Wall clock time and date at job start Tue Mar 31 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46792 * 2 1 4 4 H 1.08995 * 109.47066 * 54.99851 * 3 2 1 5 5 C 1.50696 * 109.47077 * 174.99876 * 3 2 1 6 6 H 1.07998 * 119.99981 * 119.99628 * 5 3 2 7 7 C 1.37881 * 120.00209 * 300.00142 * 5 3 2 8 8 N 1.31510 * 120.00208 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99825 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.46981 * 90.00300 * 9 7 5 11 11 H 1.48497 * 109.47104 * 210.00102 * 9 7 5 12 12 H 1.48497 * 109.46666 * 330.00410 * 9 7 5 13 13 O 1.45198 * 109.46886 * 294.99878 * 3 2 1 14 14 C 1.34223 * 117.00147 * 90.00387 * 13 3 2 15 15 O 1.20825 * 120.00345 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00193 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.52175 * 59.92094 * 16 14 13 18 18 C 1.53040 * 109.49864 * 179.97438 * 16 14 13 19 19 C 1.53044 * 109.52893 * 181.32559 * 18 16 14 20 20 C 1.53192 * 109.30894 * 298.61965 * 19 18 16 21 21 N 1.46924 * 108.76849 * 54.65216 * 20 19 18 22 22 C 1.34776 * 120.63004 * 126.36085 * 21 20 19 23 23 N 1.34785 * 120.00058 * 354.98748 * 22 21 20 24 24 O 1.21582 * 120.00036 * 174.98368 * 22 21 20 25 25 C 1.46921 * 118.73992 * 306.38445 * 21 20 19 26 26 H 1.09002 * 109.47536 * 299.99906 * 1 2 3 27 27 H 1.08993 * 109.47224 * 60.00288 * 1 2 3 28 28 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47280 * 239.99662 * 2 1 3 30 30 H 1.09001 * 109.46626 * 119.99515 * 2 1 3 31 31 H 0.97003 * 119.99872 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46592 * 301.34205 * 18 16 14 33 33 H 1.08997 * 109.45819 * 61.31344 * 18 16 14 34 34 H 1.08994 * 109.49760 * 58.58003 * 19 18 16 35 35 H 1.08994 * 109.49883 * 178.67991 * 19 18 16 36 36 H 1.09005 * 109.59891 * 294.86074 * 20 19 18 37 37 H 1.08998 * 109.70273 * 174.50778 * 20 19 18 38 38 H 0.96994 * 119.99865 * 5.05694 * 23 22 21 39 39 H 0.96997 * 119.99679 * 185.06268 * 23 22 21 40 40 H 1.09007 * 109.58752 * 293.81755 * 25 21 20 41 41 H 1.09001 * 109.58716 * 173.39586 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8797 1.3359 9 14 3.0963 0.1101 2.5708 10 1 2.8745 -1.3259 2.2647 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6394 13 8 1.6558 2.0916 -1.2407 14 6 0.4727 2.7253 -1.2560 15 8 -0.2193 2.7370 -0.2656 16 6 0.0074 3.4224 -2.5085 17 1 -0.0702 2.6993 -3.3204 18 6 -1.3618 4.0594 -2.2599 19 6 -1.8499 4.7393 -3.5412 20 6 -0.8661 5.8460 -3.9338 21 7 0.4809 5.2676 -4.0333 22 6 1.2148 5.4250 -5.1527 23 7 0.6781 6.0303 -6.2309 24 8 2.3610 5.0212 -5.1900 25 6 1.0123 4.5140 -2.8896 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8770 0.4819 2.1129 32 1 -2.0730 3.2880 -1.9646 33 1 -1.2786 4.8002 -1.4648 34 1 -1.9094 4.0038 -4.3434 35 1 -2.8354 5.1726 -3.3704 36 1 -0.8729 6.6277 -3.1741 37 1 -1.1541 6.2693 -4.8961 38 1 -0.2095 6.4176 -6.1779 39 1 1.1796 6.0783 -7.0597 40 1 1.1588 5.1870 -2.0447 41 1 1.9628 4.0561 -3.1636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187939870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:15 Heat of formation + Delta-G solvation = -116.536336 kcal Electronic energy + Delta-G solvation = -23588.647726 eV Core-core repulsion = 20082.782549 eV Total energy + Delta-G solvation = -3505.865177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68303 -39.75088 -37.49285 -35.97362 -34.14126 -33.58224 -32.49700 -31.95015 -31.30462 -27.83372 -25.60041 -24.61567 -22.85988 -22.12942 -20.85123 -19.85431 -19.43987 -18.59873 -17.42802 -16.99886 -16.51463 -16.00948 -15.79168 -15.19499 -14.95571 -14.77042 -14.45927 -14.10152 -13.60528 -13.37950 -13.17330 -13.07313 -12.74701 -12.46291 -11.99921 -11.72327 -11.64716 -11.43004 -11.27499 -11.16304 -11.12592 -10.73944 -10.72447 -10.27490 -10.03571 -9.88818 -9.82929 -9.60716 -9.48352 -9.05176 -8.76804 -8.63309 -6.19815 -4.22107 2.50681 2.86245 3.11328 3.19520 3.31783 3.33811 3.45277 3.91501 4.28090 4.51290 4.60214 4.65750 4.85419 5.08816 5.10022 5.11731 5.30596 5.46906 5.57023 5.64103 5.68912 5.80819 5.83092 5.90903 5.98868 6.05077 6.15134 6.26793 6.44853 6.55647 6.60302 6.67122 6.72780 6.76576 7.07119 7.38025 7.54667 7.70468 8.24510 8.50481 8.60526 8.89347 9.36960 10.92245 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.004683 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.336845 B = 5977.273149 C = 6815.926005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.197 3.803 4 H 0.046 0.954 5 C -0.525 4.525 6 H 0.088 0.912 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.261 1.261 13 O -0.337 6.337 14 C 0.459 3.541 15 O -0.514 6.514 16 C -0.097 4.097 17 H 0.106 0.894 18 C -0.104 4.104 19 C -0.134 4.134 20 C 0.109 3.891 21 N -0.627 5.627 22 C 0.708 3.292 23 N -0.870 5.870 24 O -0.583 6.583 25 C 0.139 3.861 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.269 0.731 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.394 0.606 39 H 0.413 0.587 40 H 0.074 0.926 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.054 9.479 -12.124 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.563 4.563 6 H 0.106 0.894 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.705 3.295 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.186 1.186 13 O -0.252 6.252 14 C 0.301 3.699 15 O -0.404 6.404 16 C -0.117 4.117 17 H 0.124 0.876 18 C -0.141 4.141 19 C -0.172 4.172 20 C -0.015 4.015 21 N -0.365 5.365 22 C 0.407 3.593 23 N -0.441 5.441 24 O -0.459 6.459 25 C 0.016 3.984 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.224 0.776 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.281 9.082 -11.549 21.930 hybrid contribution -0.811 -0.388 0.552 1.055 sum -17.092 8.695 -10.997 22.106 Atomic orbital electron populations 1.21891 0.97042 0.99953 1.01686 1.22368 0.94300 0.99695 1.02253 1.20980 0.96384 0.88050 0.80284 0.93591 1.20818 0.87739 1.39826 1.07872 0.89363 1.24734 0.94914 0.95298 0.97350 1.69843 1.08485 1.44337 1.29752 0.87009 0.80998 0.80120 0.81341 1.19972 1.21711 1.18552 1.86529 1.34142 1.62099 1.42395 1.23099 0.80704 0.76901 0.89157 1.90604 1.55492 1.58762 1.35559 1.21392 0.96791 0.98150 0.95375 0.87558 1.21403 0.94579 1.00717 0.97431 1.21943 0.98642 0.98247 0.98351 1.21702 0.81990 0.96030 1.01762 1.47233 1.16730 1.57287 1.15288 1.15857 0.84341 0.78825 0.80237 1.43163 1.22310 1.64596 1.14038 1.91022 1.16319 1.55873 1.82710 1.21403 0.97438 0.92149 0.87425 0.92560 0.93662 0.93980 0.91198 0.91799 0.92093 0.90494 0.90594 0.91196 0.90081 0.90896 0.90447 0.77578 0.75519 0.90753 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.57 37.16 0.32 -2.58 16 2 C -0.15 -3.38 5.15 -26.73 -0.14 -3.52 16 3 C 0.20 4.94 1.84 -27.88 -0.05 4.89 16 4 H 0.05 1.21 6.21 -51.93 -0.32 0.89 16 5 C -0.52 -15.18 9.48 -34.44 -0.33 -15.50 16 6 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 7 C 0.08 2.32 5.45 -17.82 -0.10 2.23 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.88 21.73 24.41 -169.99 -4.15 17.58 16 10 H -0.27 -6.50 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 13 O -0.34 -7.61 9.74 -39.24 -0.38 -8.00 16 14 C 0.46 8.70 5.71 36.01 0.21 8.90 16 15 O -0.51 -10.57 13.12 -18.75 -0.25 -10.82 16 16 C -0.10 -1.35 2.78 -91.65 -0.25 -1.60 16 17 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 18 C -0.10 -1.12 4.46 -26.69 -0.12 -1.24 16 19 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 20 C 0.11 0.78 6.43 -3.71 -0.02 0.76 16 21 N -0.63 -7.17 2.97 -178.50 -0.53 -7.70 16 22 C 0.71 9.19 8.57 -86.91 -0.74 8.44 16 23 N -0.87 -6.74 8.79 27.64 0.24 -6.50 16 24 O -0.58 -10.66 16.61 5.29 0.09 -10.57 16 25 C 0.14 1.99 5.63 -3.72 -0.02 1.96 16 26 H 0.06 1.14 7.80 -51.93 -0.40 0.73 16 27 H 0.04 0.85 6.06 -51.93 -0.31 0.53 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.06 1.50 3.22 -51.93 -0.17 1.34 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 33 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.33 5.56 -51.93 -0.29 0.04 16 38 H 0.39 1.76 6.29 -40.82 -0.26 1.51 16 39 H 0.41 2.75 8.93 -40.82 -0.36 2.38 16 40 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 41 H 0.11 1.96 7.03 -51.93 -0.37 1.59 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -35.22 320.87 -6.67 -41.89 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.89 Total: 3.91 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.41 Total: 1.59 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.49 Total: -40.43 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.54 Total: -29.38 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.15 Total: 17.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.22 -6.67 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187939870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.647 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds