Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46720 * 2 1 4 4 H 1.08994 * 109.47388 * 55.00174 * 3 2 1 5 5 C 1.50706 * 109.46766 * 175.00019 * 3 2 1 6 6 H 1.07997 * 119.99819 * 119.99472 * 5 3 2 7 7 C 1.37873 * 119.99787 * 299.99914 * 5 3 2 8 8 N 1.31523 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47353 * 89.99430 * 9 7 5 11 11 H 1.48498 * 109.47308 * 209.99565 * 9 7 5 12 12 H 1.48502 * 109.46822 * 329.99504 * 9 7 5 13 13 O 1.45205 * 109.46805 * 294.99333 * 3 2 1 14 14 C 1.34228 * 116.99478 * 90.00795 * 13 3 2 15 15 O 1.20823 * 120.00402 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99596 * 179.97438 * 14 13 3 17 17 H 1.08994 * 109.50120 * 300.05980 * 16 14 13 18 18 C 1.53040 * 109.49403 * 179.97438 * 16 14 13 19 19 C 1.53041 * 109.53676 * 178.65166 * 18 16 14 20 20 C 1.53191 * 109.31534 * 61.36510 * 19 18 16 21 21 N 1.46931 * 108.77319 * 305.36759 * 20 19 18 22 22 C 1.34778 * 120.62624 * 233.58478 * 21 20 19 23 23 N 1.34774 * 120.00257 * 4.74916 * 22 21 20 24 24 O 1.21593 * 119.99575 * 185.02726 * 22 21 20 25 25 C 1.46920 * 118.74052 * 53.85721 * 21 20 19 26 26 H 1.08996 * 109.46729 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47370 * 299.99962 * 1 2 3 28 28 H 1.08997 * 109.46963 * 60.00678 * 1 2 3 29 29 H 1.08997 * 109.47370 * 240.00038 * 2 1 3 30 30 H 1.08997 * 109.46963 * 119.99322 * 2 1 3 31 31 H 0.96999 * 119.99740 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.46507 * 58.63320 * 18 16 14 33 33 H 1.09001 * 109.46402 * 298.66583 * 18 16 14 34 34 H 1.09001 * 109.50115 * 301.41272 * 19 18 16 35 35 H 1.08998 * 109.50048 * 181.31822 * 19 18 16 36 36 H 1.08999 * 109.59062 * 185.58001 * 20 19 18 37 37 H 1.09003 * 109.70561 * 65.22270 * 20 19 18 38 38 H 0.97004 * 120.00122 * 175.20610 * 23 22 21 39 39 H 0.97000 * 119.99974 * 355.21958 * 23 22 21 40 40 H 1.08998 * 109.58538 * 65.92924 * 25 21 20 41 41 H 1.09000 * 109.58889 * 186.35200 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0049 0.8813 1.3819 10 1 6.4416 2.1143 2.0849 11 1 6.4395 -0.3096 2.1551 12 1 6.6135 0.8416 0.0279 13 8 1.6559 2.0916 -1.2408 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0075 3.4224 -2.5086 17 1 0.7247 4.1961 -2.7822 18 6 -1.3617 4.0594 -2.2600 19 6 -1.8199 4.7960 -3.5208 20 6 -1.9545 3.7944 -4.6721 21 7 -0.6830 3.0736 -4.8228 22 6 -0.0579 3.0261 -6.0160 23 7 -0.5473 3.7219 -7.0613 24 8 0.9447 2.3515 -6.1505 25 6 -0.1092 2.4005 -3.6497 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.8291 -0.0602 2.9503 32 1 -1.2889 4.7657 -1.4331 33 1 -2.0841 3.2821 -2.0110 34 1 -1.0856 5.5571 -3.7847 35 1 -2.7843 5.2690 -3.3356 36 1 -2.1841 4.3271 -5.5950 37 1 -2.7525 3.0855 -4.4512 38 1 -0.0603 3.7439 -7.9000 39 1 -1.3864 4.2008 -6.9750 40 1 -0.7593 1.5805 -3.3446 41 1 0.8790 2.0132 -3.8977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187939812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = -150.468220 kcal Electronic energy + Delta-G solvation = -23567.603557 eV Core-core repulsion = 20060.266983 eV Total energy + Delta-G solvation = -3507.336574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84376 -41.01635 -38.57164 -37.46933 -35.53079 -35.07107 -33.46795 -33.28881 -32.25012 -29.31801 -26.48734 -25.92361 -24.94749 -23.10316 -22.05560 -21.16972 -20.52123 -19.47885 -18.83519 -18.46276 -17.94622 -17.23720 -17.09100 -16.49348 -16.20628 -15.81714 -15.40613 -15.35179 -14.86814 -14.78384 -14.34010 -14.15929 -14.07825 -13.57874 -13.35872 -13.26122 -13.13449 -12.80875 -12.64685 -12.48748 -12.16120 -12.02862 -12.00325 -11.77017 -11.72265 -11.42931 -11.35377 -11.16117 -10.82213 -10.70590 -10.53221 -9.67428 -8.28554 -6.45013 1.26353 1.39781 1.41645 1.53172 1.71406 2.07856 2.13016 2.41986 3.00791 3.23154 3.59616 3.71642 3.79456 4.00506 4.08125 4.21034 4.37071 4.39664 4.50748 4.55495 4.57158 4.69346 4.74727 4.83526 4.87779 5.02256 5.08693 5.14503 5.21457 5.35614 5.36937 5.43218 5.51208 5.66917 5.82516 5.97764 6.02561 6.14046 6.59323 6.92667 6.99190 7.26793 7.61470 8.78105 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.004409 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.440992 B = 6348.403793 C = 6950.859458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.010 0.990 5 C -0.553 4.553 6 H 0.061 0.939 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.978 3.022 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.267 1.267 13 O -0.366 6.366 14 C 0.452 3.548 15 O -0.534 6.534 16 C -0.086 4.086 17 H 0.110 0.890 18 C -0.100 4.100 19 C -0.123 4.123 20 C 0.103 3.897 21 N -0.623 5.623 22 C 0.701 3.299 23 N -0.843 5.843 24 O -0.645 6.645 25 C 0.148 3.852 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.271 0.729 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.421 0.579 39 H 0.413 0.587 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 9.582 -15.769 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.079 0.921 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.196 1.196 11 H -0.198 1.198 12 H -0.192 1.192 13 O -0.282 6.282 14 C 0.296 3.704 15 O -0.425 6.425 16 C -0.106 4.106 17 H 0.128 0.872 18 C -0.138 4.138 19 C -0.161 4.161 20 C -0.019 4.019 21 N -0.361 5.361 22 C 0.401 3.599 23 N -0.415 5.415 24 O -0.527 6.527 25 C 0.023 3.977 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.248 0.752 40 H 0.092 0.908 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.869 8.997 -15.223 22.473 hybrid contribution 0.944 -0.047 0.507 1.072 sum -12.926 8.950 -14.716 21.534 Atomic orbital electron populations 1.21702 0.95970 1.00651 1.00216 1.21864 0.94766 0.98045 1.02169 1.20361 0.94393 0.89372 0.78663 0.97264 1.21338 0.90794 1.40055 1.06831 0.92118 1.25752 1.04089 0.93806 0.94341 1.70005 1.37340 1.37904 1.09781 0.85257 0.77915 0.78169 0.78536 1.19604 1.19776 1.19176 1.86504 1.36265 1.62923 1.42552 1.24073 0.79493 0.76172 0.90698 1.90583 1.55777 1.58912 1.37188 1.21566 1.01008 0.98447 0.89555 0.87213 1.21444 0.92474 1.00294 0.99604 1.21938 1.04051 0.97562 0.92577 1.22084 0.83957 0.95055 1.00787 1.47210 1.25225 1.56526 1.07137 1.16118 0.82169 0.80109 0.81538 1.42879 1.29139 1.55489 1.13980 1.90973 1.29786 1.47713 1.84195 1.21146 1.00338 0.92982 0.83200 0.92024 0.94314 0.94286 0.93972 0.89541 0.91988 0.91272 0.90998 0.90787 0.86739 0.86604 0.89570 0.74598 0.75248 0.90826 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.04 16 2 C -0.13 -6.75 5.49 30.60 0.17 -6.58 16 3 C 0.23 12.61 2.25 29.85 0.07 12.67 16 4 H 0.01 0.59 7.16 -2.39 -0.02 0.58 16 5 C -0.55 -32.52 8.90 25.60 0.23 -32.29 16 6 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -53.03 11.30 21.45 0.24 -52.79 16 9 Si 0.98 44.22 29.54 68.60 2.03 46.25 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 O -0.37 -18.24 9.74 -51.39 -0.50 -18.74 16 14 C 0.45 18.85 5.71 71.24 0.41 19.26 16 15 O -0.53 -24.40 13.12 21.97 0.29 -24.12 16 16 C -0.09 -2.53 2.79 -11.32 -0.03 -2.56 16 17 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 18 C -0.10 -2.18 4.46 30.62 0.14 -2.05 16 19 C -0.12 -1.45 6.08 30.67 0.19 -1.27 16 20 C 0.10 1.11 6.43 86.36 0.56 1.67 16 21 N -0.62 -13.34 2.97 -836.06 -2.48 -15.82 16 22 C 0.70 17.24 8.57 179.05 1.54 18.77 16 23 N -0.84 -10.63 8.79 -184.74 -1.62 -12.26 16 24 O -0.64 -23.67 16.61 -4.01 -0.07 -23.73 16 25 C 0.15 4.29 5.67 86.51 0.49 4.78 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.04 1.79 7.80 -2.39 -0.02 1.78 16 28 H 0.04 1.63 6.06 -2.39 -0.01 1.61 16 29 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 4.86 5.95 -2.39 -0.01 4.85 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 0.38 5.57 -2.39 -0.01 0.37 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.42 4.51 8.93 -92.71 -0.83 3.68 16 39 H 0.41 1.93 6.29 -92.71 -0.58 1.35 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 2.76 7.03 -2.39 -0.02 2.74 16 Total: -1.00 -78.37 327.67 2.34 -76.03 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.35 Total: 16.22 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.81 Total: 8.95 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -3.86 Total: -80.86 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -0.28 Total: -66.59 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.37 2.34 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187939812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.434 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds