Wall clock time and date at job start Tue Mar 31 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 C 1.53001 * 109.47535 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47203 * 180.02562 * 4 3 2 6 6 N 1.30295 * 126.34166 * 89.97704 * 5 4 3 7 7 N 1.28528 * 110.07800 * 179.97438 * 6 5 4 8 8 C 1.31285 * 109.85627 * 359.97438 * 7 6 5 9 9 S 1.76198 * 126.48326 * 180.02562 * 8 7 6 10 10 C 1.81002 * 99.99878 * 0.02610 * 9 8 7 11 11 C 1.53006 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99654 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46769 * 209.99494 * 17 15 13 20 20 H 1.48495 * 109.47280 * 329.99669 * 17 15 13 21 21 N 1.36537 * 107.03216 * 0.26661 * 8 7 6 22 22 N 1.36593 * 127.14267 * 179.73940 * 21 8 7 23 23 H 1.08994 * 109.47419 * 59.99792 * 1 2 3 24 24 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46826 * 299.99415 * 1 2 3 26 26 H 1.09005 * 109.46920 * 239.99946 * 2 1 3 27 27 H 1.08994 * 109.47419 * 120.00208 * 2 1 3 28 28 H 1.09000 * 109.47094 * 59.99652 * 3 2 1 29 29 H 1.09008 * 109.47119 * 300.00321 * 3 2 1 30 30 H 1.08997 * 109.46919 * 59.99738 * 4 3 2 31 31 H 1.09000 * 109.46607 * 300.00348 * 4 3 2 32 32 H 1.09001 * 109.47446 * 60.00463 * 10 9 8 33 33 H 1.09001 * 109.47383 * 300.00236 * 10 9 8 34 34 H 1.09001 * 109.47002 * 299.99666 * 11 10 9 35 35 H 1.08993 * 109.46955 * 60.00103 * 11 10 9 36 36 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 37 37 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 38 38 H 0.96999 * 119.99682 * 180.02562 * 16 15 13 39 39 H 1.00903 * 110.99956 * 90.02184 * 22 21 8 40 40 H 1.00898 * 111.00537 * 213.97782 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3297 3.5908 1.0498 7 7 4.7415 4.7541 0.6904 8 6 4.7697 4.8319 -0.6198 9 16 5.2644 6.2268 -1.5760 10 6 5.6757 7.3873 -0.2494 11 6 6.1445 8.7111 -0.8569 12 6 6.4928 9.6919 0.2645 13 6 6.9550 10.9954 -0.3339 14 1 6.9959 11.1128 -1.4067 15 6 7.3249 12.0387 0.4883 16 7 7.7278 13.1765 -0.0339 17 14 7.2536 11.8359 2.3439 18 1 8.5544 11.3147 2.8352 19 1 6.9772 13.1513 2.9753 20 1 6.1726 10.8808 2.6963 21 7 4.3381 3.6294 -1.1013 22 7 4.2026 3.2660 -2.4110 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8908 31 1 3.9337 0.9285 0.8891 32 1 6.4713 6.9680 0.3666 33 1 4.7936 7.5628 0.3665 34 1 7.0265 8.5360 -1.4729 35 1 5.3487 9.1302 -1.4725 36 1 5.6111 9.8670 0.8809 37 1 7.2888 9.2724 0.8799 38 1 7.9883 13.9103 0.5445 39 1 5.0538 2.8526 -2.7615 40 1 3.4199 2.6412 -2.5339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182890775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:11 Heat of formation + Delta-G solvation = 65.539032 kcal Electronic energy + Delta-G solvation = -19195.266399 eV Core-core repulsion = 16172.342224 eV Total energy + Delta-G solvation = -3022.924175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.13573 -36.93310 -36.28267 -34.61487 -32.44908 -32.07471 -30.06890 -29.21384 -27.99758 -25.01660 -23.38998 -22.74122 -21.81295 -21.39823 -20.22999 -18.57815 -17.68028 -17.08453 -16.57923 -15.91064 -15.54878 -15.06523 -14.73034 -14.47928 -14.28729 -13.90575 -13.69321 -12.91455 -12.61178 -12.23522 -12.16450 -12.11475 -11.98999 -11.89035 -11.65399 -11.35769 -11.33356 -11.13746 -10.87759 -10.81987 -10.35052 -10.06411 -9.94574 -9.78365 -9.73852 -9.61433 -9.19949 -8.52186 -7.56837 -6.02904 -4.01513 1.08578 1.39219 1.98848 2.35151 2.59099 3.34615 3.42036 3.46999 3.62605 4.09453 4.33606 4.40437 4.47777 4.56376 4.75119 4.97598 5.05185 5.06147 5.22922 5.30681 5.31299 5.42057 5.43190 5.45660 5.47685 5.61810 5.67212 5.73772 5.82082 6.03026 6.06442 6.36643 6.48380 6.79825 7.10580 7.25880 7.38590 7.78288 8.44192 8.53591 9.01273 9.59134 11.10242 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.002706 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.794488 B =10343.102398 C =10809.129455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.030 4.030 5 C 0.142 3.858 6 N -0.269 5.269 7 N -0.290 5.290 8 C 0.194 3.806 9 S 0.011 5.989 10 C -0.104 4.104 11 C -0.089 4.089 12 C -0.006 4.006 13 C -0.521 4.521 14 H 0.073 0.927 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 N -0.312 5.312 22 N -0.583 5.583 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.263 0.737 39 H 0.365 0.635 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 -29.150 -4.195 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.070 4.070 5 C -0.129 4.129 6 N -0.109 5.109 7 N -0.135 5.135 8 C -0.180 4.180 9 S 0.242 5.758 10 C -0.252 4.252 11 C -0.129 4.129 12 C -0.046 4.046 13 C -0.560 4.560 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.188 1.188 21 N -0.096 5.096 22 N -0.214 5.214 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.183 0.817 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.174 -27.675 -4.035 30.118 hybrid contribution -0.028 -1.607 1.102 1.949 sum -11.202 -29.283 -2.933 31.489 Atomic orbital electron populations 1.21770 0.95435 1.01808 1.02138 1.21515 0.96342 0.95843 1.02323 1.21658 0.92893 0.97752 1.03318 1.20061 0.96387 0.85992 1.04552 1.25428 1.06395 0.97799 0.83317 1.73965 1.14628 0.98961 1.23351 1.74909 1.20207 1.12449 1.05921 1.27014 1.04271 0.91823 0.94927 1.85832 1.79876 1.00483 1.09643 1.23974 1.05680 0.97387 0.98207 1.21338 1.00950 0.90588 0.99993 1.19561 0.96560 0.94450 0.94000 1.21092 1.44066 0.95492 0.95305 0.90886 1.25019 0.94557 0.95077 0.98795 1.69912 1.45040 1.03714 1.35472 0.86788 0.79114 0.77553 0.85953 1.20242 1.21379 1.18813 1.45047 1.51804 1.10698 1.02029 1.59577 1.11530 1.52856 0.97408 0.92676 0.92547 0.92483 0.91916 0.91479 0.90603 0.91961 0.90572 0.87770 0.88942 0.88883 0.91624 0.91546 0.96163 0.96618 0.92713 0.81698 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.54 5.93 -26.73 -0.16 -0.70 16 3 C -0.12 -0.71 5.20 -26.73 -0.14 -0.85 16 4 C -0.03 -0.20 5.52 -27.88 -0.15 -0.35 16 5 C 0.14 1.64 7.38 -154.00 -1.14 0.50 16 6 N -0.27 -4.23 12.17 32.99 0.40 -3.83 16 7 N -0.29 -5.04 11.60 30.68 0.36 -4.69 16 8 C 0.19 2.95 8.20 -88.34 -0.72 2.22 16 9 S 0.01 0.17 22.27 -107.50 -2.39 -2.22 16 10 C -0.10 -1.76 5.23 37.16 0.19 -1.57 16 11 C -0.09 -1.74 5.16 -26.73 -0.14 -1.88 16 12 C -0.01 -0.15 4.04 -27.89 -0.11 -0.26 16 13 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 17 Si 0.88 21.99 27.47 -169.99 -4.67 17.33 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 21 N -0.31 -3.63 3.81 -9.93 -0.04 -3.67 16 22 N -0.58 -4.35 10.41 60.35 0.63 -3.73 16 23 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.36 1.93 9.21 -181.37 -1.67 0.26 16 40 H 0.37 1.69 8.85 -181.37 -1.61 0.08 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -34.24 349.11 -11.23 -45.48 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -9.12 Total: -6.15 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.43 Total: -16.58 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 2.12 Total: -43.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.39 Total: -2.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.24 -11.23 -45.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182890775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.017 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds