Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46810 * 180.02562 * 10 9 7 12 12 C 1.81398 * 103.00088 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.54120 * 57.13506 * 13 12 11 15 15 C 1.55011 * 110.61110 * 179.97438 * 13 12 11 16 16 C 1.54862 * 102.09805 * 155.41061 * 15 13 12 17 17 C 1.53900 * 104.10002 * 339.15104 * 16 15 13 18 18 C 1.52764 * 109.70676 * 238.56937 * 17 16 15 19 19 C 1.53041 * 109.48246 * 179.86917 * 18 17 16 20 20 C 1.52997 * 109.45431 * 59.53087 * 19 18 17 21 21 C 1.53002 * 109.52566 * 299.74879 * 20 19 18 22 22 C 1.52772 * 109.67523 * 117.43447 * 17 16 15 23 23 O 1.43518 * 107.52833 * 358.02483 * 17 16 15 24 24 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.09002 * 109.46881 * 299.99990 * 12 11 10 30 30 H 1.09000 * 109.46946 * 60.00038 * 12 11 10 31 31 H 1.09001 * 110.91263 * 273.60940 * 15 13 12 32 32 H 1.09005 * 110.90973 * 37.17754 * 15 13 12 33 33 H 1.08993 * 110.50521 * 97.80684 * 16 15 13 34 34 H 1.09005 * 110.50653 * 220.36042 * 16 15 13 35 35 H 1.09007 * 109.46789 * 299.87460 * 18 17 16 36 36 H 1.09002 * 109.46983 * 59.85897 * 18 17 16 37 37 H 1.08999 * 109.47188 * 299.53599 * 19 18 17 38 38 H 1.09003 * 109.47455 * 179.52887 * 19 18 17 39 39 H 1.09000 * 109.46175 * 179.73577 * 20 19 18 40 40 H 1.08999 * 109.46131 * 59.76719 * 20 19 18 41 41 H 1.09004 * 109.47684 * 300.27473 * 21 20 19 42 42 H 1.08997 * 109.47702 * 180.25278 * 21 20 19 43 43 H 1.09003 * 109.46736 * 300.16608 * 22 17 16 44 44 H 1.08997 * 109.47550 * 60.16806 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3382 -5.2331 0.0034 12 6 2.6649 -6.4702 0.0038 13 6 2.0541 -7.8731 0.0050 14 1 1.3932 -8.0032 -0.8520 15 6 3.1665 -8.9526 0.0047 16 6 2.4410 -10.1664 0.6360 17 6 1.2558 -9.5422 1.3938 18 6 1.3394 -9.9105 2.8741 19 6 0.1607 -9.2847 3.6231 20 6 -1.1518 -9.8031 3.0320 21 6 -1.2332 -9.4197 1.5530 22 6 -0.0580 -10.0463 0.7990 23 8 1.3458 -8.1182 1.2396 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5576 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 3.2810 -6.3425 -0.8863 30 1 3.2811 -6.3419 0.8937 31 1 3.4895 -9.1781 -1.0116 32 1 4.0111 -8.6410 0.6192 33 1 2.0840 -10.8436 -0.1398 34 1 3.1032 -10.6913 1.3245 35 1 1.3038 -10.9947 2.9813 36 1 2.2746 -9.5350 3.2896 37 1 0.2010 -8.2001 3.5228 38 1 0.2159 -9.5544 4.6778 39 1 -1.9914 -9.3611 3.5685 40 1 -1.1900 -10.8882 3.1285 41 1 -1.1904 -8.3349 1.4559 42 1 -2.1705 -9.7855 1.1338 43 1 -0.1111 -9.7671 -0.2533 44 1 -0.1053 -11.1315 0.8898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191025468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = -86.945281 kcal Electronic energy + Delta-G solvation = -20528.030327 eV Core-core repulsion = 17569.741529 eV Total energy + Delta-G solvation = -2958.288799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50630 -36.74640 -33.63358 -32.35412 -31.91605 -30.90574 -30.80312 -28.30605 -25.26210 -23.98328 -22.91407 -21.67213 -21.02688 -20.72493 -19.44616 -16.66220 -16.47428 -16.04396 -15.53390 -14.90250 -14.76792 -14.46931 -14.19453 -13.95477 -13.76107 -13.51873 -13.12036 -13.00378 -12.54497 -12.30919 -12.23199 -12.12908 -11.85561 -11.57920 -11.43463 -11.19204 -11.11001 -11.05538 -11.01298 -10.56837 -10.49669 -10.38346 -10.15370 -10.10160 -9.60741 -9.50245 -9.31512 -8.97401 -8.39012 -6.99270 -6.02589 -4.06901 2.24954 3.30247 3.33446 3.38274 3.41938 3.71806 4.34718 4.44461 4.47360 4.57236 4.75388 4.77947 4.89750 5.06534 5.08835 5.22624 5.25215 5.32862 5.33664 5.41060 5.42542 5.51930 5.54649 5.57181 5.63832 5.73201 5.77946 5.85940 5.90039 6.00995 6.06032 6.09945 6.17458 6.22256 6.24906 6.25071 6.46237 6.79610 7.03598 7.61736 7.71178 7.94449 8.31877 8.98416 9.56733 11.08295 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.003187 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.210210 B = 8783.268292 C = 9334.940752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.063 4.063 11 S -0.269 6.269 12 C -0.087 4.087 13 C 0.097 3.903 14 H 0.076 0.924 15 C -0.147 4.147 16 C -0.146 4.146 17 C 0.103 3.897 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.127 4.127 23 O -0.339 6.339 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -24.317 2.625 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.211 4.211 11 S -0.040 6.040 12 C -0.235 4.235 13 C 0.038 3.962 14 H 0.093 0.907 15 C -0.186 4.186 16 C -0.184 4.184 17 C 0.064 3.936 18 C -0.143 4.143 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.164 4.164 23 O -0.259 6.259 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.106 -24.218 2.774 24.467 hybrid contribution 1.873 0.985 -0.206 2.126 sum 3.979 -23.232 2.568 23.710 Atomic orbital electron populations 1.69985 1.06059 1.26692 1.50188 1.25015 0.94888 0.99279 0.95122 0.86475 0.80000 0.83511 0.77655 1.19722 1.20919 1.20892 1.21151 0.93013 0.90338 1.51488 0.92466 1.18895 0.93413 0.89279 0.98522 1.23678 1.01468 0.93050 1.02879 1.87071 1.16496 1.02514 1.97959 1.23303 1.00068 0.95404 1.04768 1.22760 0.92129 0.92511 0.88801 0.90653 1.23182 0.98690 0.94903 1.01837 1.23005 0.97199 0.98157 1.00049 1.21881 0.93917 0.82336 0.95512 1.21608 0.99350 1.00071 0.93298 1.21491 0.93939 1.01917 0.98306 1.21505 0.97654 1.00124 0.96133 1.21472 0.97039 1.02237 0.94812 1.21947 0.94878 0.99864 0.99751 1.89051 1.76934 1.20300 1.39566 0.92869 0.95587 0.95509 0.91542 0.91650 0.89546 0.89998 0.90230 0.90379 0.90677 0.90497 0.91333 0.91480 0.90646 0.92416 0.92124 0.92665 0.90586 0.92444 0.91823 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 10 C -0.06 -1.37 5.88 37.16 0.22 -1.15 16 11 S -0.27 -5.22 21.59 -107.50 -2.32 -7.54 16 12 C -0.09 -1.26 5.70 37.16 0.21 -1.04 16 13 C 0.10 1.21 3.27 -25.67 -0.08 1.13 16 14 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 15 C -0.15 -1.37 6.59 -24.69 -0.16 -1.53 16 16 C -0.15 -1.24 6.26 -25.28 -0.16 -1.40 16 17 C 0.10 1.08 0.71 -90.39 -0.06 1.02 16 18 C -0.11 -1.02 4.72 -26.83 -0.13 -1.14 16 19 C -0.12 -1.24 5.80 -26.71 -0.15 -1.39 16 20 C -0.12 -1.13 5.91 -26.73 -0.16 -1.29 16 21 C -0.12 -1.27 5.80 -26.70 -0.15 -1.43 16 22 C -0.13 -1.25 4.65 -26.82 -0.12 -1.38 16 23 O -0.34 -4.67 9.24 -35.23 -0.33 -5.00 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 28 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 33 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 34 H 0.08 0.57 7.69 -51.93 -0.40 0.17 16 35 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.02 7.76 -51.93 -0.40 0.61 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -30.71 355.04 -11.21 -41.93 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -8.33 Total: -2.75 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.31 Total: -22.32 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.34 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.33 Total: -5.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -2.32 Total: -7.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.71 -11.21 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191025468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.019 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds