Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46810 * 180.02562 * 10 9 7 12 12 C 1.81398 * 103.00088 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.54120 * 57.13506 * 13 12 11 15 15 C 1.55011 * 110.61110 * 179.97438 * 13 12 11 16 16 C 1.54862 * 102.09805 * 155.41061 * 15 13 12 17 17 C 1.53900 * 104.10002 * 339.15104 * 16 15 13 18 18 C 1.52764 * 109.70676 * 238.56937 * 17 16 15 19 19 C 1.53041 * 109.48246 * 179.86917 * 18 17 16 20 20 C 1.52997 * 109.45431 * 59.53087 * 19 18 17 21 21 C 1.53002 * 109.52566 * 299.74879 * 20 19 18 22 22 C 1.52772 * 109.67523 * 117.43447 * 17 16 15 23 23 O 1.43518 * 107.52833 * 358.02483 * 17 16 15 24 24 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.09002 * 109.46881 * 299.99990 * 12 11 10 30 30 H 1.09000 * 109.46946 * 60.00038 * 12 11 10 31 31 H 1.09001 * 110.91263 * 273.60940 * 15 13 12 32 32 H 1.09005 * 110.90973 * 37.17754 * 15 13 12 33 33 H 1.08993 * 110.50521 * 97.80684 * 16 15 13 34 34 H 1.09005 * 110.50653 * 220.36042 * 16 15 13 35 35 H 1.09007 * 109.46789 * 299.87460 * 18 17 16 36 36 H 1.09002 * 109.46983 * 59.85897 * 18 17 16 37 37 H 1.08999 * 109.47188 * 299.53599 * 19 18 17 38 38 H 1.09003 * 109.47455 * 179.52887 * 19 18 17 39 39 H 1.09000 * 109.46175 * 179.73577 * 20 19 18 40 40 H 1.08999 * 109.46131 * 59.76719 * 20 19 18 41 41 H 1.09004 * 109.47684 * 300.27473 * 21 20 19 42 42 H 1.08997 * 109.47702 * 180.25278 * 21 20 19 43 43 H 1.09003 * 109.46736 * 300.16608 * 22 17 16 44 44 H 1.08997 * 109.47550 * 60.16806 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3382 -5.2331 0.0034 12 6 2.6649 -6.4702 0.0038 13 6 2.0541 -7.8731 0.0050 14 1 1.3932 -8.0032 -0.8520 15 6 3.1665 -8.9526 0.0047 16 6 2.4410 -10.1664 0.6360 17 6 1.2558 -9.5422 1.3938 18 6 1.3394 -9.9105 2.8741 19 6 0.1607 -9.2847 3.6231 20 6 -1.1518 -9.8031 3.0320 21 6 -1.2332 -9.4197 1.5530 22 6 -0.0580 -10.0463 0.7990 23 8 1.3458 -8.1182 1.2396 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5576 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 3.2810 -6.3425 -0.8863 30 1 3.2811 -6.3419 0.8937 31 1 3.4895 -9.1781 -1.0116 32 1 4.0111 -8.6410 0.6192 33 1 2.0840 -10.8436 -0.1398 34 1 3.1032 -10.6913 1.3245 35 1 1.3038 -10.9947 2.9813 36 1 2.2746 -9.5350 3.2896 37 1 0.2010 -8.2001 3.5228 38 1 0.2159 -9.5544 4.6778 39 1 -1.9914 -9.3611 3.5685 40 1 -1.1900 -10.8882 3.1285 41 1 -1.1904 -8.3349 1.4559 42 1 -2.1705 -9.7855 1.1338 43 1 -0.1111 -9.7671 -0.2533 44 1 -0.1053 -11.1315 0.8898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191025468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = -102.452426 kcal Electronic energy + Delta-G solvation = -20528.702767 eV Core-core repulsion = 17569.741529 eV Total energy + Delta-G solvation = -2958.961239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33797 -37.60239 -35.78848 -33.21096 -32.91116 -32.84258 -31.70328 -29.21439 -27.34960 -24.90927 -23.72008 -23.24081 -22.12881 -21.77691 -20.27211 -18.68863 -17.59811 -17.08713 -16.75483 -16.51395 -15.88498 -15.65370 -15.55305 -15.10302 -14.84191 -14.69790 -14.24240 -14.21023 -13.86765 -13.60155 -13.40512 -13.07194 -13.00355 -12.91741 -12.64594 -12.55608 -12.40202 -12.17710 -12.08396 -12.01778 -11.75212 -11.66714 -11.39994 -11.30685 -11.07321 -10.87418 -10.77849 -10.62915 -10.31036 -8.58468 -8.24206 -6.38376 0.78239 1.40029 1.40955 1.54518 1.80568 2.39635 2.86339 3.08773 3.55122 3.70134 3.78041 3.92499 3.97557 4.03088 4.19525 4.24355 4.28001 4.31427 4.36884 4.43872 4.51910 4.58939 4.61405 4.65029 4.76269 4.83050 4.86067 4.93063 4.94364 4.96608 5.09910 5.12993 5.20830 5.31521 5.32934 5.36209 5.38424 5.47609 5.47809 5.60159 5.72334 6.09511 6.19521 6.76068 7.31262 8.88034 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.003187 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.210210 B = 8783.268292 C = 9334.940752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.045 3.955 10 C -0.050 4.050 11 S -0.313 6.313 12 C -0.068 4.068 13 C 0.092 3.908 14 H 0.068 0.932 15 C -0.137 4.137 16 C -0.140 4.140 17 C 0.093 3.907 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.124 4.124 23 O -0.371 6.371 24 H 0.266 0.734 25 H -0.004 1.004 26 H -0.008 1.008 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -26.286 2.505 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.198 4.198 11 S -0.085 6.085 12 C -0.216 4.216 13 C 0.033 3.967 14 H 0.086 0.914 15 C -0.176 4.176 16 C -0.177 4.177 17 C 0.054 3.946 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.162 4.162 23 O -0.291 6.291 24 H 0.075 0.925 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.322 -26.192 2.654 26.679 hybrid contribution 1.119 1.506 -0.146 1.882 sum 5.441 -24.686 2.508 25.403 Atomic orbital electron populations 1.70132 1.08057 1.28033 1.50996 1.26067 0.95811 1.03672 0.94292 0.85258 0.79038 0.78013 0.77870 1.18193 1.20174 1.20282 1.21583 0.93699 0.91347 1.51558 0.91428 1.18670 0.93686 0.91620 0.95379 1.23304 1.00117 0.92742 1.03608 1.87219 1.19843 1.03302 1.98103 1.23435 0.98023 0.94224 1.05919 1.22814 0.93304 0.92142 0.88399 0.91394 1.23157 0.97454 0.93700 1.03324 1.23010 0.96332 0.97884 1.00490 1.22140 0.95078 0.80945 0.96455 1.21639 0.98481 1.01455 0.92527 1.21474 0.95044 0.99772 0.99458 1.21492 0.97128 1.01387 0.95086 1.21453 0.98228 0.99911 0.96117 1.21956 0.94115 1.01156 0.98972 1.89046 1.77387 1.22746 1.39915 0.92545 0.98590 0.98932 0.91019 0.90455 0.87403 0.89665 0.88202 0.89970 0.89103 0.88783 0.88717 0.91834 0.94260 0.91170 0.92580 0.90362 0.94436 0.91642 0.92582 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.04 2.52 4.98 29.85 0.15 2.67 16 10 C -0.05 -2.21 5.88 71.98 0.42 -1.79 16 11 S -0.31 -12.53 21.59 -56.49 -1.22 -13.75 16 12 C -0.07 -1.90 5.70 71.98 0.41 -1.49 16 13 C 0.09 2.20 3.27 31.28 0.10 2.30 16 14 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 15 C -0.14 -2.14 6.59 31.92 0.21 -1.93 16 16 C -0.14 -1.89 6.26 31.53 0.20 -1.69 16 17 C 0.09 1.78 0.71 -10.64 -0.01 1.78 16 18 C -0.10 -1.79 4.72 30.53 0.14 -1.64 16 19 C -0.12 -2.45 5.80 30.61 0.18 -2.27 16 20 C -0.11 -2.12 5.91 30.59 0.18 -1.94 16 21 C -0.12 -2.58 5.80 30.61 0.18 -2.40 16 22 C -0.12 -2.27 4.65 30.53 0.14 -2.13 16 23 O -0.37 -10.18 9.24 -148.98 -1.38 -11.56 16 24 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 25 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.24 8.06 -2.38 -0.02 1.22 16 33 H 0.09 0.97 7.68 -2.39 -0.02 0.96 16 34 H 0.09 0.99 7.69 -2.38 -0.02 0.98 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.04 1.07 7.76 -2.39 -0.02 1.05 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.04 1.08 7.76 -2.38 -0.02 1.06 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.10 8.11 -2.39 -0.02 1.08 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.54 355.04 3.64 -65.90 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.92 Total: 12.25 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.00 Total: -41.45 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.28 Total: -58.06 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.38 Total: -11.56 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -12.53 SS G_CDS: -1.22 Total: -13.75 kcal Total: -69.54 3.64 -65.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191025468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.555 kcal (2) G-P(sol) polarization free energy of solvation -69.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds