Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.45214 * 2 1 4 4 C 1.53031 * 109.46430 * 240.02167 * 2 1 3 5 5 C 1.53123 * 109.27892 * 180.80275 * 4 2 1 6 6 H 1.08999 * 109.52573 * 297.68738 * 5 4 2 7 7 C 1.50702 * 109.52369 * 177.55833 * 5 4 2 8 8 O 1.20820 * 119.99713 * 0.13123 * 7 5 4 9 9 O 1.34225 * 119.99732 * 180.40448 * 7 5 4 10 10 C 1.53117 * 109.21058 * 57.62431 * 5 4 2 11 11 C 1.53046 * 109.27708 * 302.43837 * 10 5 4 12 12 N 1.46851 * 109.46161 * 119.96826 * 2 1 3 13 13 C 1.46905 * 110.99883 * 305.85465 * 12 2 1 14 14 C 1.50695 * 109.47007 * 163.94887 * 13 12 2 15 15 O 1.21288 * 120.00153 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00360 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00398 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47060 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00198 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99773 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99767 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99923 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46929 * 90.00019 * 22 20 18 24 24 H 1.48496 * 109.46942 * 209.99659 * 22 20 18 25 25 H 1.48496 * 109.47194 * 330.00115 * 22 20 18 26 26 H 1.08996 * 109.46751 * 187.38226 * 1 2 3 27 27 H 1.09000 * 109.47553 * 307.38093 * 1 2 3 28 28 H 1.09000 * 109.47109 * 67.38367 * 1 2 3 29 29 H 1.09002 * 109.50324 * 60.86228 * 4 2 1 30 30 H 1.08999 * 109.50660 * 300.74189 * 4 2 1 31 31 H 0.96706 * 116.99647 * 179.72824 * 9 7 5 32 32 H 1.09003 * 109.50598 * 62.31848 * 10 5 4 33 33 H 1.08998 * 109.50586 * 182.43701 * 10 5 4 34 34 H 1.08998 * 109.40994 * 299.07541 * 11 10 5 35 35 H 1.08996 * 109.45826 * 179.12562 * 11 10 5 36 36 H 1.08995 * 109.47208 * 283.95366 * 13 12 2 37 37 H 1.09003 * 109.46820 * 43.95145 * 13 12 2 38 38 H 0.96998 * 119.99592 * 0.02562 * 16 14 13 39 39 H 1.09002 * 109.46835 * 299.99755 * 17 16 14 40 40 H 1.08996 * 109.47382 * 59.99574 * 17 16 14 41 41 H 0.97003 * 119.99849 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2498 5 6 3.5710 -0.7360 -1.2355 6 1 3.9458 0.2870 -1.2683 7 6 4.0785 -1.4969 -2.4332 8 8 3.2967 -1.9763 -3.2199 9 8 5.3988 -1.6468 -2.6231 10 6 4.0561 -1.4178 0.0469 11 6 3.4865 -0.6775 1.2592 12 7 2.0193 -0.6916 1.1995 13 6 1.4373 -0.1103 2.4166 14 6 1.6330 -1.0601 3.5701 15 8 2.2018 -2.1170 3.3956 16 7 1.1760 -0.7351 4.7956 17 6 1.3667 -1.6582 5.9171 18 6 0.7695 -1.0619 7.1657 19 1 0.2957 -0.0921 7.1277 20 6 0.8281 -1.7544 8.3566 21 7 0.3065 -1.2342 9.4460 22 14 1.6470 -3.4320 8.4220 23 1 3.0895 -3.2669 8.7337 24 1 1.0039 -4.2559 9.4769 25 1 1.4987 -4.1069 7.1076 26 1 -0.3633 -1.0191 0.1320 27 1 -0.3634 0.6239 0.8166 28 1 -0.3633 0.3952 -0.9486 29 1 1.6895 -0.1983 -2.1399 30 1 1.6660 -1.7448 -1.2574 31 1 5.6762 -2.1460 -3.4034 32 1 3.7148 -2.4529 0.0603 33 1 5.1453 -1.3927 0.0828 34 1 3.8403 0.3535 1.2532 35 1 3.8175 -1.1697 2.1737 36 1 1.9293 0.8367 2.6381 37 1 0.3717 0.0610 2.2637 38 1 0.7208 0.1100 4.9351 39 1 0.8753 -2.6055 5.6955 40 1 2.4323 -1.8288 6.0701 41 1 0.3481 -1.7213 10.2839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235353048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -158.278823 kcal Electronic energy + Delta-G solvation = -22725.240339 eV Core-core repulsion = 19217.565072 eV Total energy + Delta-G solvation = -3507.675267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66827 -40.75774 -39.35218 -37.13542 -36.09715 -34.89177 -34.35658 -33.33189 -30.58923 -28.79937 -27.72338 -25.71580 -23.83304 -23.36462 -21.90495 -21.28762 -20.67001 -19.13604 -18.98610 -17.70090 -17.63172 -17.28399 -16.93098 -16.57816 -16.21686 -15.97843 -15.72717 -15.05962 -15.02305 -14.64279 -14.47808 -14.21760 -14.11816 -13.81377 -13.37549 -13.04196 -12.97269 -12.85732 -12.74980 -12.62619 -12.54959 -12.26209 -11.93404 -11.86754 -11.71555 -11.63899 -11.47987 -11.28351 -10.90839 -10.64831 -9.85643 -9.19587 -8.39379 -6.45771 1.17558 1.32606 1.35322 1.47945 1.83118 2.11291 2.28211 2.33415 2.96256 3.04666 3.56912 3.71792 3.88317 3.95051 4.13138 4.25387 4.35177 4.36921 4.39713 4.46509 4.54077 4.66502 4.81386 4.82982 4.85454 4.98822 4.99599 5.05916 5.09936 5.15190 5.25552 5.28659 5.42985 5.58788 5.61128 5.98619 6.13526 6.22974 6.55894 6.93779 6.98482 7.18030 7.51790 8.75371 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.003268 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.405531 B = 8566.202027 C = 9148.991325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.086 3.914 3 H 0.067 0.933 4 C -0.092 4.092 5 C -0.077 4.077 6 H 0.134 0.866 7 C 0.490 3.510 8 O -0.550 6.550 9 O -0.511 6.511 10 C -0.097 4.097 11 C 0.059 3.941 12 N -0.540 5.540 13 C 0.043 3.957 14 C 0.498 3.502 15 O -0.580 6.580 16 N -0.710 5.710 17 C 0.235 3.765 18 C -0.545 4.545 19 H 0.061 0.939 20 C 0.026 3.974 21 N -0.932 5.932 22 Si 0.937 3.063 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.263 1.263 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.426 0.574 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.408 0.592 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 6.094 -24.295 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.130 4.130 5 C -0.096 4.096 6 H 0.152 0.848 7 C 0.334 3.666 8 O -0.441 6.441 9 O -0.324 6.324 10 C -0.135 4.135 11 C -0.069 4.069 12 N -0.266 5.266 13 C -0.088 4.088 14 C 0.285 3.715 15 O -0.460 6.460 16 N -0.361 5.361 17 C 0.111 3.889 18 C -0.583 4.583 19 H 0.079 0.921 20 C -0.174 4.174 21 N -0.571 5.571 22 Si 0.760 3.240 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.187 1.187 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.288 0.712 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.146 0.854 38 H 0.243 0.757 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.890 4.914 -24.122 25.563 hybrid contribution 0.398 -0.221 0.281 0.535 sum 7.288 4.693 -23.841 25.368 Atomic orbital electron populations 1.21964 0.93260 1.02343 1.03280 1.21685 0.96312 0.95912 0.88183 0.91479 1.21518 0.91852 1.01907 0.97679 1.21189 0.97256 1.01153 0.90026 0.84840 1.23664 0.80102 0.76752 0.86100 1.90712 1.58106 1.47923 1.47347 1.84511 1.25042 1.71207 1.51669 1.21465 1.01351 0.99221 0.91445 1.22086 0.86658 0.99485 0.98659 1.61475 1.07841 1.56131 1.01168 1.22020 1.04006 0.94892 0.87853 1.21362 0.77996 0.87892 0.84280 1.90623 1.44020 1.26840 1.84534 1.46028 1.58802 1.22928 1.08292 1.19022 0.95288 0.89878 0.84743 1.21316 1.38489 1.05744 0.92702 0.92132 1.25590 0.95290 1.01512 0.95011 1.69980 1.46074 1.40352 1.00661 0.85870 0.79425 0.80032 0.78628 1.18948 1.19899 1.18700 0.93196 0.91129 0.90079 0.89291 0.92461 0.71216 0.92833 0.88798 0.92584 0.91867 0.89304 0.85418 0.75652 0.97399 0.97277 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.57 71.98 0.62 -1.71 16 2 C 0.09 1.45 2.44 44.94 0.11 1.56 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.09 -1.62 3.96 30.65 0.12 -1.49 16 5 C -0.08 -1.24 2.69 -11.46 -0.03 -1.27 16 6 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 7 C 0.49 8.93 7.63 71.24 0.54 9.47 16 8 O -0.55 -13.70 16.73 21.98 0.37 -13.33 16 9 O -0.51 -6.62 13.35 -51.37 -0.69 -7.30 16 10 C -0.10 -1.90 5.31 30.65 0.16 -1.74 16 11 C 0.06 1.32 5.11 86.33 0.44 1.76 16 12 N -0.54 -12.72 4.12 -875.62 -3.61 -16.33 16 13 C 0.04 1.01 5.26 85.55 0.45 1.46 16 14 C 0.50 17.88 7.52 87.66 0.66 18.54 16 15 O -0.58 -25.81 14.84 -3.06 -0.05 -25.85 16 16 N -0.71 -27.56 5.55 -466.79 -2.59 -30.15 16 17 C 0.23 11.47 4.50 85.63 0.39 11.85 16 18 C -0.54 -29.90 9.83 25.60 0.25 -29.65 16 19 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 20 C 0.03 1.48 5.47 84.66 0.46 1.94 16 21 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 22 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 31 H 0.43 2.10 9.10 -74.05 -0.67 1.42 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.88 6.34 -2.39 -0.02 1.86 16 36 H 0.09 1.65 8.05 -2.39 -0.02 1.64 16 37 H 0.13 2.50 5.55 -2.39 -0.01 2.49 16 38 H 0.41 13.59 8.32 -92.71 -0.77 12.82 16 39 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 40 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -75.14 332.96 -0.65 -75.79 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -0.45 Total: 15.54 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.17 Total: 10.73 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -5.90 Total: -101.75 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.36 Total: -46.49 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -75.14 -0.65 -75.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235353048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.484 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds