Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.45214 * 2 1 4 4 C 1.53031 * 109.46430 * 240.02167 * 2 1 3 5 5 C 1.53123 * 109.27892 * 180.80275 * 4 2 1 6 6 H 1.08999 * 109.52573 * 297.68738 * 5 4 2 7 7 C 1.50702 * 109.52369 * 177.55833 * 5 4 2 8 8 O 1.20820 * 119.99713 * 0.13123 * 7 5 4 9 9 O 1.34225 * 119.99732 * 180.40448 * 7 5 4 10 10 C 1.53117 * 109.21058 * 57.62431 * 5 4 2 11 11 C 1.53046 * 109.27708 * 302.43837 * 10 5 4 12 12 N 1.46851 * 109.46161 * 119.96826 * 2 1 3 13 13 C 1.46905 * 110.99883 * 305.85465 * 12 2 1 14 14 C 1.50695 * 109.47007 * 163.94887 * 13 12 2 15 15 O 1.21288 * 120.00153 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00360 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00398 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47060 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99773 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99767 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99923 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46929 * 90.00019 * 22 20 18 24 24 H 1.48496 * 109.46942 * 209.99659 * 22 20 18 25 25 H 1.48496 * 109.47194 * 330.00115 * 22 20 18 26 26 H 1.08996 * 109.46751 * 187.38226 * 1 2 3 27 27 H 1.09000 * 109.47553 * 307.38093 * 1 2 3 28 28 H 1.09000 * 109.47109 * 67.38367 * 1 2 3 29 29 H 1.09002 * 109.50324 * 60.86228 * 4 2 1 30 30 H 1.08999 * 109.50660 * 300.74189 * 4 2 1 31 31 H 0.96706 * 116.99647 * 179.72824 * 9 7 5 32 32 H 1.09003 * 109.50598 * 62.31848 * 10 5 4 33 33 H 1.08998 * 109.50586 * 182.43701 * 10 5 4 34 34 H 1.08998 * 109.40994 * 299.07541 * 11 10 5 35 35 H 1.08996 * 109.45826 * 179.12562 * 11 10 5 36 36 H 1.08995 * 109.47208 * 283.95366 * 13 12 2 37 37 H 1.09003 * 109.46820 * 43.95145 * 13 12 2 38 38 H 0.96998 * 119.99592 * 0.02562 * 16 14 13 39 39 H 1.09002 * 109.46835 * 299.99755 * 17 16 14 40 40 H 1.08996 * 109.47382 * 59.99574 * 17 16 14 41 41 H 0.97003 * 119.99849 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2498 5 6 3.5710 -0.7360 -1.2355 6 1 3.9458 0.2870 -1.2683 7 6 4.0785 -1.4969 -2.4332 8 8 3.2967 -1.9763 -3.2199 9 8 5.3988 -1.6468 -2.6231 10 6 4.0561 -1.4178 0.0469 11 6 3.4865 -0.6775 1.2592 12 7 2.0193 -0.6916 1.1995 13 6 1.4373 -0.1103 2.4166 14 6 1.6330 -1.0601 3.5701 15 8 2.2018 -2.1170 3.3956 16 7 1.1760 -0.7351 4.7956 17 6 1.3667 -1.6582 5.9171 18 6 0.7695 -1.0619 7.1657 19 1 0.2957 -0.0921 7.1277 20 6 0.8281 -1.7544 8.3566 21 7 0.3065 -1.2342 9.4460 22 14 1.6470 -3.4320 8.4220 23 1 3.0895 -3.2669 8.7337 24 1 1.0039 -4.2559 9.4769 25 1 1.4987 -4.1069 7.1076 26 1 -0.3633 -1.0191 0.1320 27 1 -0.3634 0.6239 0.8166 28 1 -0.3633 0.3952 -0.9486 29 1 1.6895 -0.1983 -2.1399 30 1 1.6660 -1.7448 -1.2574 31 1 5.6762 -2.1460 -3.4034 32 1 3.7148 -2.4529 0.0603 33 1 5.1453 -1.3927 0.0828 34 1 3.8403 0.3535 1.2532 35 1 3.8175 -1.1697 2.1737 36 1 1.9293 0.8367 2.6381 37 1 0.3717 0.0610 2.2637 38 1 0.7208 0.1100 4.9351 39 1 0.8753 -2.6055 5.6955 40 1 2.4323 -1.8288 6.0701 41 1 0.3481 -1.7213 10.2839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235353048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = -131.185739 kcal Electronic energy + Delta-G solvation = -22724.065495 eV Core-core repulsion = 19217.565072 eV Total energy + Delta-G solvation = -3506.500423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86989 -39.59712 -38.16557 -36.40574 -34.32477 -33.95920 -32.49908 -32.33981 -29.03776 -27.55545 -26.78237 -24.66403 -22.53610 -22.02247 -21.00738 -19.90684 -19.77102 -18.27241 -17.28889 -16.85746 -16.26073 -16.12506 -15.86928 -15.40613 -14.79430 -14.73729 -14.32580 -14.04748 -13.81102 -13.58272 -13.30235 -12.80834 -12.65210 -12.36951 -12.26622 -12.16455 -11.99871 -11.82663 -11.70370 -11.41654 -11.10461 -11.01015 -10.91619 -10.76901 -10.59774 -10.46661 -9.96662 -9.49608 -9.16677 -8.77586 -8.29980 -8.10045 -6.21795 -4.23922 1.93293 2.74821 3.25335 3.28622 3.33413 3.42554 3.50858 4.20126 4.32640 4.34143 4.50832 4.62005 4.85013 4.97573 5.09362 5.11675 5.13589 5.22890 5.32448 5.36454 5.40518 5.50503 5.58881 5.61677 5.74265 5.76051 5.96102 5.98400 6.02216 6.14874 6.24783 6.78298 6.95182 7.06916 7.08660 7.25789 7.40599 7.61465 8.15411 8.53518 8.75915 8.98546 9.38761 10.90195 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.003268 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.405531 B = 8566.202027 C = 9148.991325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 H 0.043 0.957 4 C -0.095 4.095 5 C -0.082 4.082 6 H 0.105 0.895 7 C 0.485 3.515 8 O -0.515 6.515 9 O -0.516 6.516 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.515 5.515 13 C 0.030 3.970 14 C 0.500 3.500 15 O -0.540 6.540 16 N -0.709 5.709 17 C 0.223 3.777 18 C -0.543 4.543 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.260 1.260 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.408 0.592 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.395 0.605 39 H 0.025 0.975 40 H 0.019 0.981 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 4.902 -22.670 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.132 4.132 5 C -0.101 4.101 6 H 0.123 0.877 7 C 0.327 3.673 8 O -0.403 6.403 9 O -0.328 6.328 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.241 5.241 13 C -0.101 4.101 14 C 0.284 3.716 15 O -0.418 6.418 16 N -0.359 5.359 17 C 0.100 3.900 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.185 1.185 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.228 0.772 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.112 3.696 -22.468 23.576 hybrid contribution 0.614 0.128 -0.171 0.650 sum 6.726 3.824 -22.639 23.924 Atomic orbital electron populations 1.21949 0.93774 1.03299 1.01842 1.21615 0.95919 0.95155 0.89815 0.93941 1.21558 0.91344 1.03303 0.97040 1.21191 0.97653 0.99977 0.91255 0.87685 1.23562 0.79773 0.77500 0.86442 1.90718 1.57147 1.46438 1.46001 1.84554 1.26409 1.71216 1.50605 1.21570 1.00664 1.00814 0.91141 1.22162 0.86731 0.98427 0.99698 1.61558 1.07412 1.54663 1.00447 1.22095 1.02269 0.95820 0.89923 1.20380 0.79717 0.87655 0.83823 1.90638 1.42499 1.24710 1.83946 1.46174 1.58075 1.22995 1.08638 1.19454 0.96540 0.89766 0.84214 1.21105 1.39095 1.06418 0.91502 0.90293 1.24803 0.94637 0.97995 0.95223 1.69881 1.44566 1.38660 0.99941 0.86811 0.79970 0.84187 0.78695 1.19887 1.20921 1.18457 0.91124 0.92098 0.91889 0.90614 0.89709 0.73321 0.90111 0.90140 0.95031 0.88414 0.92148 0.87546 0.77184 0.95745 0.96305 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.57 37.16 0.32 -1.04 16 2 C 0.08 0.82 2.44 -67.72 -0.17 0.65 16 3 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.09 -0.92 3.96 -26.65 -0.11 -1.03 16 5 C -0.08 -0.75 2.69 -91.65 -0.25 -0.99 16 6 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.48 4.82 7.63 36.01 0.27 5.10 16 8 O -0.52 -6.63 16.73 -18.75 -0.31 -6.94 16 9 O -0.52 -3.91 13.35 -39.24 -0.52 -4.43 16 10 C -0.10 -1.08 5.31 -26.65 -0.14 -1.23 16 11 C 0.06 0.69 5.11 -3.83 -0.02 0.67 16 12 N -0.52 -6.54 4.12 -228.11 -0.94 -7.48 16 13 C 0.03 0.39 5.26 -4.98 -0.03 0.36 16 14 C 0.50 9.16 7.52 -10.99 -0.08 9.07 16 15 O -0.54 -11.90 14.84 5.55 0.08 -11.82 16 16 N -0.71 -13.95 5.55 -61.47 -0.34 -14.29 16 17 C 0.22 5.41 4.50 -5.19 -0.02 5.39 16 18 C -0.54 -14.78 9.83 -34.44 -0.34 -15.11 16 19 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 21 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 22 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 31 H 0.41 1.42 9.10 45.56 0.41 1.84 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 1.46 6.34 -51.93 -0.33 1.13 16 36 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.11 1.20 5.55 -51.93 -0.29 0.91 16 38 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 39 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 40 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -34.21 332.96 -7.01 -41.22 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.44 Total: 3.72 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.65 Total: 3.92 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.51 Total: -47.42 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.76 Total: -23.19 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.21 -7.01 -41.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235353048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.965 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds