Wall clock time and date at job start Tue Mar 31 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 C 1.53001 * 109.47535 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47203 * 180.02562 * 4 3 2 6 6 N 1.30295 * 126.34166 * 89.97704 * 5 4 3 7 7 N 1.28528 * 110.07800 * 179.97438 * 6 5 4 8 8 C 1.31285 * 109.85627 * 359.97438 * 7 6 5 9 9 S 1.76198 * 126.48326 * 180.02562 * 8 7 6 10 10 C 1.81002 * 99.99878 * 0.02610 * 9 8 7 11 11 C 1.53006 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99654 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46769 * 209.99494 * 17 15 13 20 20 H 1.48495 * 109.47280 * 329.99669 * 17 15 13 21 21 N 1.36537 * 107.03216 * 0.26661 * 8 7 6 22 22 N 1.36593 * 127.14267 * 179.73940 * 21 8 7 23 23 H 1.08994 * 109.47419 * 59.99792 * 1 2 3 24 24 H 1.09003 * 109.46933 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46826 * 299.99415 * 1 2 3 26 26 H 1.09005 * 109.46920 * 239.99946 * 2 1 3 27 27 H 1.08994 * 109.47419 * 120.00208 * 2 1 3 28 28 H 1.09000 * 109.47094 * 59.99652 * 3 2 1 29 29 H 1.09008 * 109.47119 * 300.00321 * 3 2 1 30 30 H 1.08997 * 109.46919 * 59.99738 * 4 3 2 31 31 H 1.09000 * 109.46607 * 300.00348 * 4 3 2 32 32 H 1.09001 * 109.47446 * 60.00463 * 10 9 8 33 33 H 1.09001 * 109.47383 * 300.00236 * 10 9 8 34 34 H 1.09001 * 109.47002 * 299.99666 * 11 10 9 35 35 H 1.08993 * 109.46955 * 60.00103 * 11 10 9 36 36 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 37 37 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 38 38 H 0.96999 * 119.99682 * 180.02562 * 16 15 13 39 39 H 1.00903 * 110.99956 * 90.02184 * 22 21 8 40 40 H 1.00898 * 111.00537 * 213.97782 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 7 4.3297 3.5908 1.0498 7 7 4.7415 4.7541 0.6904 8 6 4.7697 4.8319 -0.6198 9 16 5.2644 6.2268 -1.5760 10 6 5.6757 7.3873 -0.2494 11 6 6.1445 8.7111 -0.8569 12 6 6.4928 9.6919 0.2645 13 6 6.9550 10.9954 -0.3339 14 1 6.9959 11.1128 -1.4067 15 6 7.3249 12.0387 0.4883 16 7 7.7278 13.1765 -0.0339 17 14 7.2536 11.8359 2.3439 18 1 8.5544 11.3147 2.8352 19 1 6.9772 13.1513 2.9753 20 1 6.1726 10.8808 2.6963 21 7 4.3381 3.6294 -1.1013 22 7 4.2026 3.2660 -2.4110 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8908 31 1 3.9337 0.9285 0.8891 32 1 6.4713 6.9680 0.3666 33 1 4.7936 7.5628 0.3665 34 1 7.0265 8.5360 -1.4729 35 1 5.3487 9.1302 -1.4725 36 1 5.6111 9.8670 0.8809 37 1 7.2888 9.2724 0.8799 38 1 7.9883 13.9103 0.5445 39 1 5.0538 2.8526 -2.7615 40 1 3.4199 2.6412 -2.5339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182890775.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:11 Heat of formation + Delta-G solvation = 44.681790 kcal Electronic energy + Delta-G solvation = -19196.170837 eV Core-core repulsion = 16172.342224 eV Total energy + Delta-G solvation = -3023.828613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.13419 -37.72664 -36.82588 -36.41856 -34.17491 -33.12839 -30.92215 -30.19640 -29.65894 -25.73524 -24.98922 -23.93656 -22.48022 -22.01509 -21.93743 -19.53257 -18.87433 -18.46323 -17.95326 -16.55064 -16.47008 -16.34222 -16.17078 -15.81076 -15.30164 -14.77165 -14.63898 -14.18306 -13.95201 -13.83217 -13.38382 -13.34401 -12.93708 -12.73897 -12.61656 -12.35547 -12.27902 -12.02384 -11.91636 -11.82360 -11.67637 -11.59372 -11.50588 -11.35143 -11.25566 -11.02074 -10.75387 -10.58553 -8.71526 -8.28470 -6.32354 -0.03495 0.42330 1.04639 1.15148 1.37608 1.39228 1.51442 1.53282 2.37176 2.97274 3.06975 3.45047 3.87564 3.90376 3.95548 3.98968 4.06853 4.14665 4.35725 4.46968 4.50762 4.53475 4.66545 4.73642 4.74974 4.87355 4.90214 4.97431 5.02932 5.04489 5.24341 5.33781 5.43174 5.45023 5.52179 5.63847 5.64817 6.28017 6.35052 6.75057 7.32010 7.39830 8.87925 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.002706 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.794488 B =10343.102398 C =10809.129455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.028 4.028 5 C 0.164 3.836 6 N -0.316 5.316 7 N -0.327 5.327 8 C 0.173 3.827 9 S 0.040 5.960 10 C -0.100 4.100 11 C -0.079 4.079 12 C -0.006 4.006 13 C -0.531 4.531 14 H 0.037 0.963 15 C 0.005 3.995 16 N -0.949 5.949 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.248 1.248 21 N -0.307 5.307 22 N -0.581 5.581 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.266 0.734 39 H 0.381 0.619 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 -32.195 -4.282 34.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.108 4.108 6 N -0.156 5.156 7 N -0.172 5.172 8 C -0.203 4.203 9 S 0.270 5.730 10 C -0.250 4.250 11 C -0.119 4.119 12 C -0.046 4.046 13 C -0.569 4.569 14 H 0.056 0.944 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.172 1.172 21 N -0.088 5.088 22 N -0.218 5.218 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.201 0.799 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.959 -30.758 -4.135 33.259 hybrid contribution 0.156 -0.773 0.978 1.256 sum -11.803 -31.531 -3.157 33.816 Atomic orbital electron populations 1.21796 0.95831 1.02163 1.01662 1.21483 0.95926 0.94640 1.03392 1.21594 0.92296 0.98807 1.02350 1.20358 0.96633 0.83144 1.06645 1.26298 1.03342 0.98765 0.82384 1.73877 1.17039 0.99278 1.25421 1.74791 1.21340 1.13757 1.07274 1.26943 1.05526 0.93037 0.94808 1.85560 1.80152 0.99818 1.07463 1.23664 1.05378 0.96961 0.98970 1.21089 1.01017 0.91168 0.98576 1.19500 0.96548 0.93258 0.95255 1.21447 1.43723 0.97780 0.93972 0.94434 1.25976 0.94252 0.94663 1.04291 1.70058 1.46580 1.04816 1.37515 0.85701 0.79917 0.77969 0.79362 1.19173 1.20928 1.17174 1.45024 1.50625 1.09557 1.03596 1.59633 1.13303 1.54003 0.94817 0.92636 0.91788 0.93546 0.89992 0.91240 0.92991 0.91630 0.86885 0.87237 0.89124 0.89345 0.91575 0.91691 0.95930 0.95965 0.92484 0.79892 0.78780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.12 -0.70 5.93 30.59 0.18 -0.52 16 3 C -0.11 -1.08 5.20 30.59 0.16 -0.93 16 4 C -0.03 -0.29 5.52 29.85 0.16 -0.12 16 5 C 0.16 3.50 7.38 137.63 1.02 4.51 16 6 N -0.32 -9.82 12.17 -49.53 -0.60 -10.42 16 7 N -0.33 -11.29 11.60 -56.85 -0.66 -11.95 16 8 C 0.17 5.07 8.20 179.55 1.47 6.54 16 9 S 0.04 1.16 22.27 -56.49 -1.26 -0.10 16 10 C -0.10 -3.37 5.23 71.98 0.38 -2.99 16 11 C -0.08 -3.08 5.16 30.60 0.16 -2.92 16 12 C -0.01 -0.30 4.04 29.85 0.12 -0.17 16 13 C -0.53 -30.91 9.66 25.60 0.25 -30.66 16 14 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 15 C 0.01 0.31 5.47 84.66 0.46 0.77 16 16 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 17 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 21 N -0.31 -6.48 3.81 -185.33 -0.71 -7.19 16 22 N -0.58 -6.88 10.41 37.02 0.39 -6.49 16 23 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 37 H 0.02 1.02 7.57 -2.38 -0.02 1.00 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.38 2.70 9.21 -210.56 -1.94 0.76 16 40 H 0.39 2.04 8.85 -210.56 -1.86 0.18 16 Total: -1.00 -76.12 349.11 1.60 -74.53 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.82 Total: 1.27 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 5.07 Total: -26.96 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -1.28 Total: -95.90 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.26 Total: -0.10 kcal Total: -76.12 1.60 -74.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182890775.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.208 kcal (2) G-P(sol) polarization free energy of solvation -76.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds