 13 C 0.03 1.32 3.35 84.93 0.28 1.60 16 14 N -0.87 -45.04 11.59 21.67 0.25 -44.79 16 15 Si 0.94 39.84 29.63 68.60 2.03 41.88 16 16 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 19 C 0.12 5.07 3.29 45.71 0.15 5.22 16 20 C -0.12 -4.65 6.42 31.70 0.20 -4.45 16 21 C -0.11 -3.25 6.91 31.92 0.22 -3.03 16 22 C -0.11 -3.08 6.83 31.67 0.22 -2.87 16 23 C -0.12 -4.16 6.26 31.32 0.20 -3.96 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.41 17.01 7.57 -92.71 -0.70 16.31 16 30 H 0.10 5.19 5.44 -2.39 -0.01 5.17 16 31 H 0.08 4.00 7.77 -2.39 -0.02 3.98 16 32 H 0.27 13.67 8.32 -92.71 -0.77 12.90 16 33 H 0.06 2.81 6.95 -2.38 -0.02 2.79 16 34 H 0.06 2.88 7.02 -2.38 -0.02 2.86 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.06 2.19 6.95 -2.39 -0.02 2.17 16 Total: -1.00 -61.64 335.47 2.77 -58.87 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.33 Total: 36.56 kcal Atomic # 6 Polarization: 31.98 SS G_CDS: 5.18 Total: 37.15 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -4.48 Total: -100.13 kcal Atomic # 8 Polarization: -74.03 SS G_CDS: -0.30 Total: -74.33 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.88 kcal Total: -61.64 2.77 -58.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172422038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.738 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds