Wall clock time and date at job start Tue Mar 31 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47030 * 2 1 4 4 H 1.09006 * 109.47390 * 305.59396 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.59587 * 3 2 1 6 6 H 1.07996 * 119.99678 * 268.92561 * 5 3 2 7 7 C 1.37874 * 120.00117 * 88.92825 * 5 3 2 8 8 N 1.31517 * 120.00068 * 185.71525 * 7 5 3 9 9 Si 1.86797 * 120.00002 * 5.71348 * 7 5 3 10 10 H 1.48502 * 109.47245 * 91.80217 * 9 7 5 11 11 H 1.48506 * 109.47141 * 211.80523 * 9 7 5 12 12 H 1.48499 * 109.47072 * 331.80100 * 9 7 5 13 13 O 1.45202 * 109.46894 * 65.59496 * 3 2 1 14 14 C 1.34230 * 117.00240 * 269.99631 * 13 3 2 15 15 O 1.20826 * 119.99568 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00325 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.52598 * 60.08059 * 16 14 13 18 18 C 1.53035 * 109.50041 * 180.16306 * 16 14 13 19 19 C 1.53041 * 109.54221 * 181.31527 * 18 16 14 20 20 C 1.53626 * 109.23939 * 298.51236 * 19 18 16 21 21 N 1.46926 * 108.54123 * 54.85586 * 20 19 18 22 22 C 1.34781 * 120.62966 * 126.36784 * 21 20 19 23 23 N 1.34773 * 120.00060 * 354.40354 * 22 21 20 24 24 O 1.21590 * 119.99915 * 174.40042 * 22 21 20 25 25 C 1.46925 * 118.73877 * 306.09048 * 21 20 19 26 26 H 1.09004 * 109.47132 * 299.99742 * 1 2 3 27 27 H 1.09000 * 109.47209 * 59.99909 * 1 2 3 28 28 H 1.09006 * 109.47591 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47132 * 240.00258 * 2 1 3 30 30 H 1.08991 * 109.47083 * 120.00270 * 2 1 3 31 31 H 0.96999 * 119.99756 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46650 * 301.34078 * 18 16 14 33 33 H 1.09007 * 109.46088 * 61.30791 * 18 16 14 34 34 H 1.08997 * 109.49288 * 58.58492 * 19 18 16 35 35 H 1.09000 * 109.50077 * 178.65297 * 19 18 16 36 36 H 1.08994 * 109.74083 * 295.11625 * 20 19 18 37 37 H 1.09002 * 109.66057 * 174.54221 * 20 19 18 38 38 H 0.96999 * 120.00095 * 5.40453 * 23 22 21 39 39 H 0.97005 * 120.00139 * 185.40723 * 23 22 21 40 40 H 1.08998 * 109.58450 * 173.65566 * 25 21 20 41 41 H 1.09008 * 109.58214 * 294.07470 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1385 6 1 4.1642 1.4327 0.7431 7 6 4.1173 1.4623 -1.3908 8 7 5.4217 1.3509 -1.5156 9 14 3.0458 1.6442 -2.9100 10 1 2.9239 3.0821 -3.2606 11 1 3.6640 0.9092 -4.0427 12 1 1.6976 1.0858 -2.6347 13 8 1.6680 2.0873 1.2467 14 6 0.4850 2.7210 1.2757 15 8 -0.2165 2.7360 0.2922 16 6 0.0320 3.4138 2.5350 17 1 0.7504 4.1884 2.8033 18 6 -1.3410 4.0487 2.3032 19 6 -1.7873 4.7803 3.5711 20 6 -1.9103 3.7699 4.7218 21 7 -0.6331 3.0562 4.8554 22 6 0.0049 3.0061 6.0416 23 7 -0.4681 3.7069 7.0912 24 8 1.0070 2.3287 6.1648 25 6 -0.0675 2.3927 3.6727 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.8275 1.3636 -2.3966 32 1 -1.2785 4.7577 1.4777 33 1 -2.0644 3.2706 2.0594 34 1 -1.0518 5.5420 3.8295 35 1 -2.7544 5.2523 3.3974 36 1 -2.7058 3.0577 4.5029 37 1 -2.1334 4.2964 5.6498 38 1 -1.3093 4.1841 7.0163 39 1 0.0327 3.7341 7.9215 40 1 0.9255 2.0101 3.9083 41 1 -0.7159 1.5704 3.3700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187939899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:19 Heat of formation + Delta-G solvation = -124.684735 kcal Electronic energy + Delta-G solvation = -23636.930631 eV Core-core repulsion = 20130.712113 eV Total energy + Delta-G solvation = -3506.218519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67647 -39.70627 -37.46175 -35.89051 -34.14720 -33.40122 -32.50038 -31.98091 -31.30134 -27.82747 -25.59395 -24.60397 -22.94789 -22.08321 -20.64640 -19.78008 -19.38672 -18.62008 -17.50669 -17.04634 -16.55567 -15.87703 -15.75433 -15.25112 -14.98601 -14.60914 -14.30327 -14.11362 -13.58156 -13.27371 -13.20355 -13.10474 -12.79441 -12.22945 -12.07365 -11.80007 -11.54082 -11.35092 -11.25377 -11.12076 -10.98061 -10.75694 -10.72554 -10.30237 -10.15722 -9.93051 -9.84946 -9.68268 -9.36596 -9.03101 -8.78491 -8.66283 -6.24172 -4.27166 2.50748 2.89364 3.09086 3.20889 3.30123 3.35622 3.50920 3.90130 4.28294 4.52281 4.59814 4.66628 4.86003 5.04867 5.08982 5.14331 5.31708 5.50257 5.57277 5.67104 5.71103 5.80763 5.90997 5.99034 6.04902 6.06385 6.16202 6.26216 6.45097 6.58319 6.63318 6.74526 6.80527 6.83907 7.19125 7.39456 7.55806 7.68188 8.25643 8.47947 8.63983 8.88003 9.34848 10.87410 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004602 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.745071 B = 6083.284781 C = 6536.296100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.189 3.811 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.086 0.914 7 C 0.082 3.918 8 N -0.883 5.883 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.256 1.256 13 O -0.342 6.342 14 C 0.459 3.541 15 O -0.518 6.518 16 C -0.099 4.099 17 H 0.108 0.892 18 C -0.104 4.104 19 C -0.134 4.134 20 C 0.109 3.891 21 N -0.627 5.627 22 C 0.708 3.292 23 N -0.870 5.870 24 O -0.584 6.584 25 C 0.141 3.859 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.269 0.731 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.394 0.606 39 H 0.413 0.587 40 H 0.111 0.889 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.752 6.800 12.959 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.136 3.864 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.104 0.896 7 C -0.122 4.122 8 N -0.520 5.520 9 Si 0.691 3.309 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.180 1.180 13 O -0.257 6.257 14 C 0.301 3.699 15 O -0.408 6.408 16 C -0.119 4.119 17 H 0.126 0.874 18 C -0.141 4.141 19 C -0.172 4.172 20 C -0.015 4.015 21 N -0.366 5.366 22 C 0.408 3.592 23 N -0.441 5.441 24 O -0.461 6.461 25 C 0.018 3.982 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.224 0.776 39 H 0.245 0.755 40 H 0.130 0.870 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.086 6.247 12.425 22.030 hybrid contribution -0.712 0.464 -0.736 1.124 sum -17.797 6.710 11.689 22.325 Atomic orbital electron populations 1.21922 0.97545 0.99750 1.01426 1.22135 0.93560 0.99032 1.02402 1.21045 0.96181 0.88764 0.80382 0.93480 1.20810 0.87887 1.52133 0.94958 0.89597 1.24850 0.94927 0.93853 0.98529 1.69867 1.09576 1.48209 1.24301 0.87018 0.81668 0.79265 0.82967 1.19798 1.20670 1.18031 1.86638 1.34002 1.62045 1.43012 1.23104 0.80833 0.76816 0.89177 1.90594 1.55203 1.58502 1.36522 1.21410 0.99256 0.99112 0.92160 0.87404 1.21397 0.94727 1.00467 0.97527 1.22024 1.02422 0.97946 0.94826 1.21795 0.85775 0.94871 0.99011 1.47236 1.23575 1.57196 1.08549 1.15853 0.82699 0.80160 0.80494 1.43160 1.28331 1.56873 1.15709 1.91014 1.27031 1.44898 1.83139 1.21380 1.01942 0.92886 0.82040 0.93919 0.92813 0.94103 0.91159 0.91788 0.92065 0.90422 0.90736 0.91103 0.90130 0.90909 0.90434 0.77553 0.75500 0.87040 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.57 37.16 0.32 -2.56 16 2 C -0.13 -2.96 5.38 -26.73 -0.14 -3.11 16 3 C 0.19 4.73 1.78 -27.88 -0.05 4.68 16 4 H 0.05 1.23 4.50 -51.93 -0.23 0.99 16 5 C -0.52 -14.92 9.24 -34.44 -0.32 -15.24 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 8 N -0.88 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.87 21.37 26.61 -169.99 -4.52 16.84 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.26 -6.13 6.35 56.52 0.36 -5.77 16 13 O -0.34 -7.81 9.74 -39.26 -0.38 -8.19 16 14 C 0.46 8.84 5.74 36.00 0.21 9.05 16 15 O -0.52 -10.83 13.12 -18.75 -0.25 -11.08 16 16 C -0.10 -1.41 2.78 -91.66 -0.25 -1.67 16 17 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 18 C -0.10 -1.15 4.46 -26.69 -0.12 -1.27 16 19 C -0.13 -1.00 6.10 -26.38 -0.16 -1.16 16 20 C 0.11 0.77 6.46 -3.48 -0.02 0.75 16 21 N -0.63 -7.04 2.97 -178.23 -0.53 -7.57 16 22 C 0.71 9.02 8.57 -86.92 -0.74 8.28 16 23 N -0.87 -6.62 8.79 27.63 0.24 -6.38 16 24 O -0.58 -10.45 16.62 5.29 0.09 -10.36 16 25 C 0.14 1.95 5.63 -3.71 -0.02 1.93 16 26 H 0.04 0.79 6.05 -51.93 -0.31 0.48 16 27 H 0.05 1.08 7.83 -51.93 -0.41 0.68 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.58 7.53 -51.93 -0.39 1.19 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.07 0.85 8.13 -51.92 -0.42 0.43 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.32 5.57 -51.93 -0.29 0.03 16 38 H 0.39 1.73 6.29 -40.82 -0.26 1.47 16 39 H 0.41 2.70 8.93 -40.82 -0.36 2.33 16 40 H 0.11 1.86 7.04 -51.93 -0.37 1.50 16 41 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -34.93 325.83 -7.09 -42.02 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.02 Total: 3.65 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.41 Total: 1.94 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.49 Total: -39.74 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.54 Total: -29.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.52 Total: 16.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.93 -7.09 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187939899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.661 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds