Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47449 * 2 1 4 4 C 1.53006 * 109.47318 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30304 * 126.33648 * 270.15910 * 5 4 3 7 7 N 1.28522 * 110.07385 * 180.30809 * 6 5 4 8 8 C 1.31291 * 109.85787 * 359.71685 * 7 6 5 9 9 S 1.76200 * 126.48325 * 179.97438 * 8 7 6 10 10 C 1.80996 * 100.00335 * 0.02957 * 9 8 7 11 11 H 1.09011 * 109.46939 * 304.99741 * 10 9 8 12 12 C 1.53003 * 109.47324 * 64.99388 * 10 9 8 13 13 C 1.52998 * 109.47306 * 185.00064 * 10 9 8 14 14 C 1.50703 * 109.47106 * 64.99771 * 13 10 9 15 15 H 1.07996 * 120.00079 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99754 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46675 * 90.00013 * 18 16 14 20 20 H 1.48496 * 109.47018 * 210.00096 * 18 16 14 21 21 H 1.48498 * 109.46908 * 330.00039 * 18 16 14 22 22 N 1.36533 * 107.02826 * 359.97438 * 8 7 6 23 23 N 1.36605 * 127.14037 * 180.02562 * 22 8 7 24 24 H 1.09002 * 109.47707 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46896 * 300.00167 * 1 2 3 26 26 H 1.09002 * 109.47252 * 59.99702 * 1 2 3 27 27 H 1.08999 * 109.46896 * 239.99832 * 2 1 3 28 28 H 1.09002 * 109.47252 * 120.00298 * 2 1 3 29 29 H 1.08999 * 109.47208 * 60.00023 * 3 2 1 30 30 H 1.09002 * 109.47137 * 300.00368 * 3 2 1 31 31 H 1.08999 * 109.46959 * 59.99875 * 4 3 2 32 32 H 1.08997 * 109.46888 * 300.00093 * 4 3 2 33 33 H 1.08998 * 109.46848 * 60.00571 * 12 10 9 34 34 H 1.08996 * 109.46940 * 180.02562 * 12 10 9 35 35 H 1.08996 * 109.47147 * 300.00239 * 12 10 9 36 36 H 1.08997 * 109.46794 * 184.99724 * 13 10 9 37 37 H 1.08996 * 109.47031 * 304.99475 * 13 10 9 38 38 H 0.96999 * 119.99426 * 179.97438 * 17 16 14 39 39 H 1.00896 * 111.00330 * 90.02165 * 23 22 8 40 40 H 1.00902 * 111.00023 * 213.98415 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8632 0.0013 6 7 4.3276 3.5924 -1.0481 7 7 4.7458 4.7530 -0.6877 8 6 4.7746 4.8295 0.6227 9 16 5.2772 6.2208 1.5801 10 6 5.6932 7.3808 0.2545 11 1 6.4220 6.9224 -0.4141 12 6 4.4286 7.7309 -0.5325 13 6 6.2866 8.6548 0.8592 14 6 7.5963 8.3296 1.5301 15 1 7.9680 7.3156 1.5259 16 6 8.3195 9.3264 2.1501 17 7 7.8666 10.5611 2.1555 18 14 9.9426 8.9232 2.9822 19 1 11.0502 9.0703 2.0041 20 1 10.1600 9.8527 4.1197 21 1 9.9077 7.5261 3.4843 22 7 4.3416 3.6271 1.1031 23 7 4.2103 3.2610 2.4126 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9286 0.8908 33 1 3.6999 8.1893 0.1360 34 1 4.6793 8.4291 -1.3310 35 1 4.0060 6.8233 -0.9633 36 1 6.4547 9.3874 0.0699 37 1 5.5939 9.0650 1.5941 38 1 8.3752 11.2623 2.5920 39 1 3.2893 3.4831 2.7596 40 1 4.4170 2.2812 2.5367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188319986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 68.499884 kcal Electronic energy + Delta-G solvation = -19900.034148 eV Core-core repulsion = 16877.238365 eV Total energy + Delta-G solvation = -3022.795783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.79130 -36.67875 -36.08530 -34.53410 -32.31757 -31.94605 -29.75054 -28.90754 -27.36618 -24.79125 -23.27229 -22.59741 -21.71767 -21.19739 -20.45998 -18.16652 -17.45603 -16.59394 -16.33602 -15.77298 -15.13450 -14.96856 -14.60990 -14.38468 -14.15111 -13.62067 -12.96676 -12.79331 -12.56024 -11.96868 -11.90071 -11.77950 -11.77145 -11.52112 -11.46760 -11.11621 -11.03050 -11.00937 -10.76790 -10.64821 -10.48154 -10.32937 -9.75363 -9.57291 -9.37317 -9.32284 -9.12691 -8.37717 -7.00311 -6.02766 -4.04822 1.59536 1.73938 2.37429 2.91517 2.96244 3.33966 3.40008 3.45096 3.88296 4.34036 4.46438 4.49690 4.55939 4.69438 4.89388 5.11521 5.18515 5.34674 5.35578 5.38710 5.48175 5.53780 5.70112 5.71156 5.79414 5.85086 5.89036 5.91970 6.03171 6.19820 6.36425 6.60748 6.66868 6.84647 7.43456 7.53254 7.58022 7.94671 8.31074 8.78344 9.00302 9.59525 11.08266 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.003437 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.485543 B = 8145.394558 C = 8520.310134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.028 4.028 5 C 0.131 3.869 6 N -0.273 5.273 7 N -0.297 5.297 8 C 0.194 3.806 9 S 0.044 5.956 10 C -0.064 4.064 11 H 0.091 0.909 12 C -0.147 4.147 13 C 0.038 3.962 14 C -0.522 4.522 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.271 1.271 22 N -0.315 5.315 23 N -0.581 5.581 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.362 0.638 40 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 -19.683 -0.586 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.068 4.068 5 C -0.141 4.141 6 N -0.113 5.113 7 N -0.142 5.142 8 C -0.179 4.179 9 S 0.274 5.726 10 C -0.194 4.194 11 H 0.109 0.891 12 C -0.206 4.206 13 C -0.001 4.001 14 C -0.560 4.560 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.196 1.196 22 N -0.099 5.099 23 N -0.212 5.212 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.180 0.820 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.496 -18.427 -0.633 22.274 hybrid contribution 0.039 -1.387 0.383 1.439 sum -12.458 -19.814 -0.251 23.406 Atomic orbital electron populations 1.21769 0.95569 1.01728 1.02031 1.21516 0.96195 0.96009 1.02333 1.21631 0.93313 0.97531 1.02964 1.19998 0.95959 0.86435 1.04402 1.25269 1.07061 0.98145 0.83586 1.73902 1.14695 0.99139 1.23570 1.74851 1.21044 1.12133 1.06175 1.27643 1.02495 0.92614 0.95118 1.86295 1.77490 0.99776 1.09027 1.23703 0.99926 0.99259 0.96497 0.89108 1.22124 0.96660 1.01913 0.99948 1.19088 0.95693 0.88852 0.96485 1.21273 1.04990 0.95062 1.34718 0.91819 1.24984 0.97986 0.94959 0.96211 1.69957 1.38751 1.00465 1.44131 0.86584 0.83926 0.78419 0.79136 1.20651 1.21254 1.19604 1.45033 1.51209 1.11887 1.01789 1.59541 1.36456 1.27275 0.97905 0.92595 0.92783 0.92528 0.91469 0.91928 0.92380 0.90733 0.88016 0.90597 0.92704 0.91978 0.91852 0.94146 0.95498 0.92901 0.81986 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.69 5.93 -26.74 -0.16 -0.85 16 3 C -0.12 -0.86 5.20 -26.73 -0.14 -1.00 16 4 C -0.03 -0.24 5.69 -27.88 -0.16 -0.40 16 5 C 0.13 1.80 7.38 -154.00 -1.14 0.67 16 6 N -0.27 -4.84 12.18 32.99 0.40 -4.44 16 7 N -0.30 -5.83 9.75 30.68 0.30 -5.54 16 8 C 0.19 3.57 7.88 -88.34 -0.70 2.87 16 9 S 0.04 0.87 21.02 -107.50 -2.26 -1.39 16 10 C -0.06 -1.38 2.29 -26.73 -0.06 -1.44 16 11 H 0.09 2.04 8.14 -51.91 -0.42 1.62 16 12 C -0.15 -2.77 9.01 37.16 0.33 -2.43 16 13 C 0.04 0.95 4.44 -27.88 -0.12 0.82 16 14 C -0.52 -14.41 8.53 -34.44 -0.29 -14.71 16 15 H 0.06 1.75 7.60 -52.49 -0.40 1.35 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 N -0.31 -4.55 3.81 -9.93 -0.04 -4.59 16 23 N -0.58 -6.04 10.41 60.35 0.63 -5.41 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.46 7.40 -51.93 -0.38 0.08 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.19 5.91 -51.93 -0.31 0.88 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.36 2.93 9.21 -181.37 -1.67 1.26 16 40 H 0.37 2.62 8.26 -181.36 -1.50 1.12 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -32.74 345.57 -11.10 -43.84 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.89 Total: -3.35 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.16 Total: -15.35 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 2.03 Total: -45.59 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.26 Total: -1.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.74 -11.10 -43.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188319986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.337 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds