Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47153 * 2 1 4 4 C 1.34236 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.50692 * 119.99791 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47566 * 60.00133 * 6 4 3 8 8 C 1.53001 * 109.47222 * 299.99837 * 6 4 3 9 9 N 1.46901 * 109.46909 * 180.02562 * 6 4 3 10 10 C 1.46902 * 111.00032 * 190.58728 * 9 6 4 11 11 C 1.50705 * 109.46851 * 161.90315 * 10 9 6 12 12 O 1.21284 * 120.00027 * 356.94841 * 11 10 9 13 13 N 1.34779 * 119.99308 * 176.95530 * 11 10 9 14 14 C 1.37098 * 119.99650 * 179.97438 * 13 11 10 15 15 H 1.08007 * 119.99536 * 359.97438 * 14 13 11 16 16 C 1.38939 * 120.00425 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00502 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47439 * 119.99782 * 18 16 14 21 21 H 1.48503 * 109.47418 * 239.99873 * 18 16 14 22 22 C 1.46904 * 110.99809 * 66.63444 * 9 6 4 23 23 C 1.53003 * 117.49712 * 140.62420 * 22 9 6 24 24 C 1.52995 * 117.50118 * 72.00135 * 22 9 6 25 25 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47173 * 299.99200 * 1 2 3 27 27 H 1.08998 * 109.47398 * 59.99415 * 1 2 3 28 28 H 1.09003 * 109.47173 * 240.00800 * 2 1 3 29 29 H 1.08998 * 109.47398 * 120.00585 * 2 1 3 30 30 H 1.09001 * 109.47558 * 307.53311 * 8 6 4 31 31 H 1.08998 * 109.46671 * 67.53574 * 8 6 4 32 32 H 1.09004 * 109.47144 * 187.52640 * 8 6 4 33 33 H 1.09004 * 109.46701 * 281.89782 * 10 9 6 34 34 H 1.08993 * 109.47442 * 41.89886 * 10 9 6 35 35 H 0.96995 * 120.00457 * 359.97438 * 13 11 10 36 36 H 0.97005 * 120.00192 * 180.02562 * 17 16 14 37 37 H 1.08996 * 115.54837 * 286.32902 * 22 9 6 38 38 H 1.08996 * 117.50069 * 359.97438 * 23 22 9 39 39 H 1.09002 * 117.49459 * 145.02087 * 23 22 9 40 40 H 1.08997 * 117.50224 * 214.97901 * 24 22 9 41 41 H 1.09005 * 117.49847 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9206 2.9374 0.0000 7 1 3.5851 3.4691 0.8905 8 6 3.4485 3.6851 -1.2486 9 7 5.3876 2.8606 -0.0014 10 6 5.9841 4.1791 0.2511 11 6 7.4184 4.0076 0.6808 12 8 7.8804 2.8951 0.8216 13 7 8.1876 5.0906 0.9086 14 6 9.4922 4.9347 1.3000 15 1 9.9034 3.9440 1.4261 16 6 10.2854 6.0511 1.5344 17 7 9.7852 7.2565 1.3805 18 14 12.0628 5.8386 2.0684 19 1 12.3799 4.3914 2.1688 20 1 12.9592 6.4741 1.0694 21 1 12.2623 6.4816 3.3921 22 6 5.8837 2.2908 -1.2613 23 6 7.1496 2.9038 -1.8637 24 6 5.7897 3.1615 -2.5158 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.6662 3.0878 -2.1339 31 1 2.3745 3.8596 -1.1831 32 1 3.9682 4.6407 -1.3181 33 1 5.9468 4.7753 -0.6607 34 1 5.4267 4.6852 1.0392 35 1 7.8182 5.9804 0.7957 36 1 10.3391 8.0360 1.5438 37 1 5.7376 1.2174 -1.3815 38 1 7.6139 3.7301 -1.3255 39 1 7.8365 2.2335 -2.3804 40 1 5.5820 2.6609 -3.4615 41 1 5.3600 4.1573 -2.4063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190841852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = -67.519390 kcal Electronic energy + Delta-G solvation = -23333.792790 eV Core-core repulsion = 19830.053147 eV Total energy + Delta-G solvation = -3503.739643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80451 -39.45861 -37.39233 -36.38971 -34.05764 -33.83963 -31.93779 -31.21378 -30.37135 -27.11318 -25.14552 -24.20440 -22.96499 -21.96716 -21.32909 -20.02280 -18.81452 -17.83151 -17.50046 -16.71627 -16.59664 -16.19591 -15.65485 -14.95377 -14.51156 -14.38726 -13.96611 -13.80592 -13.55963 -13.28790 -13.03209 -12.99614 -12.52272 -12.37057 -12.14192 -12.07560 -11.73001 -11.50782 -11.42925 -11.17418 -11.01299 -10.82156 -10.61267 -10.40769 -10.31455 -10.19338 -10.09463 -9.73687 -9.41985 -8.41811 -7.91882 -7.82769 -6.38227 -3.78574 2.32021 2.50015 3.18794 3.29369 3.36867 3.82079 3.93798 4.18239 4.26383 4.59051 4.72223 4.79904 4.86114 4.97291 5.07238 5.12433 5.16972 5.24696 5.31059 5.36529 5.39640 5.53708 5.55944 5.59178 5.70220 5.73223 5.83762 5.89432 6.03511 6.24689 6.33517 6.39591 6.44786 6.63334 7.12852 7.23287 7.59204 7.89405 8.09861 8.66336 9.22812 9.57882 10.10915 10.79769 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033665 B = 0.003617 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.523337 B = 7738.938305 C = 7832.480855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.468 3.532 5 O -0.482 6.482 6 C 0.095 3.905 7 H 0.119 0.881 8 C -0.185 4.185 9 N -0.466 5.466 10 C 0.038 3.962 11 C 0.448 3.552 12 O -0.563 6.563 13 N -0.569 5.569 14 C -0.294 4.294 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.927 3.073 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.040 3.960 23 C -0.162 4.162 24 C -0.239 4.239 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.391 0.609 36 H 0.270 0.730 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -5.965 -6.103 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.308 3.692 5 O -0.366 6.366 6 C -0.015 4.015 7 H 0.136 0.864 8 C -0.243 4.243 9 N -0.188 5.188 10 C -0.093 4.093 11 C 0.233 3.767 12 O -0.445 6.445 13 N -0.208 5.208 14 C -0.424 4.424 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.755 3.245 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.069 4.069 23 C -0.199 4.199 24 C -0.278 4.278 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.224 0.776 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.958 -7.211 -5.558 19.247 hybrid contribution 0.490 0.950 -0.385 1.137 sum -16.467 -6.261 -5.943 18.593 Atomic orbital electron populations 1.21794 0.92785 1.02811 1.03438 1.22974 0.95128 0.80536 1.02593 1.86483 1.24784 1.32109 1.84596 1.23502 0.80253 0.92561 0.72858 1.90674 1.60037 1.42616 1.43287 1.21288 0.89300 0.89691 1.01174 0.86359 1.22686 1.02370 1.01087 0.98196 1.61354 1.01538 1.23135 1.32753 1.22041 0.96879 0.89378 1.01033 1.19503 0.86769 0.85817 0.84637 1.90587 1.73760 1.24390 1.55740 1.41869 1.11323 1.07083 1.60483 1.19730 0.86116 0.94807 1.41737 0.87883 1.25226 1.00337 0.94641 0.97789 1.69621 1.37395 0.97642 1.49884 0.85826 0.81991 0.78654 0.78045 1.19238 1.20839 1.20826 1.22644 1.01739 0.97759 0.84778 1.23341 0.90538 1.04010 1.02006 1.23822 1.03284 1.02314 0.98422 0.90399 0.91484 0.91572 0.91407 0.91247 0.90652 0.91144 0.90820 0.92410 0.89125 0.77623 0.92027 0.85443 0.87156 0.88870 0.89116 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.15 0.38 -0.63 16 2 C 0.06 0.60 6.19 37.15 0.23 0.83 16 3 O -0.36 -4.36 10.15 -39.27 -0.40 -4.76 16 4 C 0.47 6.77 7.02 36.00 0.25 7.02 16 5 O -0.48 -8.58 14.36 -18.75 -0.27 -8.85 16 6 C 0.10 1.28 2.82 -68.87 -0.19 1.09 16 7 H 0.12 1.39 7.83 -51.93 -0.41 0.98 16 8 C -0.18 -1.97 7.40 37.16 0.28 -1.69 16 9 N -0.47 -8.09 4.01 -221.53 -0.89 -8.98 16 10 C 0.04 0.66 4.41 -4.97 -0.02 0.64 16 11 C 0.45 10.47 5.23 -10.98 -0.06 10.41 16 12 O -0.56 -15.37 14.58 5.55 0.08 -15.29 16 13 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 14 C -0.29 -8.16 9.68 -14.94 -0.14 -8.31 16 15 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 18 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.04 0.68 4.68 -67.71 -0.32 0.37 16 23 C -0.16 -2.91 8.47 -26.73 -0.23 -3.14 16 24 C -0.24 -3.38 7.20 -26.73 -0.19 -3.57 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.07 0.84 5.78 -51.93 -0.30 0.54 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.76 5.78 -51.93 -0.30 0.45 16 33 H 0.06 0.91 5.16 -51.93 -0.27 0.65 16 34 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 35 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.13 2.34 6.75 -51.93 -0.35 1.99 16 38 H 0.11 2.30 4.59 -51.93 -0.24 2.06 16 39 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.25 4.89 -51.93 -0.25 1.00 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -32.77 328.22 -6.73 -39.50 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.73 Total: 11.82 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.11 Total: 3.49 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.22 Total: -47.02 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.59 Total: -28.90 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.77 -6.73 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190841852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.021 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds