Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49337 * 2 1 4 4 C 1.53040 * 109.52453 * 120.07114 * 2 1 3 5 5 C 1.53040 * 109.53612 * 181.33470 * 4 2 1 6 6 H 1.08995 * 109.52220 * 58.60856 * 5 4 2 7 7 C 1.50704 * 109.49738 * 178.68697 * 5 4 2 8 8 O 1.20825 * 119.99912 * 359.84115 * 7 5 4 9 9 O 1.34231 * 120.00057 * 179.83727 * 7 5 4 10 10 C 1.53193 * 109.31345 * 298.63659 * 5 4 2 11 11 N 1.46928 * 108.77266 * 54.63835 * 10 5 4 12 12 C 1.34773 * 120.62954 * 126.36823 * 11 10 5 13 13 O 1.21592 * 119.99997 * 174.98099 * 12 11 10 14 14 N 1.34782 * 120.00348 * 354.98172 * 12 11 10 15 15 C 1.46495 * 120.00004 * 185.07374 * 14 12 11 16 16 C 1.53006 * 109.46986 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47003 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00368 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99659 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00052 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47019 * 89.99851 * 21 19 17 23 23 H 1.48503 * 109.47242 * 209.99846 * 21 19 17 24 24 H 1.48503 * 109.47260 * 330.00284 * 21 19 17 25 25 C 1.46926 * 118.73985 * 306.38947 * 11 10 5 26 26 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47589 * 300.00072 * 1 2 3 28 28 H 1.08993 * 109.47528 * 60.00572 * 1 2 3 29 29 H 1.08995 * 109.46448 * 301.36238 * 4 2 1 30 30 H 1.09003 * 109.45512 * 61.31730 * 4 2 1 31 31 H 0.96700 * 116.99795 * 180.02562 * 9 7 5 32 32 H 1.08995 * 109.58808 * 294.84843 * 10 5 4 33 33 H 1.09003 * 109.70100 * 174.49345 * 10 5 4 34 34 H 0.96993 * 119.99753 * 5.07489 * 14 12 11 35 35 H 1.09003 * 109.47056 * 299.99710 * 15 14 12 36 36 H 1.08999 * 109.47322 * 60.00027 * 15 14 12 37 37 H 1.09003 * 109.46684 * 299.99569 * 16 15 14 38 38 H 1.08999 * 109.47369 * 59.99687 * 16 15 14 39 39 H 0.97005 * 120.00122 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.58612 * 293.82262 * 25 11 10 41 41 H 1.08997 * 109.58724 * 173.40209 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7228 1.2483 5 6 3.5715 -0.6939 1.2655 6 1 3.9164 0.3400 1.2538 7 6 4.0735 -1.3776 2.5112 8 8 3.2883 -1.8381 3.3057 9 8 5.3929 -1.4750 2.7380 10 6 4.1060 -1.4253 0.0301 11 7 3.5047 -0.8280 -1.1701 12 6 4.2807 -0.3841 -2.1785 13 8 3.7705 0.0240 -3.2040 14 7 5.6224 -0.3926 -2.0505 15 6 6.4620 0.1917 -3.0992 16 6 7.9351 0.0519 -2.7101 17 6 8.7988 0.6535 -3.7886 18 1 8.3427 1.0913 -4.6643 19 6 10.1713 0.6449 -3.6575 20 7 10.7267 0.1122 -2.5911 21 14 11.2420 1.3899 -4.9947 22 1 11.4715 2.8275 -4.7015 23 1 12.5453 0.6794 -5.0386 24 1 10.5602 1.2552 -6.3071 25 6 2.0413 -0.7234 -1.2497 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6588 -0.2244 2.1389 30 1 1.6979 -1.7571 1.2353 31 1 5.6668 -1.9224 3.5503 32 1 3.8388 -2.4806 0.0862 33 1 5.1904 -1.3249 -0.0158 34 1 6.0320 -0.7855 -1.2640 35 1 6.2840 -0.3298 -4.0397 36 1 6.2153 1.2469 -3.2164 37 1 8.1135 0.5731 -1.7695 38 1 8.1815 -1.0034 -2.5932 39 1 11.6923 0.1059 -2.4990 40 1 1.6057 -1.7215 -1.2980 41 1 1.7633 -0.1578 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263381314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -135.719509 kcal Electronic energy + Delta-G solvation = -22810.889720 eV Core-core repulsion = 19304.192697 eV Total energy + Delta-G solvation = -3506.697022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00866 -39.91024 -37.77662 -36.35876 -34.93865 -33.97014 -32.70902 -32.46783 -29.57825 -27.03038 -25.85971 -24.86174 -24.16762 -21.36291 -20.99883 -20.50287 -19.52009 -18.27032 -18.01168 -16.66251 -16.58065 -16.22014 -15.77106 -15.20717 -15.04445 -14.52779 -14.44597 -14.02565 -13.87311 -13.74186 -13.37767 -12.89602 -12.78850 -12.37041 -12.25689 -12.18278 -11.81349 -11.63757 -11.28491 -11.12086 -11.06484 -11.01565 -10.94553 -10.71012 -10.62298 -10.32436 -9.92084 -9.54718 -9.26126 -8.81843 -8.46884 -8.23507 -6.08679 -4.11255 1.87494 2.60910 2.91913 3.30100 3.36317 3.40802 3.47017 4.14421 4.21376 4.42494 4.43693 4.54714 4.63246 4.83921 5.05514 5.11889 5.24067 5.28543 5.33551 5.37373 5.45407 5.51384 5.65309 5.72021 5.86244 5.90455 6.08074 6.22403 6.25225 6.39534 6.50135 6.76920 6.96942 7.09850 7.55632 7.61296 7.63457 7.90276 8.22657 8.33962 8.89416 8.95926 9.53489 11.02946 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003712 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.031092 B = 7541.903963 C = 8752.399053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.097 4.097 5 C -0.097 4.097 6 H 0.117 0.883 7 C 0.488 3.512 8 O -0.514 6.514 9 O -0.510 6.510 10 C 0.124 3.876 11 N -0.634 5.634 12 C 0.704 3.296 13 O -0.591 6.591 14 N -0.738 5.738 15 C 0.138 3.862 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.132 3.868 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.412 0.588 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.064 0.936 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 -3.532 11.423 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.097 0.903 4 C -0.135 4.135 5 C -0.118 4.118 6 H 0.135 0.865 7 C 0.329 3.671 8 O -0.402 6.402 9 O -0.322 6.322 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.406 3.594 13 O -0.470 6.470 14 N -0.394 5.394 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C 0.009 3.991 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.271 0.729 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.229 0.771 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.213 -3.172 10.548 20.435 hybrid contribution 1.187 -0.120 0.484 1.288 sum -16.025 -3.292 11.032 19.732 Atomic orbital electron populations 1.21725 0.93837 1.02244 1.02260 1.21553 0.96356 1.00390 0.94405 0.90311 1.21508 0.91029 1.02359 0.98600 1.21491 0.98094 1.01899 0.90272 0.86545 1.23290 0.80081 0.76295 0.87425 1.90720 1.56988 1.45168 1.47361 1.84585 1.25910 1.73794 1.47867 1.21450 0.98969 0.96694 0.82962 1.47236 1.06485 1.65813 1.17691 1.15942 0.81977 0.78586 0.82931 1.90886 1.73442 1.54458 1.28194 1.45747 1.04025 1.63878 1.25739 1.21623 0.91459 0.96718 0.88618 1.19326 0.87586 0.97860 0.97686 1.21048 0.91102 1.38557 1.05224 0.92214 1.24989 0.98125 0.95310 0.95835 1.69955 1.10842 1.44861 1.27646 0.86517 0.79709 0.79184 0.82171 1.20581 1.21199 1.19711 1.21534 0.78266 1.00582 0.98736 0.92329 0.92239 0.92023 0.90585 0.90645 0.72875 0.90811 0.88667 0.77147 0.92636 0.92779 0.95960 0.95964 0.92872 0.91763 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.11 -0.93 2.87 -90.51 -0.26 -1.19 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.10 -0.83 3.75 -26.69 -0.10 -0.93 16 5 C -0.10 -0.89 2.78 -91.65 -0.25 -1.15 16 6 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.49 4.74 7.63 36.01 0.27 5.02 16 8 O -0.51 -6.24 16.74 -18.75 -0.31 -6.56 16 9 O -0.51 -4.21 13.35 -39.26 -0.52 -4.73 16 10 C 0.12 1.27 5.65 -3.71 -0.02 1.25 16 11 N -0.63 -8.20 2.97 -178.50 -0.53 -8.73 16 12 C 0.70 12.29 8.30 -86.92 -0.72 11.57 16 13 O -0.59 -12.52 15.79 5.28 0.08 -12.43 16 14 N -0.74 -13.08 5.47 -65.22 -0.36 -13.43 16 15 C 0.14 2.96 5.62 -4.04 -0.02 2.94 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 21 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.13 1.44 5.70 -3.71 -0.02 1.42 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.41 1.71 9.10 45.56 0.41 2.13 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.00 5.56 -51.93 -0.29 0.71 16 34 H 0.39 6.09 5.93 -40.82 -0.24 5.85 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.23 7.03 -51.93 -0.37 0.87 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -33.91 339.04 -7.67 -41.58 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.51 Total: 2.82 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.34 Total: 5.32 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.15 Total: -47.36 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.75 Total: -23.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.91 -7.67 -41.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263381314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.141 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds