Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.49373 * 2 1 4 4 C 1.53035 * 109.50183 * 120.07082 * 2 1 3 5 5 C 1.53037 * 109.53806 * 58.58725 * 4 2 1 6 6 H 1.08997 * 109.49900 * 301.41454 * 5 4 2 7 7 C 1.50696 * 109.52617 * 181.33469 * 5 4 2 8 8 O 1.20827 * 119.99701 * 0.14289 * 7 5 4 9 9 O 1.34230 * 120.00484 * 180.14889 * 7 5 4 10 10 C 1.53198 * 109.31496 * 61.36580 * 5 4 2 11 11 N 1.46926 * 108.77329 * 305.36788 * 10 5 4 12 12 C 1.34781 * 120.62929 * 233.58639 * 11 10 5 13 13 O 1.21586 * 119.99917 * 185.03614 * 12 11 10 14 14 N 1.34777 * 119.99851 * 5.02920 * 12 11 10 15 15 C 1.46500 * 119.99945 * 174.92734 * 14 12 11 16 16 C 1.52991 * 109.47220 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47553 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99614 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99968 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00065 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47313 * 89.99832 * 21 19 17 23 23 H 1.48500 * 109.47134 * 209.99969 * 21 19 17 24 24 H 1.48498 * 109.46983 * 329.99706 * 21 19 17 25 25 C 1.46923 * 118.74264 * 53.85698 * 11 10 5 26 26 H 1.08999 * 109.47085 * 299.92513 * 1 2 3 27 27 H 1.09000 * 109.47810 * 59.93277 * 1 2 3 28 28 H 1.09002 * 109.46759 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.45850 * 298.56885 * 4 2 1 30 30 H 1.09001 * 109.46046 * 178.60382 * 4 2 1 31 31 H 0.96701 * 117.00322 * 180.02562 * 9 7 5 32 32 H 1.08998 * 109.58638 * 185.58212 * 10 5 4 33 33 H 1.08996 * 109.69964 * 65.21852 * 10 5 4 34 34 H 0.96994 * 120.00148 * 354.93591 * 14 12 11 35 35 H 1.09003 * 109.46631 * 60.00179 * 15 14 12 36 36 H 1.09003 * 109.47395 * 300.00778 * 15 14 12 37 37 H 1.09003 * 109.47353 * 300.00536 * 16 15 14 38 38 H 1.09003 * 109.47391 * 60.00376 * 16 15 14 39 39 H 0.96995 * 120.00007 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58631 * 65.92512 * 25 11 10 41 41 H 1.09001 * 109.59034 * 186.35450 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7228 1.2484 5 6 1.5032 -2.1555 1.2663 6 1 0.4134 -2.1353 1.2545 7 6 1.9796 -2.8568 2.5122 8 8 2.6759 -2.2703 3.3067 9 8 1.6306 -4.1328 2.7393 10 6 2.0141 -2.9040 0.0312 11 7 1.6516 -2.1383 -1.1693 12 6 0.9748 -2.7224 -2.1779 13 8 0.7605 -2.1058 -3.2036 14 7 0.5356 -3.9902 -2.0495 15 6 -0.2947 -4.5875 -3.0983 16 6 -0.6551 -6.0223 -2.7082 17 6 -1.5087 -6.6370 -3.7874 18 1 -1.7678 -6.0619 -4.6640 19 6 -1.9579 -7.9339 -3.6561 20 7 -2.7032 -8.4701 -4.5977 21 14 -1.5091 -8.9289 -2.1402 22 1 -2.5422 -8.7281 -1.0926 23 1 -1.4385 -10.3688 -2.4963 24 1 -0.1897 -8.4807 -1.6267 25 6 2.0462 -0.7255 -1.2520 26 1 -0.3633 0.5127 0.8906 27 1 -0.3635 0.5149 -0.8893 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6988 -0.1954 2.1388 30 1 3.1306 -0.7442 1.2353 31 1 1.9600 -4.5401 3.5522 32 1 1.5555 -3.8918 -0.0131 33 1 3.0979 -3.0063 0.0858 34 1 0.7691 -4.5070 -1.2626 35 1 0.2566 -4.5938 -4.0386 36 1 -1.2074 -4.0032 -3.2162 37 1 0.2573 -6.6068 -2.5901 38 1 -1.2066 -6.0156 -1.7680 39 1 -3.0195 -9.3824 -4.5052 40 1 3.1326 -0.6517 -1.2985 41 1 1.6087 -0.2755 -2.1432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263381313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -127.552284 kcal Electronic energy + Delta-G solvation = -23165.729360 eV Core-core repulsion = 19659.386495 eV Total energy + Delta-G solvation = -3506.342865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15946 -40.01952 -37.92552 -36.44207 -35.06271 -33.78061 -32.67842 -32.33005 -30.03385 -27.24664 -25.98883 -25.02623 -24.33152 -21.79820 -20.85032 -20.32692 -18.97210 -18.41908 -18.16606 -16.96572 -16.86202 -16.45492 -15.72821 -15.34028 -14.67440 -14.53810 -14.32038 -14.13505 -14.01893 -13.83629 -13.53544 -13.33145 -13.02013 -12.60387 -12.40875 -11.98690 -11.85833 -11.60692 -11.45471 -11.28879 -11.17425 -11.08934 -10.86600 -10.78455 -10.39049 -10.25937 -9.96214 -9.75056 -9.32424 -8.87411 -8.62019 -8.36128 -6.10677 -4.10696 1.80271 2.54384 2.84592 3.25213 3.32953 3.34147 3.40101 4.04668 4.14871 4.34573 4.37950 4.52076 4.62010 4.79777 4.94082 5.03710 5.13341 5.22335 5.30498 5.39078 5.49012 5.54825 5.57693 5.79096 5.81030 5.88214 6.04259 6.10045 6.16719 6.24282 6.42050 6.58045 6.78807 6.95522 7.22524 7.24927 7.53325 7.67593 8.16702 8.45225 8.82559 8.94160 9.49497 11.02415 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.004404 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.856213 B = 6356.022929 C = 7579.754239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.097 4.097 5 C -0.100 4.100 6 H 0.120 0.880 7 C 0.487 3.513 8 O -0.513 6.513 9 O -0.512 6.512 10 C 0.124 3.876 11 N -0.631 5.631 12 C 0.706 3.294 13 O -0.587 6.587 14 N -0.742 5.742 15 C 0.147 3.853 16 C -0.022 4.022 17 C -0.522 4.522 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.131 3.869 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.412 0.588 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.391 0.609 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.065 0.935 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 14.056 16.035 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.107 0.893 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.137 0.863 7 C 0.328 3.672 8 O -0.401 6.401 9 O -0.324 6.324 10 C 0.000 4.000 11 N -0.370 5.370 12 C 0.407 3.593 13 O -0.465 6.465 14 N -0.398 5.398 15 C 0.024 3.976 16 C -0.059 4.059 17 C -0.560 4.560 18 H 0.094 0.906 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.007 3.993 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.271 0.729 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.226 0.774 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.636 14.659 15.022 23.531 hybrid contribution 0.444 -1.282 1.850 2.294 sum 11.080 13.377 16.872 24.215 Atomic orbital electron populations 1.21858 0.94442 1.02408 1.01889 1.21632 0.96945 0.99656 0.94289 0.89288 1.21464 1.01383 0.91945 0.98699 1.21548 1.04140 0.96129 0.90150 0.86269 1.23338 0.76609 0.79725 0.87524 1.90725 1.35591 1.66422 1.47381 1.84571 1.72101 1.27869 1.47831 1.21438 1.00570 0.94971 0.83066 1.47202 1.60599 1.11659 1.17529 1.15892 0.78307 0.82132 0.82966 1.90903 1.63103 1.64418 1.28071 1.45736 1.55942 1.12524 1.25632 1.21398 0.92689 0.94715 0.88750 1.19795 0.97103 0.91190 0.97858 1.20912 1.31092 0.98541 1.05464 0.90579 1.24991 0.94472 0.97523 0.96251 1.69903 1.35280 1.14971 1.33548 0.86760 0.79435 0.79413 0.83517 1.20228 1.21300 1.19076 1.21626 0.99153 0.79625 0.98848 0.92681 0.92115 0.92288 0.90578 0.90655 0.72906 0.88908 0.90759 0.77368 0.92001 0.92169 0.96050 0.96471 0.92563 0.91675 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.71 37.16 0.32 -1.01 16 2 C -0.11 -0.84 3.21 -90.27 -0.29 -1.13 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.10 -0.76 4.01 -26.69 -0.11 -0.87 16 5 C -0.10 -0.84 2.44 -91.65 -0.22 -1.07 16 6 H 0.12 1.02 6.33 -51.93 -0.33 0.69 16 7 C 0.49 4.39 7.63 36.00 0.27 4.67 16 8 O -0.51 -5.93 16.74 -18.75 -0.31 -6.25 16 9 O -0.51 -3.79 13.35 -39.26 -0.52 -4.31 16 10 C 0.12 1.16 5.64 -3.71 -0.02 1.14 16 11 N -0.63 -7.54 2.40 -178.23 -0.43 -7.97 16 12 C 0.71 11.58 8.30 -86.91 -0.72 10.86 16 13 O -0.59 -11.94 15.78 5.29 0.08 -11.85 16 14 N -0.74 -12.24 5.47 -65.23 -0.36 -12.60 16 15 C 0.15 2.99 5.62 -4.05 -0.02 2.97 16 16 C -0.02 -0.49 4.16 -27.89 -0.12 -0.60 16 17 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 21 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 25 C 0.13 1.32 5.85 -3.48 -0.02 1.30 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 29 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.41 1.40 9.10 45.56 0.41 1.82 16 32 H 0.09 0.87 5.57 -51.93 -0.29 0.58 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.39 5.46 5.93 -40.82 -0.24 5.21 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 38 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.18 7.03 -51.93 -0.37 0.82 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -34.53 330.81 -7.08 -41.61 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.27 Total: 3.33 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.35 Total: 3.30 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.01 Total: -47.01 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.75 Total: -22.41 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.53 -7.08 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263381313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.942 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds