Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47153 * 2 1 4 4 C 1.34236 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.50692 * 119.99791 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47566 * 60.00133 * 6 4 3 8 8 C 1.53001 * 109.47222 * 299.99837 * 6 4 3 9 9 N 1.46901 * 109.46909 * 180.02562 * 6 4 3 10 10 C 1.46902 * 111.00032 * 190.58728 * 9 6 4 11 11 C 1.50705 * 109.46851 * 161.90315 * 10 9 6 12 12 O 1.21284 * 120.00027 * 356.94841 * 11 10 9 13 13 N 1.34779 * 119.99308 * 176.95530 * 11 10 9 14 14 C 1.37098 * 119.99650 * 179.97438 * 13 11 10 15 15 H 1.08007 * 119.99536 * 359.97438 * 14 13 11 16 16 C 1.38939 * 120.00425 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00502 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47439 * 119.99782 * 18 16 14 21 21 H 1.48503 * 109.47418 * 239.99873 * 18 16 14 22 22 C 1.46904 * 110.99809 * 66.63444 * 9 6 4 23 23 C 1.53003 * 117.49712 * 140.62420 * 22 9 6 24 24 C 1.52995 * 117.50118 * 72.00135 * 22 9 6 25 25 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47173 * 299.99200 * 1 2 3 27 27 H 1.08998 * 109.47398 * 59.99415 * 1 2 3 28 28 H 1.09003 * 109.47173 * 240.00800 * 2 1 3 29 29 H 1.08998 * 109.47398 * 120.00585 * 2 1 3 30 30 H 1.09001 * 109.47558 * 307.53311 * 8 6 4 31 31 H 1.08998 * 109.46671 * 67.53574 * 8 6 4 32 32 H 1.09004 * 109.47144 * 187.52640 * 8 6 4 33 33 H 1.09004 * 109.46701 * 281.89782 * 10 9 6 34 34 H 1.08993 * 109.47442 * 41.89886 * 10 9 6 35 35 H 0.96995 * 120.00457 * 359.97438 * 13 11 10 36 36 H 0.97005 * 120.00192 * 180.02562 * 17 16 14 37 37 H 1.08996 * 115.54837 * 286.32902 * 22 9 6 38 38 H 1.08996 * 117.50069 * 359.97438 * 23 22 9 39 39 H 1.09002 * 117.49459 * 145.02087 * 23 22 9 40 40 H 1.08997 * 117.50224 * 214.97901 * 24 22 9 41 41 H 1.09005 * 117.49847 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9206 2.9374 0.0000 7 1 3.5851 3.4691 0.8905 8 6 3.4485 3.6851 -1.2486 9 7 5.3876 2.8606 -0.0014 10 6 5.9841 4.1791 0.2511 11 6 7.4184 4.0076 0.6808 12 8 7.8804 2.8951 0.8216 13 7 8.1876 5.0906 0.9086 14 6 9.4922 4.9347 1.3000 15 1 9.9034 3.9440 1.4261 16 6 10.2854 6.0511 1.5344 17 7 9.7852 7.2565 1.3805 18 14 12.0628 5.8386 2.0684 19 1 12.3799 4.3914 2.1688 20 1 12.9592 6.4741 1.0694 21 1 12.2623 6.4816 3.3921 22 6 5.8837 2.2908 -1.2613 23 6 7.1496 2.9038 -1.8637 24 6 5.7897 3.1615 -2.5158 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.6662 3.0878 -2.1339 31 1 2.3745 3.8596 -1.1831 32 1 3.9682 4.6407 -1.3181 33 1 5.9468 4.7753 -0.6607 34 1 5.4267 4.6852 1.0392 35 1 7.8182 5.9804 0.7957 36 1 10.3391 8.0360 1.5438 37 1 5.7376 1.2174 -1.3815 38 1 7.6139 3.7301 -1.3255 39 1 7.8365 2.2335 -2.3804 40 1 5.5820 2.6609 -3.4615 41 1 5.3600 4.1573 -2.4063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190841852.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = -90.747215 kcal Electronic energy + Delta-G solvation = -23334.800025 eV Core-core repulsion = 19830.053147 eV Total energy + Delta-G solvation = -3504.746877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.97843 -40.82015 -39.05067 -37.51285 -35.86096 -35.25010 -33.24198 -32.71360 -31.53567 -28.56318 -26.53634 -25.69910 -23.80562 -23.19284 -22.56269 -21.42373 -20.47687 -19.70183 -18.70881 -17.98740 -17.72140 -17.59607 -16.92697 -16.42250 -16.27866 -15.62980 -15.41554 -15.19572 -14.94815 -14.39589 -14.18725 -14.09710 -13.58013 -13.57544 -13.40838 -13.29509 -13.00907 -12.90890 -12.61954 -12.47548 -12.38746 -12.35724 -12.12012 -12.05247 -11.66325 -11.50453 -11.46016 -11.21634 -10.97073 -10.26403 -9.94666 -9.15293 -8.43188 -5.90517 1.22331 1.36956 1.41811 1.50378 1.56536 2.10789 2.30157 2.64448 2.91324 3.23051 3.35948 3.64998 3.86939 3.90944 4.01308 4.02411 4.04310 4.12624 4.18228 4.29841 4.34684 4.37929 4.53539 4.67909 4.74609 4.81815 4.89365 4.95675 4.96730 5.13813 5.17289 5.20556 5.24161 5.44729 5.47968 5.81948 5.98414 6.08665 6.66297 6.82788 7.18758 7.61881 8.20041 8.74500 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033665 B = 0.003617 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.523337 B = 7738.938305 C = 7832.480855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.470 3.530 5 O -0.525 6.525 6 C 0.093 3.907 7 H 0.140 0.860 8 C -0.177 4.177 9 N -0.494 5.494 10 C 0.052 3.948 11 C 0.449 3.551 12 O -0.609 6.609 13 N -0.577 5.577 14 C -0.325 4.325 15 H 0.074 0.926 16 C -0.012 4.012 17 N -0.920 5.920 18 Si 0.987 3.013 19 H -0.277 1.277 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.031 3.969 23 C -0.193 4.193 24 C -0.192 4.192 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.396 0.604 36 H 0.276 0.724 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.834 -4.768 -6.808 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.313 3.687 5 O -0.412 6.412 6 C -0.016 4.016 7 H 0.157 0.843 8 C -0.235 4.235 9 N -0.217 5.217 10 C -0.078 4.078 11 C 0.236 3.764 12 O -0.493 6.493 13 N -0.216 5.216 14 C -0.455 4.455 15 H 0.092 0.908 16 C -0.211 4.211 17 N -0.562 5.562 18 Si 0.812 3.188 19 H -0.202 1.202 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.078 4.078 23 C -0.231 4.231 24 C -0.230 4.230 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.125 -5.982 -6.272 20.998 hybrid contribution 1.071 0.481 -0.162 1.185 sum -18.055 -5.501 -6.434 19.940 Atomic orbital electron populations 1.21804 0.89993 1.04300 1.03901 1.23261 0.97241 0.79409 1.02179 1.86482 1.23310 1.33443 1.83911 1.23787 0.80718 0.92579 0.71649 1.90667 1.61120 1.44002 1.45459 1.21462 0.86769 0.89645 1.03728 0.84276 1.22640 1.04031 1.00725 0.96147 1.61131 1.04154 1.23013 1.33403 1.21869 0.92835 0.90270 1.02852 1.20527 0.88860 0.84554 0.82421 1.90555 1.75387 1.26156 1.57252 1.41887 1.10816 1.07786 1.61105 1.19604 0.87965 0.94025 1.43912 0.90773 1.25924 1.03752 0.94177 0.97290 1.69669 1.38679 0.98025 1.49799 0.84949 0.77584 0.78047 0.78233 1.20184 1.19634 1.19656 1.22482 1.01323 0.97485 0.86478 1.23226 0.92055 1.03714 1.04083 1.23884 0.98737 1.02613 0.97807 0.88422 0.91173 0.90878 0.91610 0.92066 0.91089 0.88670 0.89792 0.89989 0.86284 0.77031 0.91431 0.87270 0.90113 0.89606 0.86763 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 10.29 71.98 0.74 -0.82 16 2 C 0.05 0.97 6.19 71.98 0.45 1.41 16 3 O -0.35 -7.91 10.15 -51.48 -0.52 -8.43 16 4 C 0.47 13.09 7.02 71.23 0.50 13.59 16 5 O -0.52 -18.93 14.36 21.96 0.32 -18.61 16 6 C 0.09 2.28 2.82 44.17 0.12 2.40 16 7 H 0.14 2.82 7.83 -2.39 -0.02 2.80 16 8 C -0.18 -3.08 7.40 71.98 0.53 -2.55 16 9 N -0.49 -16.72 4.01 -854.78 -3.43 -20.15 16 10 C 0.05 1.77 4.41 85.56 0.38 2.14 16 11 C 0.45 21.41 5.23 87.66 0.46 21.86 16 12 O -0.61 -34.70 14.58 -3.04 -0.04 -34.75 16 13 N -0.58 -29.43 5.29 -306.99 -1.62 -31.05 16 14 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 15 H 0.07 4.60 7.16 -2.91 -0.02 4.58 16 16 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 17 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 18 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 C 0.03 1.07 4.68 44.91 0.21 1.28 16 23 C -0.19 -7.07 8.47 30.60 0.26 -6.81 16 24 C -0.19 -4.99 7.20 30.59 0.22 -4.77 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 29 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.07 1.31 5.78 -2.39 -0.01 1.30 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.32 5.78 -2.38 -0.01 1.31 16 33 H 0.08 2.39 5.16 -2.39 -0.01 2.37 16 34 H 0.12 3.35 7.76 -2.39 -0.02 3.33 16 35 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 36 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 37 H 0.11 4.12 6.75 -2.39 -0.02 4.11 16 38 H 0.08 3.45 4.59 -2.39 -0.01 3.44 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.12 2.57 4.89 -2.38 -0.01 2.56 16 Total: -1.00 -74.11 328.22 2.49 -71.62 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.33 Total: 35.16 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.15 Total: 9.78 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.77 Total: -100.46 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -0.25 Total: -61.79 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -74.11 2.49 -71.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190841852.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.124 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds