Wall clock time and date at job start Tue Mar 31 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46810 * 180.02562 * 10 9 7 12 12 C 1.81398 * 103.00088 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 11 10 14 14 H 1.08993 * 110.54440 * 305.70245 * 13 12 11 15 15 C 1.55014 * 110.60844 * 182.83498 * 13 12 11 16 16 C 1.55045 * 102.01644 * 204.70961 * 15 13 12 17 17 C 1.53892 * 104.16285 * 20.64942 * 16 15 13 18 18 C 1.52765 * 109.71879 * 121.53702 * 17 16 15 19 19 C 1.53047 * 109.46231 * 180.20701 * 18 17 16 20 20 C 1.52991 * 109.45260 * 300.45723 * 19 18 17 21 21 C 1.53004 * 109.53820 * 60.23296 * 20 19 18 22 22 C 1.52780 * 109.69320 * 242.68498 * 17 16 15 23 23 O 1.43526 * 107.53422 * 2.09679 * 17 16 15 24 24 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.09002 * 109.46881 * 299.99990 * 12 11 10 30 30 H 1.09000 * 109.46946 * 60.00038 * 12 11 10 31 31 H 1.08995 * 110.91255 * 322.79458 * 15 13 12 32 32 H 1.09001 * 110.90384 * 86.40003 * 15 13 12 33 33 H 1.08992 * 110.36220 * 262.02831 * 16 15 13 34 34 H 1.09002 * 110.70059 * 139.43365 * 16 15 13 35 35 H 1.08997 * 109.47270 * 300.20694 * 18 17 16 36 36 H 1.08998 * 109.46774 * 60.21058 * 18 17 16 37 37 H 1.09008 * 109.47194 * 180.46601 * 19 18 17 38 38 H 1.08993 * 109.47998 * 60.45723 * 19 18 17 39 39 H 1.09003 * 109.46091 * 300.21050 * 20 19 18 40 40 H 1.08999 * 109.45055 * 180.24938 * 20 19 18 41 41 H 1.09004 * 109.47149 * 179.76410 * 21 20 19 42 42 H 1.08999 * 109.47866 * 59.75703 * 21 20 19 43 43 H 1.08997 * 109.46962 * 299.76178 * 22 17 16 44 44 H 1.08998 * 109.46950 * 59.76724 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3382 -5.2331 0.0034 12 6 2.6649 -6.4702 0.0038 13 6 2.0541 -7.8731 0.0050 14 1 1.3556 -7.9854 0.8341 15 6 3.1649 -8.9518 0.0771 16 6 2.4660 -10.1783 -0.5639 17 6 1.3138 -9.5698 -1.3827 18 6 1.4590 -9.9666 -2.8508 19 6 0.3135 -9.3542 -3.6602 20 6 -1.0232 -9.8604 -3.1148 21 6 -1.1660 -9.4496 -1.6479 22 6 -0.0242 -10.0624 -0.8338 23 8 1.3977 -8.1428 -1.2530 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5576 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 3.2810 -6.3425 -0.8863 30 1 3.2811 -6.3419 0.8937 31 1 4.0359 -8.6530 -0.5062 32 1 3.4424 -9.1558 1.1113 33 1 2.0766 -10.8401 0.2096 34 1 3.1541 -10.7171 -1.2153 35 1 2.4113 -9.5998 -3.2338 36 1 1.4260 -11.0525 -2.9385 37 1 0.4123 -9.6441 -4.7064 38 1 0.3512 -8.2680 -3.5790 39 1 -1.0591 -10.9471 -3.1927 40 1 -1.8389 -9.4278 -3.6942 41 1 -2.1205 -9.8071 -1.2616 42 1 -1.1262 -8.3631 -1.5692 43 1 -0.0686 -11.1491 -0.9063 44 1 -0.1209 -9.7636 0.2099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191025480.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:20 Heat of formation + Delta-G solvation = -87.172502 kcal Electronic energy + Delta-G solvation = -20516.218712 eV Core-core repulsion = 17557.920061 eV Total energy + Delta-G solvation = -2958.298652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50464 -36.74809 -33.63522 -32.35161 -31.91909 -30.91135 -30.80520 -28.30476 -25.26425 -23.98951 -22.91834 -21.67557 -21.03084 -20.72711 -19.45014 -16.66299 -16.47579 -16.04805 -15.52455 -14.91303 -14.77409 -14.47031 -14.19471 -13.96381 -13.76666 -13.52172 -13.11173 -13.00558 -12.56182 -12.30817 -12.22686 -12.13879 -11.86097 -11.58346 -11.43582 -11.19865 -11.11112 -11.05835 -11.01361 -10.57228 -10.49967 -10.38611 -10.15590 -10.10624 -9.60906 -9.50714 -9.31934 -8.97867 -8.39122 -6.99969 -6.02703 -4.07019 2.24840 3.30191 3.33002 3.38158 3.41855 3.71099 4.34385 4.44377 4.47056 4.56929 4.74798 4.77882 4.89372 5.06251 5.08918 5.22992 5.24819 5.32748 5.33140 5.40490 5.42044 5.51458 5.54218 5.56996 5.63423 5.72831 5.77546 5.85701 5.89610 6.01317 6.05844 6.09389 6.16945 6.21562 6.24635 6.24704 6.45648 6.79367 7.03115 7.61573 7.70988 7.94315 8.31730 8.98294 9.56624 11.08181 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.003168 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.086086 B = 8835.697262 C = 9373.828596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.062 4.062 11 S -0.270 6.270 12 C -0.087 4.087 13 C 0.097 3.903 14 H 0.076 0.924 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.104 3.896 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.127 4.127 23 O -0.340 6.340 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -24.371 -2.579 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.210 4.210 11 S -0.042 6.042 12 C -0.235 4.235 13 C 0.038 3.962 14 H 0.094 0.906 15 C -0.186 4.186 16 C -0.184 4.184 17 C 0.064 3.936 18 C -0.143 4.143 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.164 4.164 23 O -0.260 6.260 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.235 -24.275 -2.735 24.530 hybrid contribution 1.859 0.992 0.210 2.117 sum 4.094 -23.283 -2.526 23.775 Atomic orbital electron populations 1.69985 1.06060 1.26696 1.50184 1.25015 0.94888 0.99280 0.95119 0.86475 0.80003 0.83510 0.77658 1.19719 1.20896 1.20910 1.21150 0.93014 0.90334 1.51495 0.92463 1.18897 0.93414 0.89280 0.98524 1.23676 1.01456 0.93001 1.02892 1.87058 1.16583 1.02599 1.97967 1.23299 1.00063 0.95363 1.04795 1.22766 0.92813 0.92438 0.88184 0.90638 1.23207 0.98802 0.94787 1.01785 1.23033 0.97549 0.98139 0.99694 1.21885 0.93966 0.82291 0.95496 1.21610 0.99437 1.00015 0.93277 1.21490 0.94003 1.01968 0.98182 1.21505 0.97496 1.00109 0.96310 1.21470 0.97197 1.02231 0.94660 1.21946 0.94831 0.99943 0.99727 1.89046 1.79485 1.20069 1.37352 0.92867 0.95498 0.95595 0.91629 0.91538 0.89947 0.89542 0.90388 0.90178 0.90687 0.90484 0.91480 0.91322 0.92415 0.90668 0.92658 0.92123 0.92435 0.90592 0.91599 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 10 C -0.06 -1.36 5.88 37.16 0.22 -1.14 16 11 S -0.27 -5.25 21.64 -107.50 -2.33 -7.57 16 12 C -0.09 -1.25 5.69 37.16 0.21 -1.04 16 13 C 0.10 1.21 3.24 -25.66 -0.08 1.13 16 14 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 15 C -0.15 -1.37 6.61 -24.59 -0.16 -1.53 16 16 C -0.15 -1.24 6.27 -25.19 -0.16 -1.40 16 17 C 0.10 1.08 0.71 -90.39 -0.06 1.01 16 18 C -0.11 -1.01 4.72 -26.83 -0.13 -1.14 16 19 C -0.12 -1.23 5.80 -26.71 -0.15 -1.38 16 20 C -0.12 -1.13 5.91 -26.73 -0.16 -1.29 16 21 C -0.12 -1.27 5.80 -26.71 -0.15 -1.42 16 22 C -0.13 -1.25 4.65 -26.82 -0.12 -1.38 16 23 O -0.34 -4.68 9.30 -35.23 -0.33 -5.00 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.36 8.14 -51.92 -0.42 0.93 16 28 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 29 H 0.08 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.08 0.71 8.05 -51.93 -0.42 0.30 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 34 H 0.08 0.57 7.69 -51.93 -0.40 0.17 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 1.01 7.76 -51.93 -0.40 0.61 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.66 8.11 -51.93 -0.42 0.23 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -30.70 355.12 -11.22 -41.92 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -8.32 Total: -2.74 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -1.31 Total: -22.28 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.33 Total: -5.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.33 Total: -7.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.70 -11.22 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191025480.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.256 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds