Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47030 * 2 1 4 4 H 1.09006 * 109.47390 * 305.59396 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.59587 * 3 2 1 6 6 H 1.07996 * 119.99678 * 268.92561 * 5 3 2 7 7 C 1.37874 * 120.00117 * 88.92825 * 5 3 2 8 8 N 1.31517 * 120.00068 * 185.71525 * 7 5 3 9 9 Si 1.86797 * 120.00002 * 5.71348 * 7 5 3 10 10 H 1.48502 * 109.47245 * 91.80217 * 9 7 5 11 11 H 1.48506 * 109.47141 * 211.80523 * 9 7 5 12 12 H 1.48499 * 109.47072 * 331.80100 * 9 7 5 13 13 O 1.45202 * 109.46894 * 65.59496 * 3 2 1 14 14 C 1.34230 * 117.00240 * 269.99631 * 13 3 2 15 15 O 1.20826 * 119.99568 * 0.02562 * 14 13 3 16 16 C 1.50692 * 120.00325 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.52598 * 60.08059 * 16 14 13 18 18 C 1.53035 * 109.50041 * 180.16306 * 16 14 13 19 19 C 1.53041 * 109.54221 * 181.31527 * 18 16 14 20 20 C 1.53626 * 109.23939 * 298.51236 * 19 18 16 21 21 N 1.46926 * 108.54123 * 54.85586 * 20 19 18 22 22 C 1.34781 * 120.62966 * 126.36784 * 21 20 19 23 23 N 1.34773 * 120.00060 * 354.40354 * 22 21 20 24 24 O 1.21590 * 119.99915 * 174.40042 * 22 21 20 25 25 C 1.46925 * 118.73877 * 306.09048 * 21 20 19 26 26 H 1.09004 * 109.47132 * 299.99742 * 1 2 3 27 27 H 1.09000 * 109.47209 * 59.99909 * 1 2 3 28 28 H 1.09006 * 109.47591 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47132 * 240.00258 * 2 1 3 30 30 H 1.08991 * 109.47083 * 120.00270 * 2 1 3 31 31 H 0.96999 * 119.99756 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46650 * 301.34078 * 18 16 14 33 33 H 1.09007 * 109.46088 * 61.30791 * 18 16 14 34 34 H 1.08997 * 109.49288 * 58.58492 * 19 18 16 35 35 H 1.09000 * 109.50077 * 178.65297 * 19 18 16 36 36 H 1.08994 * 109.74083 * 295.11625 * 20 19 18 37 37 H 1.09002 * 109.66057 * 174.54221 * 20 19 18 38 38 H 0.96999 * 120.00095 * 5.40453 * 23 22 21 39 39 H 0.97005 * 120.00139 * 185.40723 * 23 22 21 40 40 H 1.08998 * 109.58450 * 173.65566 * 25 21 20 41 41 H 1.09008 * 109.58214 * 294.07470 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1385 6 1 4.1642 1.4327 0.7431 7 6 4.1173 1.4623 -1.3908 8 7 5.4217 1.3509 -1.5156 9 14 3.0458 1.6442 -2.9100 10 1 2.9239 3.0821 -3.2606 11 1 3.6640 0.9092 -4.0427 12 1 1.6976 1.0858 -2.6347 13 8 1.6680 2.0873 1.2467 14 6 0.4850 2.7210 1.2757 15 8 -0.2165 2.7360 0.2922 16 6 0.0320 3.4138 2.5350 17 1 0.7504 4.1884 2.8033 18 6 -1.3410 4.0487 2.3032 19 6 -1.7873 4.7803 3.5711 20 6 -1.9103 3.7699 4.7218 21 7 -0.6331 3.0562 4.8554 22 6 0.0049 3.0061 6.0416 23 7 -0.4681 3.7069 7.0912 24 8 1.0070 2.3287 6.1648 25 6 -0.0675 2.3927 3.6727 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.8275 1.3636 -2.3966 32 1 -1.2785 4.7577 1.4777 33 1 -2.0644 3.2706 2.0594 34 1 -1.0518 5.5420 3.8295 35 1 -2.7544 5.2523 3.3974 36 1 -2.7058 3.0577 4.5029 37 1 -2.1334 4.2964 5.6498 38 1 -1.3093 4.1841 7.0163 39 1 0.0327 3.7341 7.9215 40 1 0.9255 2.0101 3.9083 41 1 -0.7159 1.5704 3.3700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187939899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = -150.478618 kcal Electronic energy + Delta-G solvation = -23638.049138 eV Core-core repulsion = 20130.712113 eV Total energy + Delta-G solvation = -3507.337025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89369 -41.05398 -38.60893 -37.51015 -35.41384 -35.06984 -33.95176 -33.35504 -32.26367 -29.78024 -26.48506 -25.87749 -24.74181 -23.15437 -22.05424 -21.23800 -20.54002 -19.58131 -19.24604 -18.43993 -18.00271 -17.39225 -17.20701 -16.45259 -16.14432 -15.79828 -15.45222 -15.36438 -14.99279 -14.84532 -14.38090 -14.20554 -14.14085 -13.92302 -13.67558 -13.39062 -13.11687 -12.92597 -12.71956 -12.47017 -12.03867 -12.00493 -11.94576 -11.88162 -11.72473 -11.43577 -11.34746 -11.20155 -11.01308 -10.79236 -10.71139 -9.67352 -8.46797 -6.56243 1.21281 1.25197 1.28107 1.39996 1.68417 2.04322 2.12039 2.19986 2.88667 3.23060 3.58255 3.71941 3.75160 3.99842 4.07407 4.15453 4.18289 4.25425 4.39704 4.51030 4.55448 4.59207 4.69330 4.74765 4.87856 5.00743 5.02453 5.08437 5.09719 5.14723 5.33974 5.36837 5.41039 5.47294 5.69078 5.82010 6.01890 6.17631 6.51395 6.91659 6.92243 7.11877 7.61035 8.69261 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004602 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.745071 B = 6083.284781 C = 6536.296100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.193 3.807 4 H 0.040 0.960 5 C -0.537 4.537 6 H 0.040 0.960 7 C 0.033 3.967 8 N -0.927 5.927 9 Si 0.929 3.071 10 H -0.268 1.268 11 H -0.266 1.266 12 H -0.243 1.243 13 O -0.362 6.362 14 C 0.454 3.546 15 O -0.531 6.531 16 C -0.088 4.088 17 H 0.107 0.893 18 C -0.100 4.100 19 C -0.125 4.125 20 C 0.103 3.897 21 N -0.624 5.624 22 C 0.701 3.299 23 N -0.843 5.843 24 O -0.645 6.645 25 C 0.147 3.853 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.275 0.725 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.413 0.587 39 H 0.420 0.580 40 H 0.073 0.927 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.551 7.938 13.320 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.139 3.861 4 H 0.058 0.942 5 C -0.575 4.575 6 H 0.058 0.942 7 C -0.167 4.167 8 N -0.565 5.565 9 Si 0.751 3.249 10 H -0.193 1.193 11 H -0.191 1.191 12 H -0.167 1.167 13 O -0.278 6.278 14 C 0.298 3.702 15 O -0.421 6.421 16 C -0.109 4.109 17 H 0.125 0.875 18 C -0.137 4.137 19 C -0.162 4.162 20 C -0.019 4.019 21 N -0.361 5.361 22 C 0.400 3.600 23 N -0.415 5.415 24 O -0.527 6.527 25 C 0.022 3.978 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.248 0.752 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.960 7.433 12.823 25.671 hybrid contribution 0.479 0.159 -0.733 0.890 sum -20.482 7.592 12.090 24.966 Atomic orbital electron populations 1.21809 0.94789 1.01781 1.01165 1.22052 0.95965 0.96910 1.02155 1.20808 0.93744 0.90462 0.81054 0.94233 1.20971 0.89936 1.52735 0.93815 0.94166 1.25663 0.96180 0.93156 1.01708 1.69987 1.11519 1.49449 1.25552 0.86005 0.80342 0.79580 0.78963 1.19311 1.19110 1.16658 1.86613 1.36376 1.62945 1.41851 1.24059 0.79363 0.76023 0.90791 1.90570 1.55154 1.58859 1.37523 1.21508 1.01208 0.98572 0.89574 0.87472 1.21450 0.92317 1.00427 0.99555 1.22019 1.04053 0.97530 0.92646 1.22179 0.83782 0.95105 1.00800 1.47210 1.24713 1.57092 1.07126 1.16133 0.82137 0.80137 0.81583 1.42884 1.28820 1.55300 1.14528 1.90978 1.29879 1.47606 1.84245 1.21080 1.00480 0.93184 0.83027 0.93704 0.93456 0.90928 0.91495 0.92032 0.91511 0.91131 0.90586 0.91004 0.86741 0.89354 0.86762 0.75243 0.74630 0.90797 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.57 71.98 0.62 -4.49 16 2 C -0.13 -5.91 5.38 30.59 0.16 -5.75 16 3 C 0.19 9.85 1.78 29.85 0.05 9.90 16 4 H 0.04 2.07 4.50 -2.38 -0.01 2.06 16 5 C -0.54 -32.26 9.24 25.60 0.24 -32.02 16 6 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 7 C 0.03 1.96 5.47 84.65 0.46 2.42 16 8 N -0.93 -57.63 13.96 21.45 0.30 -57.33 16 9 Si 0.93 44.35 26.61 68.60 1.83 46.17 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.24 -11.01 6.35 99.48 0.63 -10.38 16 13 O -0.36 -17.12 9.74 -51.42 -0.50 -17.62 16 14 C 0.45 17.58 5.74 71.23 0.41 17.98 16 15 O -0.53 -21.79 13.12 21.96 0.29 -21.50 16 16 C -0.09 -2.47 2.78 -11.47 -0.03 -2.50 16 17 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 18 C -0.10 -1.98 4.46 30.62 0.14 -1.84 16 19 C -0.12 -1.34 6.10 30.82 0.19 -1.15 16 20 C 0.10 1.02 6.46 86.51 0.56 1.58 16 21 N -0.62 -12.86 2.97 -836.06 -2.48 -15.34 16 22 C 0.70 17.07 8.57 179.05 1.53 18.60 16 23 N -0.84 -10.59 8.79 -184.74 -1.62 -12.21 16 24 O -0.65 -23.71 16.62 -4.00 -0.07 -23.78 16 25 C 0.15 4.05 5.63 86.36 0.49 4.54 16 26 H 0.04 1.61 6.05 -2.39 -0.01 1.60 16 27 H 0.05 1.80 7.83 -2.39 -0.02 1.79 16 28 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.07 2.98 7.53 -2.39 -0.02 2.97 16 30 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.07 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.08 1.51 8.13 -2.38 -0.02 1.49 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.31 5.57 -2.39 -0.01 0.30 16 38 H 0.41 1.87 6.29 -92.71 -0.58 1.28 16 39 H 0.42 4.56 8.93 -92.70 -0.83 3.73 16 40 H 0.07 2.62 7.04 -2.39 -0.02 2.60 16 41 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -81.07 325.83 2.13 -78.94 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.43 Total: 15.40 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.82 Total: 7.28 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -3.80 Total: -84.88 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -0.28 Total: -62.90 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.83 Total: 46.17 kcal Total: -81.07 2.13 -78.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187939899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.542 kcal (2) G-P(sol) polarization free energy of solvation -81.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds