Wall clock time and date at job start Tue Mar 31 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30305 * 126.34142 * 239.69217 * 5 2 1 7 7 N 1.28524 * 110.07661 * 179.82361 * 6 5 2 8 8 C 1.31280 * 109.85795 * 0.44583 * 7 6 5 9 9 S 1.76204 * 126.48437 * 179.75210 * 8 7 6 10 10 C 1.80996 * 100.00136 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.47321 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46957 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46830 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00342 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00089 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00000 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47297 * 60.00171 * 17 15 13 19 19 H 1.48499 * 109.47234 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47084 * 300.00247 * 17 15 13 21 21 N 1.36539 * 107.03370 * 359.73718 * 8 7 6 22 22 N 1.36593 * 127.14459 * 180.02562 * 21 8 7 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09006 * 109.47338 * 300.00140 * 10 9 8 33 33 H 1.09004 * 109.46907 * 59.99713 * 10 9 8 34 34 H 1.08992 * 109.46909 * 300.00255 * 11 10 9 35 35 H 1.08999 * 109.47081 * 60.00344 * 11 10 9 36 36 H 1.09000 * 109.47403 * 299.99621 * 12 11 10 37 37 H 1.09000 * 109.47395 * 60.00499 * 12 11 10 38 38 H 0.97001 * 120.00390 * 179.97438 * 16 15 13 39 39 H 1.00899 * 110.99840 * 269.99454 * 22 21 8 40 40 H 1.00902 * 111.00526 * 33.94568 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7891 -1.7709 -1.2550 7 7 3.0260 -2.1158 -2.4702 8 6 2.4358 -1.2811 -3.2938 9 16 2.4775 -1.3410 -5.0544 10 6 3.5136 -2.8056 -5.2946 11 6 3.6941 -3.0626 -6.7920 12 6 4.5704 -4.3002 -6.9949 13 6 4.7476 -4.5538 -8.4699 14 1 4.2822 -3.8975 -9.1904 15 6 5.5049 -5.6229 -8.8995 16 7 6.0721 -6.4217 -8.0222 17 14 5.7252 -5.9368 -10.7277 18 1 6.3766 -4.7600 -11.3570 19 1 6.5757 -7.1381 -10.9248 20 1 4.3981 -6.1621 -11.3547 21 7 1.7832 -0.3580 -2.5282 22 7 1.0360 0.6978 -2.9672 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 4.4877 -2.6412 -4.8338 33 1 3.0345 -3.6692 -4.8332 34 1 2.7199 -3.2272 -7.2523 35 1 4.1730 -2.1992 -7.2537 36 1 5.5446 -4.1352 -6.5347 37 1 4.0919 -5.1639 -6.5332 38 1 6.6045 -7.1741 -8.3244 39 1 1.6072 1.5213 -3.0837 40 1 0.5535 0.4684 -3.8232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182799694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:08 Heat of formation + Delta-G solvation = 69.463079 kcal Electronic energy + Delta-G solvation = -19755.336432 eV Core-core repulsion = 16732.582417 eV Total energy + Delta-G solvation = -3022.754015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.09826 -37.25097 -36.51953 -34.55900 -32.10252 -30.29281 -29.79610 -27.62325 -27.55326 -27.50475 -23.83755 -22.94659 -22.76893 -20.41240 -19.96846 -18.35874 -17.63889 -16.74752 -16.24444 -15.62235 -15.39689 -14.68657 -14.67940 -14.28118 -14.10138 -13.95433 -12.63375 -12.62609 -12.57741 -12.26538 -11.95181 -11.92068 -11.91004 -11.78011 -11.42317 -11.33859 -11.29185 -11.09774 -10.90074 -10.71025 -10.57407 -10.27475 -10.05519 -9.85646 -9.69482 -9.42388 -9.16770 -8.38558 -7.66750 -6.02940 -4.06597 1.01679 1.48909 2.04933 2.23047 2.70153 3.31897 3.36634 3.38649 3.72460 4.34396 4.43306 4.48381 4.63017 4.89346 5.14616 5.25411 5.29624 5.32546 5.44561 5.44635 5.48808 5.52870 5.59199 5.60937 5.63545 5.79531 5.90846 5.99611 6.05917 6.12300 6.15609 6.40977 6.58581 6.90754 7.18062 7.60698 7.71714 7.94831 8.34653 8.54310 8.99371 9.57611 11.08190 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.002821 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.368701 B = 9923.434443 C =10353.954954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.142 4.142 4 C -0.133 4.133 5 C 0.219 3.781 6 N -0.279 5.279 7 N -0.277 5.277 8 C 0.130 3.870 9 S -0.039 6.039 10 C -0.080 4.080 11 C -0.097 4.097 12 C 0.030 3.970 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.309 5.309 22 N -0.581 5.581 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.362 0.638 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 17.995 15.316 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 C -0.200 4.200 4 C -0.191 4.191 5 C -0.051 4.051 6 N -0.119 5.119 7 N -0.121 5.121 8 C -0.245 4.245 9 S 0.190 5.810 10 C -0.228 4.228 11 C -0.137 4.137 12 C -0.009 4.009 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 N -0.092 5.092 22 N -0.212 5.212 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.180 0.820 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.885 17.315 15.697 26.219 hybrid contribution 0.496 0.112 -1.571 1.651 sum -11.389 17.426 14.126 25.158 Atomic orbital electron populations 1.21916 0.92537 1.02568 1.03035 1.18986 0.96158 0.94215 0.88060 1.21922 1.01335 0.94035 1.02753 1.21761 1.02079 1.00671 0.94586 1.24893 0.99790 0.96067 0.84353 1.74103 1.14507 1.10372 1.12877 1.74797 1.20356 1.21649 0.95327 1.27529 1.00769 0.94628 1.01587 1.85383 1.67268 1.41816 0.86525 1.23915 1.00719 0.94402 1.03786 1.21571 1.01722 1.01807 0.88644 1.19084 0.94204 0.90569 0.97076 1.21145 1.31490 1.11796 0.91858 0.92603 1.25020 0.95591 0.96014 0.97730 1.69950 1.33242 1.16358 1.33627 0.86628 0.78144 0.77654 0.85405 1.20209 1.21235 1.20199 1.45138 1.38064 1.20063 1.05892 1.59839 1.23640 0.96784 1.40977 0.90934 0.91570 0.92500 0.91152 0.92399 0.92006 0.91606 0.91677 0.91747 0.88731 0.88686 0.92164 0.92218 0.96091 0.96071 0.92798 0.82010 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.43 37.16 0.31 -0.81 16 2 C 0.03 0.26 0.91 -155.66 -0.14 0.12 16 3 C -0.14 -1.02 8.43 37.15 0.31 -0.71 16 4 C -0.13 -1.17 7.98 37.16 0.30 -0.87 16 5 C 0.22 2.84 6.37 -153.99 -0.98 1.86 16 6 N -0.28 -4.62 11.50 33.00 0.38 -4.24 16 7 N -0.28 -4.99 11.60 30.68 0.36 -4.64 16 8 C 0.13 1.99 8.13 -88.34 -0.72 1.27 16 9 S -0.04 -0.56 21.97 -107.50 -2.36 -2.92 16 10 C -0.08 -1.40 5.23 37.16 0.19 -1.21 16 11 C -0.10 -1.94 5.16 -26.73 -0.14 -2.08 16 12 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 N -0.31 -3.74 3.81 -9.93 -0.04 -3.78 16 22 N -0.58 -4.55 8.49 60.35 0.51 -4.03 16 23 H 0.07 0.57 7.13 -51.93 -0.37 0.20 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.41 6.84 -51.93 -0.36 0.05 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 33 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.36 2.10 8.81 -181.37 -1.60 0.50 16 40 H 0.38 2.59 8.80 -181.37 -1.60 0.99 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -32.49 345.17 -10.60 -43.10 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.96 Total: -3.89 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.41 Total: -15.21 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 1.95 Total: -42.78 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.36 Total: -2.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.49 -10.60 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182799694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.561 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds