Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47449 * 2 1 4 4 C 1.53006 * 109.47318 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47242 * 180.02562 * 4 3 2 6 6 N 1.30304 * 126.33648 * 270.15910 * 5 4 3 7 7 N 1.28522 * 110.07385 * 180.30809 * 6 5 4 8 8 C 1.31291 * 109.85787 * 359.71685 * 7 6 5 9 9 S 1.76200 * 126.48325 * 179.97438 * 8 7 6 10 10 C 1.80996 * 100.00335 * 0.02957 * 9 8 7 11 11 H 1.09011 * 109.46939 * 304.99741 * 10 9 8 12 12 C 1.53003 * 109.47324 * 64.99388 * 10 9 8 13 13 C 1.52998 * 109.47306 * 185.00064 * 10 9 8 14 14 C 1.50703 * 109.47106 * 64.99771 * 13 10 9 15 15 H 1.07996 * 120.00079 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99754 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46675 * 90.00013 * 18 16 14 20 20 H 1.48496 * 109.47018 * 210.00096 * 18 16 14 21 21 H 1.48498 * 109.46908 * 330.00039 * 18 16 14 22 22 N 1.36533 * 107.02826 * 359.97438 * 8 7 6 23 23 N 1.36605 * 127.14037 * 180.02562 * 22 8 7 24 24 H 1.09002 * 109.47707 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46896 * 300.00167 * 1 2 3 26 26 H 1.09002 * 109.47252 * 59.99702 * 1 2 3 27 27 H 1.08999 * 109.46896 * 239.99832 * 2 1 3 28 28 H 1.09002 * 109.47252 * 120.00298 * 2 1 3 29 29 H 1.08999 * 109.47208 * 60.00023 * 3 2 1 30 30 H 1.09002 * 109.47137 * 300.00368 * 3 2 1 31 31 H 1.08999 * 109.46959 * 59.99875 * 4 3 2 32 32 H 1.08997 * 109.46888 * 300.00093 * 4 3 2 33 33 H 1.08998 * 109.46848 * 60.00571 * 12 10 9 34 34 H 1.08996 * 109.46940 * 180.02562 * 12 10 9 35 35 H 1.08996 * 109.47147 * 300.00239 * 12 10 9 36 36 H 1.08997 * 109.46794 * 184.99724 * 13 10 9 37 37 H 1.08996 * 109.47031 * 304.99475 * 13 10 9 38 38 H 0.96999 * 119.99426 * 179.97438 * 17 16 14 39 39 H 1.00896 * 111.00330 * 90.02165 * 23 22 8 40 40 H 1.00902 * 111.00023 * 213.98415 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8632 0.0013 6 7 4.3276 3.5924 -1.0481 7 7 4.7458 4.7530 -0.6877 8 6 4.7746 4.8295 0.6227 9 16 5.2772 6.2208 1.5801 10 6 5.6932 7.3808 0.2545 11 1 6.4220 6.9224 -0.4141 12 6 4.4286 7.7309 -0.5325 13 6 6.2866 8.6548 0.8592 14 6 7.5963 8.3296 1.5301 15 1 7.9680 7.3156 1.5259 16 6 8.3195 9.3264 2.1501 17 7 7.8666 10.5611 2.1555 18 14 9.9426 8.9232 2.9822 19 1 11.0502 9.0703 2.0041 20 1 10.1600 9.8527 4.1197 21 1 9.9077 7.5261 3.4843 22 7 4.3416 3.6271 1.1031 23 7 4.2103 3.2610 2.4126 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9286 0.8908 33 1 3.6999 8.1893 0.1360 34 1 4.6793 8.4291 -1.3310 35 1 4.0060 6.8233 -0.9633 36 1 6.4547 9.3874 0.0699 37 1 5.5939 9.0650 1.5941 38 1 8.3752 11.2623 2.5920 39 1 3.2893 3.4831 2.7596 40 1 4.4170 2.2812 2.5367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188319986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 49.737632 kcal Electronic energy + Delta-G solvation = -19900.847740 eV Core-core repulsion = 16877.238365 eV Total energy + Delta-G solvation = -3023.609375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.03324 -37.67445 -36.80090 -36.42827 -34.09760 -33.03520 -30.85246 -29.97536 -29.20038 -25.54400 -25.25403 -23.91367 -22.61799 -22.13664 -21.91765 -19.34020 -18.49920 -18.46347 -17.89044 -16.63571 -16.51574 -16.28802 -16.16068 -15.57385 -14.80539 -14.75478 -14.27122 -14.18035 -13.70661 -13.41501 -13.36874 -13.24791 -12.82135 -12.68181 -12.56199 -12.40058 -12.32311 -12.28297 -12.18260 -11.90144 -11.68640 -11.51704 -11.49089 -11.21456 -10.99831 -10.90483 -10.53023 -10.47061 -8.52010 -8.18526 -6.27432 0.18302 0.53030 1.22878 1.34726 1.42725 1.42944 1.54764 1.62306 2.43393 3.03412 3.16456 3.54118 3.90773 3.93429 4.09409 4.11768 4.16631 4.23308 4.36692 4.52089 4.55145 4.57843 4.68018 4.79949 4.91573 4.92287 4.98086 5.02688 5.05495 5.24031 5.25393 5.34205 5.40700 5.45147 5.51241 5.70317 5.78791 6.18671 6.43528 6.84246 7.40639 7.50151 8.93026 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.003437 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.485543 B = 8145.394558 C = 8520.310134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.027 4.027 5 C 0.158 3.842 6 N -0.316 5.316 7 N -0.323 5.323 8 C 0.175 3.825 9 S 0.038 5.962 10 C -0.058 4.058 11 H 0.074 0.926 12 C -0.136 4.136 13 C 0.046 3.954 14 C -0.534 4.534 15 H 0.062 0.938 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.264 1.264 22 N -0.309 5.309 23 N -0.583 5.583 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.019 0.981 37 H 0.009 0.991 38 H 0.264 0.736 39 H 0.378 0.622 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 -22.451 0.530 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.148 4.148 4 C -0.067 4.067 5 C -0.114 4.114 6 N -0.156 5.156 7 N -0.168 5.168 8 C -0.201 4.201 9 S 0.267 5.733 10 C -0.188 4.188 11 H 0.093 0.907 12 C -0.195 4.195 13 C 0.007 3.993 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.206 1.206 21 H -0.188 1.188 22 N -0.091 5.091 23 N -0.219 5.219 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.198 0.802 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.811 -21.229 0.480 24.799 hybrid contribution 0.036 -0.685 0.037 0.687 sum -12.775 -21.914 0.517 25.371 Atomic orbital electron populations 1.21789 0.95707 1.02188 1.01655 1.21483 0.96008 0.94621 1.03365 1.21566 0.92255 0.98801 1.02176 1.20341 0.96638 0.83207 1.06523 1.26242 1.03458 0.99229 0.82424 1.73844 1.17083 0.99276 1.25408 1.74748 1.21494 1.13496 1.07060 1.27191 1.04405 0.93501 0.94973 1.86029 1.78542 1.00505 1.08220 1.23385 1.00529 0.98068 0.96811 0.90710 1.22018 0.95542 1.02107 0.99862 1.18866 0.94897 0.90231 0.95265 1.21559 1.05880 0.94998 1.34749 0.92024 1.25824 1.01525 0.94801 0.96912 1.70069 1.40286 1.01399 1.45124 0.85565 0.79605 0.78487 0.78199 1.20051 1.20625 1.18839 1.45012 1.49884 1.10685 1.03486 1.59576 1.37857 1.29035 0.95419 0.91733 0.92741 0.93402 0.91137 0.90186 0.92015 0.92816 0.87279 0.87060 0.91963 0.91459 0.91651 0.96309 0.97298 0.92705 0.80157 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -0.95 5.93 30.59 0.18 -0.77 16 3 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 4 C -0.03 -0.38 5.69 29.85 0.17 -0.21 16 5 C 0.16 4.07 7.38 137.63 1.02 5.08 16 6 N -0.32 -11.06 12.18 -49.53 -0.60 -11.66 16 7 N -0.32 -12.74 9.75 -56.85 -0.55 -13.29 16 8 C 0.17 6.34 7.88 179.55 1.42 7.75 16 9 S 0.04 1.50 21.02 -56.49 -1.19 0.31 16 10 C -0.06 -2.56 2.29 30.59 0.07 -2.49 16 11 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 12 C -0.14 -5.21 9.01 71.98 0.65 -4.56 16 13 C 0.05 2.40 4.44 29.85 0.13 2.54 16 14 C -0.53 -29.99 8.53 25.60 0.22 -29.77 16 15 H 0.06 3.42 7.60 -2.91 -0.02 3.40 16 16 C 0.01 0.44 5.46 84.65 0.46 0.90 16 17 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 18 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 N -0.31 -8.35 3.81 -185.32 -0.71 -9.06 16 23 N -0.58 -10.47 10.41 37.02 0.39 -10.09 16 24 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 0.81 7.40 -2.39 -0.02 0.79 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.49 5.91 -2.39 -0.01 2.47 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.38 4.98 9.21 -210.56 -1.94 3.04 16 40 H 0.39 4.01 8.26 -210.55 -1.74 2.27 16 Total: -1.00 -72.05 345.57 2.20 -69.85 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.63 Total: 6.14 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 5.19 Total: -23.38 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -1.19 Total: -99.41 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.19 Total: 0.31 kcal Total: -72.05 2.20 -69.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188319986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.584 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds