Wall clock time and date at job start Tue Mar 31 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.49373 * 2 1 4 4 C 1.53035 * 109.50183 * 120.07082 * 2 1 3 5 5 C 1.53037 * 109.53806 * 58.58725 * 4 2 1 6 6 H 1.08997 * 109.49900 * 301.41454 * 5 4 2 7 7 C 1.50696 * 109.52617 * 181.33469 * 5 4 2 8 8 O 1.20827 * 119.99701 * 0.14289 * 7 5 4 9 9 O 1.34230 * 120.00484 * 180.14889 * 7 5 4 10 10 C 1.53198 * 109.31496 * 61.36580 * 5 4 2 11 11 N 1.46926 * 108.77329 * 305.36788 * 10 5 4 12 12 C 1.34781 * 120.62929 * 233.58639 * 11 10 5 13 13 O 1.21586 * 119.99917 * 185.03614 * 12 11 10 14 14 N 1.34777 * 119.99851 * 5.02920 * 12 11 10 15 15 C 1.46500 * 119.99945 * 174.92734 * 14 12 11 16 16 C 1.52991 * 109.47220 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47553 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99614 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99968 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00065 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47313 * 89.99832 * 21 19 17 23 23 H 1.48500 * 109.47134 * 209.99969 * 21 19 17 24 24 H 1.48498 * 109.46983 * 329.99706 * 21 19 17 25 25 C 1.46923 * 118.74264 * 53.85698 * 11 10 5 26 26 H 1.08999 * 109.47085 * 299.92513 * 1 2 3 27 27 H 1.09000 * 109.47810 * 59.93277 * 1 2 3 28 28 H 1.09002 * 109.46759 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.45850 * 298.56885 * 4 2 1 30 30 H 1.09001 * 109.46046 * 178.60382 * 4 2 1 31 31 H 0.96701 * 117.00322 * 180.02562 * 9 7 5 32 32 H 1.08998 * 109.58638 * 185.58212 * 10 5 4 33 33 H 1.08996 * 109.69964 * 65.21852 * 10 5 4 34 34 H 0.96994 * 120.00148 * 354.93591 * 14 12 11 35 35 H 1.09003 * 109.46631 * 60.00179 * 15 14 12 36 36 H 1.09003 * 109.47395 * 300.00778 * 15 14 12 37 37 H 1.09003 * 109.47353 * 300.00536 * 16 15 14 38 38 H 1.09003 * 109.47391 * 60.00376 * 16 15 14 39 39 H 0.96995 * 120.00007 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58631 * 65.92512 * 25 11 10 41 41 H 1.09001 * 109.59034 * 186.35450 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7228 1.2484 5 6 1.5032 -2.1555 1.2663 6 1 0.4134 -2.1353 1.2545 7 6 1.9796 -2.8568 2.5122 8 8 2.6759 -2.2703 3.3067 9 8 1.6306 -4.1328 2.7393 10 6 2.0141 -2.9040 0.0312 11 7 1.6516 -2.1383 -1.1693 12 6 0.9748 -2.7224 -2.1779 13 8 0.7605 -2.1058 -3.2036 14 7 0.5356 -3.9902 -2.0495 15 6 -0.2947 -4.5875 -3.0983 16 6 -0.6551 -6.0223 -2.7082 17 6 -1.5087 -6.6370 -3.7874 18 1 -1.7678 -6.0619 -4.6640 19 6 -1.9579 -7.9339 -3.6561 20 7 -2.7032 -8.4701 -4.5977 21 14 -1.5091 -8.9289 -2.1402 22 1 -2.5422 -8.7281 -1.0926 23 1 -1.4385 -10.3688 -2.4963 24 1 -0.1897 -8.4807 -1.6267 25 6 2.0462 -0.7255 -1.2520 26 1 -0.3633 0.5127 0.8906 27 1 -0.3635 0.5149 -0.8893 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6988 -0.1954 2.1388 30 1 3.1306 -0.7442 1.2353 31 1 1.9600 -4.5401 3.5522 32 1 1.5555 -3.8918 -0.0131 33 1 3.0979 -3.0063 0.0858 34 1 0.7691 -4.5070 -1.2626 35 1 0.2566 -4.5938 -4.0386 36 1 -1.2074 -4.0032 -3.2162 37 1 0.2573 -6.6068 -2.5901 38 1 -1.2066 -6.0156 -1.7680 39 1 -3.0195 -9.3824 -4.5052 40 1 3.1326 -0.6517 -1.2985 41 1 1.6087 -0.2755 -2.1432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263381313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:59 Heat of formation + Delta-G solvation = -152.436461 kcal Electronic energy + Delta-G solvation = -23166.808419 eV Core-core repulsion = 19659.386495 eV Total energy + Delta-G solvation = -3507.421924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99336 -41.00304 -38.90709 -37.11222 -36.65532 -35.04909 -34.35086 -33.14787 -31.79599 -28.08437 -27.20800 -25.87217 -25.71300 -22.84934 -22.32077 -21.46608 -19.83991 -19.33387 -18.99904 -18.94275 -17.66729 -17.38069 -16.89343 -16.47001 -16.24340 -15.61313 -15.45293 -15.24347 -15.08455 -14.89429 -14.65754 -14.48846 -14.25444 -13.96945 -13.35555 -13.17005 -13.00769 -12.69841 -12.52849 -12.30459 -12.15837 -12.14297 -11.98552 -11.81151 -11.74091 -11.61919 -11.52986 -11.45505 -11.11015 -10.76497 -10.19409 -9.52175 -8.27652 -6.34818 1.11244 1.41002 1.43711 1.54875 1.59379 2.08935 2.13119 2.39118 2.94046 3.07610 3.45549 3.64036 3.82550 3.91360 4.10669 4.22588 4.34095 4.38144 4.46613 4.47509 4.62708 4.70080 4.72415 4.78181 4.84200 4.93043 5.07993 5.13102 5.17204 5.21164 5.36764 5.43767 5.45006 5.54602 5.61605 5.68738 5.89061 6.25390 6.72317 6.96154 6.98442 7.29695 7.55026 8.89217 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.004404 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.856213 B = 6356.022929 C = 7579.754239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.112 0.888 4 C -0.092 4.092 5 C -0.096 4.096 6 H 0.120 0.880 7 C 0.496 3.504 8 O -0.540 6.540 9 O -0.511 6.511 10 C 0.121 3.879 11 N -0.620 5.620 12 C 0.703 3.297 13 O -0.633 6.633 14 N -0.734 5.734 15 C 0.164 3.836 16 C -0.011 4.011 17 C -0.538 4.538 18 H 0.029 0.971 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.958 3.042 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.236 1.236 25 C 0.125 3.875 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.429 0.571 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.406 0.594 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.613 14.027 19.381 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.130 0.870 4 C -0.130 4.130 5 C -0.116 4.116 6 H 0.138 0.862 7 C 0.339 3.661 8 O -0.430 6.430 9 O -0.325 6.325 10 C -0.002 4.002 11 N -0.357 5.357 12 C 0.405 3.595 13 O -0.514 6.514 14 N -0.391 5.391 15 C 0.040 3.960 16 C -0.049 4.049 17 C -0.576 4.576 18 H 0.047 0.953 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.780 3.220 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.159 1.159 25 C 0.003 3.997 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.292 0.708 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.245 0.755 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.397 14.644 18.437 26.610 hybrid contribution -0.115 -1.222 0.752 1.439 sum 12.282 13.423 19.190 26.443 Atomic orbital electron populations 1.21851 0.95321 1.01352 1.02033 1.21581 0.96033 1.00594 0.93180 0.87036 1.21430 1.01622 0.91446 0.98468 1.21500 1.04170 0.96414 0.89542 0.86242 1.23249 0.75836 0.79947 0.87113 1.90726 1.36863 1.67102 1.48293 1.84533 1.71850 1.27066 1.49043 1.21632 1.01747 0.94766 0.82085 1.47172 1.59007 1.12429 1.17107 1.16006 0.78445 0.81753 0.83312 1.90877 1.64873 1.65361 1.30285 1.45349 1.55597 1.12921 1.25264 1.20885 0.92312 0.93741 0.89098 1.19638 0.96741 0.91911 0.96616 1.21244 1.32018 0.98795 1.05567 0.95281 1.26061 0.94117 0.98857 1.00160 1.70077 1.37030 1.15650 1.36393 0.85559 0.80733 0.77020 0.78710 1.18921 1.21373 1.15872 1.21827 1.00266 0.78496 0.99140 0.91109 0.93422 0.93919 0.90142 0.90142 0.70839 0.88635 0.88941 0.75510 0.94082 0.93945 0.94580 0.94583 0.92364 0.89646 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.71 71.98 0.63 -1.82 16 2 C -0.09 -1.28 3.21 -10.57 -0.03 -1.31 16 3 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.09 -1.17 4.01 30.62 0.12 -1.05 16 5 C -0.10 -1.35 2.44 -11.46 -0.03 -1.38 16 6 H 0.12 1.73 6.33 -2.39 -0.02 1.72 16 7 C 0.50 7.46 7.63 71.23 0.54 8.00 16 8 O -0.54 -11.02 16.74 21.96 0.37 -10.65 16 9 O -0.51 -5.85 13.35 -51.42 -0.69 -6.53 16 10 C 0.12 1.91 5.64 86.36 0.49 2.40 16 11 N -0.62 -13.78 2.40 -836.05 -2.01 -15.78 16 12 C 0.70 22.71 8.30 179.05 1.49 24.20 16 13 O -0.63 -26.28 15.78 -3.99 -0.06 -26.34 16 14 N -0.73 -23.35 5.47 -478.54 -2.62 -25.96 16 15 C 0.16 6.73 5.62 86.38 0.49 7.21 16 16 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 17 C -0.54 -30.55 9.66 25.60 0.25 -30.31 16 18 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 19 C 0.01 0.29 5.47 84.65 0.46 0.75 16 20 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 21 Si 0.96 41.80 27.47 68.60 1.88 43.68 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 25 C 0.13 2.32 5.85 86.51 0.51 2.83 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.84 5.97 -2.39 -0.01 0.82 16 29 H 0.08 1.01 8.07 -2.39 -0.02 1.00 16 30 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.43 1.51 9.10 -74.06 -0.67 0.84 16 32 H 0.10 1.47 5.57 -2.39 -0.01 1.45 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 10.27 5.93 -92.71 -0.55 9.72 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.50 7.20 -2.39 -0.02 1.48 16 38 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.80 7.03 -2.39 -0.02 1.79 16 Total: -1.00 -77.12 330.81 1.99 -75.14 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.22 Total: 16.13 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.03 Total: 9.16 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.32 Total: -100.59 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.38 Total: -43.53 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.68 kcal Total: -77.12 1.99 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263381313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.300 kcal (2) G-P(sol) polarization free energy of solvation -77.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds