Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49337 * 2 1 4 4 C 1.53040 * 109.52453 * 120.07114 * 2 1 3 5 5 C 1.53040 * 109.53612 * 181.33470 * 4 2 1 6 6 H 1.08995 * 109.52220 * 58.60856 * 5 4 2 7 7 C 1.50704 * 109.49738 * 178.68697 * 5 4 2 8 8 O 1.20825 * 119.99912 * 359.84115 * 7 5 4 9 9 O 1.34231 * 120.00057 * 179.83727 * 7 5 4 10 10 C 1.53193 * 109.31345 * 298.63659 * 5 4 2 11 11 N 1.46928 * 108.77266 * 54.63835 * 10 5 4 12 12 C 1.34773 * 120.62954 * 126.36823 * 11 10 5 13 13 O 1.21592 * 119.99997 * 174.98099 * 12 11 10 14 14 N 1.34782 * 120.00348 * 354.98172 * 12 11 10 15 15 C 1.46495 * 120.00004 * 185.07374 * 14 12 11 16 16 C 1.53006 * 109.46986 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47003 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00368 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99659 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00052 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47019 * 89.99851 * 21 19 17 23 23 H 1.48503 * 109.47242 * 209.99846 * 21 19 17 24 24 H 1.48503 * 109.47260 * 330.00284 * 21 19 17 25 25 C 1.46926 * 118.73985 * 306.38947 * 11 10 5 26 26 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47589 * 300.00072 * 1 2 3 28 28 H 1.08993 * 109.47528 * 60.00572 * 1 2 3 29 29 H 1.08995 * 109.46448 * 301.36238 * 4 2 1 30 30 H 1.09003 * 109.45512 * 61.31730 * 4 2 1 31 31 H 0.96700 * 116.99795 * 180.02562 * 9 7 5 32 32 H 1.08995 * 109.58808 * 294.84843 * 10 5 4 33 33 H 1.09003 * 109.70100 * 174.49345 * 10 5 4 34 34 H 0.96993 * 119.99753 * 5.07489 * 14 12 11 35 35 H 1.09003 * 109.47056 * 299.99710 * 15 14 12 36 36 H 1.08999 * 109.47322 * 60.00027 * 15 14 12 37 37 H 1.09003 * 109.46684 * 299.99569 * 16 15 14 38 38 H 1.08999 * 109.47369 * 59.99687 * 16 15 14 39 39 H 0.97005 * 120.00122 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.58612 * 293.82262 * 25 11 10 41 41 H 1.08997 * 109.58724 * 173.40209 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7228 1.2483 5 6 3.5715 -0.6939 1.2655 6 1 3.9164 0.3400 1.2538 7 6 4.0735 -1.3776 2.5112 8 8 3.2883 -1.8381 3.3057 9 8 5.3929 -1.4750 2.7380 10 6 4.1060 -1.4253 0.0301 11 7 3.5047 -0.8280 -1.1701 12 6 4.2807 -0.3841 -2.1785 13 8 3.7705 0.0240 -3.2040 14 7 5.6224 -0.3926 -2.0505 15 6 6.4620 0.1917 -3.0992 16 6 7.9351 0.0519 -2.7101 17 6 8.7988 0.6535 -3.7886 18 1 8.3427 1.0913 -4.6643 19 6 10.1713 0.6449 -3.6575 20 7 10.7267 0.1122 -2.5911 21 14 11.2420 1.3899 -4.9947 22 1 11.4715 2.8275 -4.7015 23 1 12.5453 0.6794 -5.0386 24 1 10.5602 1.2552 -6.3071 25 6 2.0413 -0.7234 -1.2497 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6588 -0.2244 2.1389 30 1 1.6979 -1.7571 1.2353 31 1 5.6668 -1.9224 3.5503 32 1 3.8388 -2.4806 0.0862 33 1 5.1904 -1.3249 -0.0158 34 1 6.0320 -0.7855 -1.2640 35 1 6.2840 -0.3298 -4.0397 36 1 6.2153 1.2469 -3.2164 37 1 8.1135 0.5731 -1.7695 38 1 8.1815 -1.0034 -2.5932 39 1 11.6923 0.1059 -2.4990 40 1 1.6057 -1.7215 -1.2980 41 1 1.7633 -0.1578 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263381314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -159.037617 kcal Electronic energy + Delta-G solvation = -22811.900869 eV Core-core repulsion = 19304.192697 eV Total energy + Delta-G solvation = -3507.708171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92543 -41.01011 -38.81655 -37.12650 -36.61892 -35.17448 -34.45243 -33.35469 -31.39674 -27.85894 -27.14623 -25.94934 -25.52263 -22.97212 -21.94636 -21.57089 -20.61484 -19.22843 -19.02419 -18.48512 -17.50194 -17.38666 -16.90126 -16.52386 -16.43378 -15.91179 -15.35021 -15.29702 -15.15075 -14.96813 -14.26671 -14.25704 -14.11167 -13.64209 -13.22623 -13.04912 -12.92706 -12.88151 -12.55002 -12.50828 -12.36490 -12.22537 -12.01597 -11.88176 -11.70592 -11.61530 -11.49404 -11.42846 -11.12833 -10.58300 -10.18610 -9.54819 -8.21793 -6.31777 1.09158 1.43608 1.44091 1.54532 1.59406 2.06932 2.10799 2.42634 2.95215 3.13192 3.43768 3.63191 3.81179 3.86384 4.07949 4.30256 4.37502 4.40153 4.49175 4.53900 4.62079 4.68633 4.70120 4.83822 4.88273 4.91085 5.05343 5.17043 5.29623 5.31596 5.36586 5.49818 5.54817 5.59901 5.61679 5.79930 5.89126 6.19349 6.81126 6.93821 6.97215 7.37376 7.52265 8.90061 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003712 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.031092 B = 7541.903963 C = 8752.399053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.092 4.092 5 C -0.094 4.094 6 H 0.118 0.882 7 C 0.497 3.503 8 O -0.539 6.539 9 O -0.512 6.512 10 C 0.121 3.879 11 N -0.624 5.624 12 C 0.703 3.297 13 O -0.632 6.632 14 N -0.734 5.734 15 C 0.159 3.841 16 C 0.024 3.976 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.009 3.991 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.267 1.267 25 C 0.128 3.872 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.430 0.570 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.404 0.596 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 -3.686 12.026 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.129 4.129 5 C -0.114 4.114 6 H 0.136 0.864 7 C 0.339 3.661 8 O -0.429 6.429 9 O -0.325 6.325 10 C -0.002 4.002 11 N -0.361 5.361 12 C 0.404 3.596 13 O -0.514 6.514 14 N -0.391 5.391 15 C 0.035 3.965 16 C -0.013 4.013 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.191 1.191 25 C 0.005 3.995 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.292 0.708 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.242 0.758 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.715 -3.351 11.213 21.232 hybrid contribution 1.329 -0.112 0.365 1.382 sum -16.387 -3.464 11.578 20.361 Atomic orbital electron populations 1.21708 0.92241 1.03021 1.02744 1.21465 0.97552 0.99484 0.93241 0.91191 1.21473 0.90366 1.02575 0.98505 1.21447 0.98658 1.01750 0.89532 0.86400 1.23207 0.80229 0.75588 0.87058 1.90719 1.57641 1.46286 1.48208 1.84553 1.25073 1.73796 1.49108 1.21611 0.98776 0.97610 0.82203 1.47228 1.07058 1.64553 1.17243 1.16028 0.81765 0.78459 0.83344 1.90857 1.74060 1.56288 1.30162 1.45446 1.04216 1.64053 1.25395 1.21104 0.90098 0.96268 0.89030 1.19123 0.89323 0.96398 0.96472 1.21459 0.92070 1.38949 1.05960 0.92294 1.25840 0.99477 0.95615 0.98092 1.70053 1.11354 1.45771 1.29329 0.85466 0.77820 0.78523 0.79358 1.19781 1.20580 1.19107 1.21740 0.76891 1.01677 0.99165 0.91418 0.91253 0.92081 0.90069 0.90266 0.70797 0.89049 0.88935 0.75792 0.93824 0.93641 0.97214 0.97360 0.92569 0.89922 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 2 C -0.10 -1.53 2.87 -10.72 -0.03 -1.56 16 3 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.09 -1.37 3.75 30.62 0.11 -1.25 16 5 C -0.09 -1.56 2.78 -11.46 -0.03 -1.59 16 6 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 7 C 0.50 8.74 7.63 71.24 0.54 9.28 16 8 O -0.54 -12.10 16.74 21.97 0.37 -11.73 16 9 O -0.51 -7.49 13.35 -51.42 -0.69 -8.17 16 10 C 0.12 2.30 5.65 86.36 0.49 2.79 16 11 N -0.62 -15.54 2.97 -836.92 -2.49 -18.03 16 12 C 0.70 24.45 8.30 179.05 1.49 25.94 16 13 O -0.63 -27.11 15.79 -4.01 -0.06 -27.17 16 14 N -0.73 -26.05 5.47 -478.52 -2.62 -28.67 16 15 C 0.16 6.91 5.62 86.38 0.49 7.40 16 16 C 0.02 1.22 5.09 29.85 0.15 1.38 16 17 C -0.55 -30.37 9.11 25.60 0.23 -30.14 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.01 0.48 5.46 84.66 0.46 0.94 16 20 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 21 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.13 2.63 5.70 86.36 0.49 3.13 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 30 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.43 2.76 9.10 -74.06 -0.67 2.08 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.82 5.56 -2.39 -0.01 1.80 16 34 H 0.40 12.40 5.93 -92.71 -0.55 11.85 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.95 7.03 -2.39 -0.02 1.93 16 Total: -1.00 -72.08 339.04 1.70 -70.38 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.18 Total: 16.19 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 5.06 Total: 15.32 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -4.82 Total: -100.20 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.38 Total: -47.08 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -72.08 1.70 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263381314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.663 kcal (2) G-P(sol) polarization free energy of solvation -72.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds