Wall clock time and date at job start Tue Mar 31 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30305 * 126.34142 * 239.69217 * 5 2 1 7 7 N 1.28524 * 110.07661 * 179.82361 * 6 5 2 8 8 C 1.31280 * 109.85795 * 0.44583 * 7 6 5 9 9 S 1.76204 * 126.48437 * 179.75210 * 8 7 6 10 10 C 1.80996 * 100.00136 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.47321 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46957 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46830 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00342 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00089 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00000 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47297 * 60.00171 * 17 15 13 19 19 H 1.48499 * 109.47234 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47084 * 300.00247 * 17 15 13 21 21 N 1.36539 * 107.03370 * 359.73718 * 8 7 6 22 22 N 1.36593 * 127.14459 * 180.02562 * 21 8 7 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09006 * 109.47338 * 300.00140 * 10 9 8 33 33 H 1.09004 * 109.46907 * 59.99713 * 10 9 8 34 34 H 1.08992 * 109.46909 * 300.00255 * 11 10 9 35 35 H 1.08999 * 109.47081 * 60.00344 * 11 10 9 36 36 H 1.09000 * 109.47403 * 299.99621 * 12 11 10 37 37 H 1.09000 * 109.47395 * 60.00499 * 12 11 10 38 38 H 0.97001 * 120.00390 * 179.97438 * 16 15 13 39 39 H 1.00899 * 110.99840 * 269.99454 * 22 21 8 40 40 H 1.00902 * 111.00526 * 33.94568 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7891 -1.7709 -1.2550 7 7 3.0260 -2.1158 -2.4702 8 6 2.4358 -1.2811 -3.2938 9 16 2.4775 -1.3410 -5.0544 10 6 3.5136 -2.8056 -5.2946 11 6 3.6941 -3.0626 -6.7920 12 6 4.5704 -4.3002 -6.9949 13 6 4.7476 -4.5538 -8.4699 14 1 4.2822 -3.8975 -9.1904 15 6 5.5049 -5.6229 -8.8995 16 7 6.0721 -6.4217 -8.0222 17 14 5.7252 -5.9368 -10.7277 18 1 6.3766 -4.7600 -11.3570 19 1 6.5757 -7.1381 -10.9248 20 1 4.3981 -6.1621 -11.3547 21 7 1.7832 -0.3580 -2.5282 22 7 1.0360 0.6978 -2.9672 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 4.4877 -2.6412 -4.8338 33 1 3.0345 -3.6692 -4.8332 34 1 2.7199 -3.2272 -7.2523 35 1 4.1730 -2.1992 -7.2537 36 1 5.5446 -4.1352 -6.5347 37 1 4.0919 -5.1639 -6.5332 38 1 6.6045 -7.1741 -8.3244 39 1 1.6072 1.5213 -3.0837 40 1 0.5535 0.4684 -3.8232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182799694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:08 Heat of formation + Delta-G solvation = 50.214592 kcal Electronic energy + Delta-G solvation = -19756.171109 eV Core-core repulsion = 16732.582417 eV Total energy + Delta-G solvation = -3023.588692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.17081 -38.05109 -37.38263 -36.42716 -34.11455 -31.40853 -30.69984 -29.46527 -28.22726 -28.17141 -25.55851 -24.21630 -23.82408 -22.14924 -20.83672 -19.35503 -18.53140 -18.48460 -17.70405 -16.63936 -16.48301 -16.37557 -16.14891 -15.51036 -14.87942 -14.80627 -14.50876 -13.77606 -13.74841 -13.40160 -13.16769 -13.10544 -12.97216 -12.74448 -12.63979 -12.57974 -12.47229 -12.23805 -12.12490 -12.05755 -11.82425 -11.73175 -11.51484 -11.34361 -11.20014 -11.07400 -10.59596 -10.56593 -8.83215 -8.20731 -6.32900 -0.16336 0.43225 0.86565 1.12788 1.41068 1.44229 1.52194 1.56857 2.41094 2.92094 3.12854 3.53135 3.73714 3.91545 3.94714 3.96298 4.17881 4.23966 4.32457 4.47296 4.73404 4.74765 4.77576 4.81837 4.87647 4.92936 4.98795 4.98859 5.08728 5.09529 5.27282 5.37111 5.45525 5.47080 5.51766 5.64043 5.80834 6.18991 6.32052 6.83554 7.36730 7.41983 8.91139 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.002821 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.368701 B = 9923.434443 C =10353.954954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 C -0.138 4.138 4 C -0.132 4.132 5 C 0.231 3.769 6 N -0.321 5.321 7 N -0.323 5.323 8 C 0.113 3.887 9 S 0.026 5.974 10 C -0.085 4.085 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.544 4.544 14 H 0.067 0.933 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.265 1.265 21 N -0.302 5.302 22 N -0.568 5.568 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.040 0.960 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.378 0.622 40 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.687 20.724 14.897 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 C -0.196 4.196 4 C -0.190 4.190 5 C -0.040 4.040 6 N -0.161 5.161 7 N -0.167 5.167 8 C -0.264 4.264 9 S 0.254 5.746 10 C -0.235 4.235 11 C -0.121 4.121 12 C -0.009 4.009 13 C -0.582 4.582 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.190 1.190 21 N -0.083 5.083 22 N -0.202 5.202 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.059 0.941 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.198 0.802 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.659 20.072 15.273 28.683 hybrid contribution 0.975 -0.647 -1.328 1.770 sum -12.684 19.424 13.946 27.068 Atomic orbital electron populations 1.21899 0.91100 1.01995 1.04525 1.19299 0.97150 0.95049 0.86176 1.21922 1.00633 0.92550 1.04509 1.21770 1.01167 1.00177 0.95838 1.25689 0.97841 0.94852 0.85604 1.74005 1.16786 1.12593 1.12693 1.74688 1.22132 1.23560 0.96361 1.27702 1.01244 0.95455 1.02027 1.84888 1.65622 1.38454 0.85593 1.23572 1.01291 0.96617 1.01976 1.21244 1.00951 0.99461 0.90409 1.18962 0.93776 0.92302 0.95849 1.21635 1.31369 1.12033 0.93153 0.91528 1.26022 0.95199 0.95769 1.02976 1.70103 1.34174 1.17045 1.36142 0.85463 0.78528 0.77742 0.79103 1.18957 1.21075 1.18977 1.45178 1.37467 1.20394 1.05277 1.59965 1.22820 0.95827 1.41559 0.90682 0.88835 0.94098 0.88535 0.93541 0.91147 0.93329 0.93142 0.88687 0.89970 0.90009 0.91199 0.91209 0.98769 0.98787 0.92733 0.80222 0.79668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.43 71.98 0.61 -1.19 16 2 C 0.03 0.43 0.91 -52.93 -0.05 0.38 16 3 C -0.14 -1.59 8.43 71.98 0.61 -0.98 16 4 C -0.13 -2.18 7.98 71.98 0.57 -1.60 16 5 C 0.23 5.86 6.37 137.63 0.88 6.74 16 6 N -0.32 -10.98 11.50 -49.52 -0.57 -11.55 16 7 N -0.32 -12.03 11.60 -56.85 -0.66 -12.69 16 8 C 0.11 3.39 8.13 179.55 1.46 4.85 16 9 S 0.03 0.70 21.97 -56.49 -1.24 -0.54 16 10 C -0.09 -3.07 5.23 71.98 0.38 -2.69 16 11 C -0.08 -3.25 5.16 30.59 0.16 -3.09 16 12 C 0.03 1.60 4.97 29.85 0.15 1.75 16 13 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 16 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 17 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 N -0.30 -6.94 3.81 -185.32 -0.71 -7.64 16 22 N -0.57 -7.36 8.49 37.02 0.31 -7.05 16 23 H 0.07 0.95 7.13 -2.39 -0.02 0.94 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.69 6.84 -2.39 -0.02 0.67 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.38 3.17 8.81 -210.56 -1.86 1.32 16 40 H 0.38 4.15 8.80 -210.56 -1.85 2.29 16 Total: -1.00 -73.14 345.17 2.24 -70.90 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.67 Total: 5.77 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 5.45 Total: -25.97 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -1.34 Total: -96.30 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.24 Total: -0.54 kcal Total: -73.14 2.24 -70.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182799694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.113 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds