Wall clock time and date at job start Tue Mar 31 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46792 * 2 1 4 4 H 1.08995 * 109.47066 * 54.99851 * 3 2 1 5 5 C 1.50696 * 109.47077 * 174.99876 * 3 2 1 6 6 H 1.07998 * 119.99981 * 119.99628 * 5 3 2 7 7 C 1.37881 * 120.00209 * 300.00142 * 5 3 2 8 8 N 1.31510 * 120.00208 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99825 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.46981 * 90.00300 * 9 7 5 11 11 H 1.48497 * 109.47104 * 210.00102 * 9 7 5 12 12 H 1.48497 * 109.46666 * 330.00410 * 9 7 5 13 13 O 1.45198 * 109.46886 * 294.99878 * 3 2 1 14 14 C 1.34223 * 117.00147 * 90.00387 * 13 3 2 15 15 O 1.20825 * 120.00345 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00193 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.52175 * 59.92094 * 16 14 13 18 18 C 1.53040 * 109.49864 * 179.97438 * 16 14 13 19 19 C 1.53044 * 109.52893 * 181.32559 * 18 16 14 20 20 C 1.53192 * 109.30894 * 298.61965 * 19 18 16 21 21 N 1.46924 * 108.76849 * 54.65216 * 20 19 18 22 22 C 1.34776 * 120.63004 * 126.36085 * 21 20 19 23 23 N 1.34785 * 120.00058 * 354.98748 * 22 21 20 24 24 O 1.21582 * 120.00036 * 174.98368 * 22 21 20 25 25 C 1.46921 * 118.73992 * 306.38445 * 21 20 19 26 26 H 1.09002 * 109.47536 * 299.99906 * 1 2 3 27 27 H 1.08993 * 109.47224 * 60.00288 * 1 2 3 28 28 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47280 * 239.99662 * 2 1 3 30 30 H 1.09001 * 109.46626 * 119.99515 * 2 1 3 31 31 H 0.97003 * 119.99872 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46592 * 301.34205 * 18 16 14 33 33 H 1.08997 * 109.45819 * 61.31344 * 18 16 14 34 34 H 1.08994 * 109.49760 * 58.58003 * 19 18 16 35 35 H 1.08994 * 109.49883 * 178.67991 * 19 18 16 36 36 H 1.09005 * 109.59891 * 294.86074 * 20 19 18 37 37 H 1.08998 * 109.70273 * 174.50778 * 20 19 18 38 38 H 0.96994 * 119.99865 * 5.05694 * 23 22 21 39 39 H 0.96997 * 119.99679 * 185.06268 * 23 22 21 40 40 H 1.09007 * 109.58752 * 293.81755 * 25 21 20 41 41 H 1.09001 * 109.58716 * 173.39586 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4539 0.8797 1.3359 9 14 3.0963 0.1101 2.5708 10 1 2.8745 -1.3259 2.2647 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8094 2.6394 13 8 1.6558 2.0916 -1.2407 14 6 0.4727 2.7253 -1.2560 15 8 -0.2193 2.7370 -0.2656 16 6 0.0074 3.4224 -2.5085 17 1 -0.0702 2.6993 -3.3204 18 6 -1.3618 4.0594 -2.2599 19 6 -1.8499 4.7393 -3.5412 20 6 -0.8661 5.8460 -3.9338 21 7 0.4809 5.2676 -4.0333 22 6 1.2148 5.4250 -5.1527 23 7 0.6781 6.0303 -6.2309 24 8 2.3610 5.0212 -5.1900 25 6 1.0123 4.5140 -2.8896 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8770 0.4819 2.1129 32 1 -2.0730 3.2880 -1.9646 33 1 -1.2786 4.8002 -1.4648 34 1 -1.9094 4.0038 -4.3434 35 1 -2.8354 5.1726 -3.3704 36 1 -0.8729 6.6277 -3.1741 37 1 -1.1541 6.2693 -4.8961 38 1 -0.2095 6.4176 -6.1779 39 1 1.1796 6.0783 -7.0597 40 1 1.1588 5.1870 -2.0447 41 1 1.9628 4.0561 -3.1636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187939870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:15 Heat of formation + Delta-G solvation = -143.354734 kcal Electronic energy + Delta-G solvation = -23589.810659 eV Core-core repulsion = 20082.782549 eV Total energy + Delta-G solvation = -3507.028110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92557 -41.08928 -38.66181 -37.57300 -35.57027 -35.09067 -33.95453 -33.37079 -32.27838 -29.79310 -26.50376 -25.91680 -24.66739 -23.27713 -22.27707 -21.27691 -20.54862 -19.53846 -19.13873 -18.47615 -17.94164 -17.66101 -17.15718 -16.50520 -16.28640 -15.82527 -15.51437 -15.37115 -15.14992 -14.83401 -14.38735 -14.20783 -14.04028 -13.93663 -13.83886 -13.38137 -13.18087 -13.12441 -12.62348 -12.53337 -12.03991 -12.02634 -12.00767 -11.72792 -11.59661 -11.51863 -11.36501 -11.20836 -11.10574 -10.74816 -10.72126 -9.68681 -8.45266 -6.54518 1.17430 1.22337 1.29409 1.39756 1.67628 2.00306 2.10964 2.18622 2.86545 3.21966 3.56288 3.68823 3.73771 3.99912 4.04776 4.08185 4.11687 4.16985 4.32617 4.50353 4.54679 4.56872 4.69979 4.74519 4.88329 4.92392 4.94386 5.02317 5.02672 5.14000 5.30873 5.34554 5.37981 5.40360 5.68206 5.81225 6.01368 6.15055 6.50117 6.88343 6.91942 7.10789 7.60557 8.71174 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.004683 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.336845 B = 5977.273149 C = 6815.926005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.040 0.960 7 C 0.029 3.971 8 N -0.932 5.932 9 Si 0.942 3.058 10 H -0.250 1.250 11 H -0.283 1.283 12 H -0.252 1.252 13 O -0.356 6.356 14 C 0.455 3.545 15 O -0.527 6.527 16 C -0.084 4.084 17 H 0.116 0.884 18 C -0.100 4.100 19 C -0.123 4.123 20 C 0.101 3.899 21 N -0.623 5.623 22 C 0.700 3.300 23 N -0.842 5.842 24 O -0.646 6.646 25 C 0.144 3.856 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.275 0.725 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.414 0.586 39 H 0.421 0.579 40 H 0.070 0.930 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.023 9.773 -12.668 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.147 3.853 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.058 0.942 7 C -0.170 4.170 8 N -0.570 5.570 9 Si 0.766 3.234 10 H -0.176 1.176 11 H -0.210 1.210 12 H -0.176 1.176 13 O -0.272 6.272 14 C 0.298 3.702 15 O -0.417 6.417 16 C -0.104 4.104 17 H 0.134 0.866 18 C -0.138 4.138 19 C -0.161 4.161 20 C -0.020 4.020 21 N -0.360 5.360 22 C 0.400 3.600 23 N -0.414 5.414 24 O -0.528 6.528 25 C 0.019 3.981 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.248 0.752 39 H 0.254 0.746 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.335 9.422 -12.137 25.487 hybrid contribution 0.454 -0.356 0.631 0.855 sum -19.881 9.065 -11.506 24.695 Atomic orbital electron populations 1.21802 0.94167 1.02097 1.01547 1.22272 0.96816 0.97366 1.02035 1.20650 0.93763 0.89896 0.81016 0.94907 1.21012 0.89982 1.39919 1.07133 0.94157 1.25616 0.96129 0.95521 0.99763 1.69979 1.10546 1.45503 1.31006 0.85954 0.79310 0.80238 0.77870 1.17560 1.20966 1.17635 1.86533 1.36546 1.62968 1.41188 1.24089 0.79205 0.76119 0.90764 1.90580 1.55478 1.59102 1.36570 1.21494 0.98308 0.97769 0.92848 0.86600 1.21462 0.92112 1.00630 0.99568 1.21939 0.99869 0.98071 0.96227 1.22104 0.79292 0.96240 1.04406 1.47194 1.18254 1.56715 1.13885 1.16139 0.83717 0.78842 0.81328 1.42869 1.22995 1.62887 1.12676 1.90986 1.19330 1.58569 1.83900 1.21071 0.96181 0.92447 0.88424 0.93165 0.93320 0.90663 0.91192 0.92232 0.91552 0.90467 0.91136 0.90560 0.86644 0.89798 0.86640 0.75213 0.74608 0.91223 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.57 71.98 0.62 -4.50 16 2 C -0.15 -6.60 5.15 30.60 0.16 -6.44 16 3 C 0.20 10.35 1.84 29.85 0.05 10.40 16 4 H 0.03 1.77 6.21 -2.39 -0.01 1.76 16 5 C -0.54 -33.05 9.48 25.60 0.24 -32.81 16 6 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 7 C 0.03 1.74 5.45 84.66 0.46 2.20 16 8 N -0.93 -58.77 13.96 21.45 0.30 -58.48 16 9 Si 0.94 44.93 24.41 68.60 1.67 46.61 16 10 H -0.25 -11.02 6.83 99.48 0.68 -10.34 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 13 O -0.36 -16.80 9.74 -51.35 -0.50 -17.30 16 14 C 0.45 17.40 5.71 71.24 0.41 17.81 16 15 O -0.53 -21.45 13.12 21.97 0.29 -21.17 16 16 C -0.08 -2.30 2.78 -11.46 -0.03 -2.33 16 17 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 18 C -0.10 -1.92 4.46 30.62 0.14 -1.79 16 19 C -0.12 -1.25 6.08 30.67 0.19 -1.06 16 20 C 0.10 1.06 6.43 86.36 0.56 1.62 16 21 N -0.62 -13.48 2.97 -836.92 -2.49 -15.97 16 22 C 0.70 17.71 8.57 179.05 1.53 19.24 16 23 N -0.84 -10.97 8.79 -184.74 -1.62 -12.60 16 24 O -0.65 -24.64 16.61 -3.97 -0.07 -24.70 16 25 C 0.14 4.22 5.63 86.36 0.49 4.71 16 26 H 0.05 1.90 7.80 -2.39 -0.02 1.89 16 27 H 0.05 1.73 6.06 -2.39 -0.01 1.72 16 28 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.06 2.70 3.22 -2.39 -0.01 2.69 16 31 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 32 H 0.08 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 37 H 0.12 0.35 5.56 -2.39 -0.01 0.34 16 38 H 0.41 2.00 6.29 -92.71 -0.58 1.42 16 39 H 0.42 4.73 8.93 -92.71 -0.83 3.90 16 40 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.07 2.73 7.03 -2.39 -0.02 2.72 16 Total: -1.00 -82.63 320.87 1.96 -80.67 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -0.43 Total: 15.88 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 4.81 Total: 7.05 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -3.81 Total: -87.04 kcal Atomic # 8 Polarization: -62.89 SS G_CDS: -0.28 Total: -63.17 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.67 Total: 46.61 kcal Total: -82.63 1.96 -80.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187939870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.687 kcal (2) G-P(sol) polarization free energy of solvation -82.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds