Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49813 * 2 1 4 4 C 1.53037 * 109.49729 * 239.90010 * 2 1 3 5 5 C 1.53047 * 109.53510 * 178.68366 * 4 2 1 6 6 H 1.08991 * 109.50025 * 301.41209 * 5 4 2 7 7 C 1.50705 * 109.49522 * 181.35049 * 5 4 2 8 8 O 1.20828 * 119.99876 * 359.97438 * 7 5 4 9 9 O 1.34225 * 119.99951 * 180.02562 * 7 5 4 10 10 C 1.52765 * 109.38290 * 61.24541 * 5 4 2 11 11 N 1.46923 * 109.00433 * 305.58439 * 10 5 4 12 12 C 1.34777 * 120.62846 * 233.58457 * 11 10 5 13 13 O 1.21585 * 120.00124 * 4.95154 * 12 11 10 14 14 N 1.34785 * 119.99959 * 184.94988 * 12 11 10 15 15 C 1.46495 * 119.99904 * 175.02049 * 14 12 11 16 16 C 1.52999 * 109.46949 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.47110 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00062 * 359.72109 * 17 16 15 19 19 C 1.37879 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99738 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47366 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47085 * 120.00037 * 21 19 17 24 24 H 1.48507 * 109.46762 * 239.99271 * 21 19 17 25 25 C 1.46925 * 118.73937 * 53.31020 * 11 10 5 26 26 H 1.09003 * 109.47100 * 299.93886 * 1 2 3 27 27 H 1.09006 * 109.46743 * 59.93525 * 1 2 3 28 28 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46182 * 298.70459 * 4 2 1 30 30 H 1.09001 * 109.46323 * 58.66884 * 4 2 1 31 31 H 0.96703 * 117.00273 * 180.02562 * 9 7 5 32 32 H 1.09004 * 109.50898 * 185.70402 * 10 5 4 33 33 H 1.09001 * 109.43402 * 65.41767 * 10 5 4 34 34 H 0.96997 * 119.99542 * 355.01177 * 14 12 11 35 35 H 1.09003 * 109.47107 * 59.99702 * 15 14 12 36 36 H 1.09002 * 109.47184 * 299.99861 * 15 14 12 37 37 H 1.08995 * 109.47606 * 59.99637 * 16 15 14 38 38 H 1.08999 * 109.47302 * 299.99474 * 16 15 14 39 39 H 0.96995 * 120.00107 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.58835 * 66.43294 * 25 11 10 41 41 H 1.09005 * 109.59015 * 186.85586 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5709 -0.6954 -1.2657 6 1 3.9159 0.3384 -1.2541 7 6 4.0722 -1.3790 -2.5117 8 8 3.2865 -1.8419 -3.3045 9 8 5.3913 -1.4746 -2.7403 10 6 4.1055 -1.4217 -0.0326 11 7 3.5046 -0.8288 1.1699 12 6 4.2811 -0.3850 2.1781 13 8 5.4913 -0.3901 2.0609 14 7 3.7161 0.0645 3.3163 15 6 4.5595 0.4443 4.4523 16 6 3.6754 0.9155 5.6087 17 6 4.5430 1.3067 6.7772 18 1 5.6173 1.2230 6.7041 19 6 3.9650 1.7657 7.9418 20 7 2.6566 1.8624 8.0328 21 14 5.0404 2.2500 9.3904 22 1 6.4684 2.0492 9.0358 23 1 4.8087 3.6785 9.7232 24 1 4.6989 1.4067 10.5641 25 6 2.0413 -0.7234 1.2498 26 1 -0.3633 0.5129 0.8906 27 1 -0.3633 0.5149 -0.8895 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6967 -1.7576 -1.2347 30 1 1.6582 -0.2252 -2.1388 31 1 5.6649 -1.9214 -3.5531 32 1 5.1896 -1.3160 0.0105 33 1 3.8412 -2.4775 -0.0906 34 1 2.7512 0.1366 3.3830 35 1 5.2290 1.2511 4.1541 36 1 5.1473 -0.4162 4.7721 37 1 3.0062 0.1084 5.9067 38 1 3.0873 1.7758 5.2893 39 1 2.2499 2.1849 8.8522 40 1 1.6051 -1.7212 1.2986 41 1 1.7637 -0.1572 2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263381315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = -136.202384 kcal Electronic energy + Delta-G solvation = -22663.575207 eV Core-core repulsion = 19156.857246 eV Total energy + Delta-G solvation = -3506.717961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01999 -39.94039 -37.79713 -36.39729 -34.98490 -33.59917 -33.19032 -32.40443 -29.47594 -27.02125 -25.80907 -25.20408 -23.91755 -21.35745 -21.05392 -20.52845 -19.53017 -18.32227 -17.98916 -16.70581 -16.51604 -16.27368 -15.82337 -15.22395 -14.94901 -14.58279 -14.43244 -14.08581 -13.79765 -13.73207 -13.42658 -12.88048 -12.76356 -12.39049 -12.30960 -12.24692 -11.85250 -11.62194 -11.28472 -11.11999 -11.04296 -10.98459 -10.95845 -10.78657 -10.61572 -10.33974 -9.91330 -9.55988 -9.25453 -8.81535 -8.48147 -8.24158 -6.09864 -4.12290 1.84838 2.58231 2.93085 3.28396 3.36145 3.41531 3.47073 4.13911 4.28812 4.42080 4.48196 4.50171 4.60671 4.87203 5.00567 5.13181 5.25504 5.27524 5.30369 5.41746 5.47016 5.54798 5.64481 5.69373 5.82904 5.89546 6.06222 6.18895 6.23978 6.38900 6.46518 6.76205 6.96737 7.09815 7.54677 7.58169 7.62118 7.89372 8.22269 8.33597 8.89301 8.95371 9.52603 11.01874 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029080 B = 0.003187 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.645381 B = 8782.481123 C = 9611.027479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.080 0.920 4 C -0.098 4.098 5 C -0.098 4.098 6 H 0.115 0.885 7 C 0.490 3.510 8 O -0.515 6.515 9 O -0.511 6.511 10 C 0.143 3.857 11 N -0.634 5.634 12 C 0.704 3.296 13 O -0.592 6.592 14 N -0.737 5.737 15 C 0.138 3.862 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.112 3.888 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.410 0.590 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -6.016 -20.372 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.098 0.902 4 C -0.135 4.135 5 C -0.118 4.118 6 H 0.133 0.867 7 C 0.331 3.669 8 O -0.403 6.403 9 O -0.322 6.322 10 C 0.018 3.982 11 N -0.372 5.372 12 C 0.405 3.595 13 O -0.471 6.471 14 N -0.392 5.392 15 C 0.016 3.984 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.011 4.011 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.269 0.731 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.207 -5.903 -20.111 21.203 hybrid contribution 0.102 0.077 0.255 0.285 sum -3.105 -5.827 -19.856 20.925 Atomic orbital electron populations 1.21757 0.93668 1.02379 1.02489 1.21532 0.96498 1.00321 0.94262 0.90187 1.21509 0.91207 1.02330 0.98467 1.21435 0.97857 1.01974 0.90555 0.86736 1.23301 0.79954 0.76235 0.87384 1.90720 1.56911 1.45154 1.47505 1.84592 1.26151 1.73841 1.47653 1.21120 1.00526 0.95380 0.81124 1.47198 1.05894 1.65986 1.18172 1.15936 0.85102 0.78182 0.80253 1.90889 1.12204 1.62495 1.81477 1.45718 1.10598 1.69239 1.13681 1.21623 0.93636 0.98915 0.84243 1.19327 0.95192 0.96707 0.91243 1.21090 0.93391 1.43672 0.97680 0.92143 1.24995 0.95037 0.95507 0.98778 1.69962 1.09238 1.46728 1.27423 0.86458 0.80790 0.78123 0.82212 1.19551 1.20950 1.20963 1.21768 0.80001 1.00967 0.98380 0.91820 0.92156 0.92241 0.90620 0.90596 0.73123 0.87394 0.91464 0.77153 0.92625 0.92774 0.95997 0.95981 0.92921 0.91070 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.11 -0.88 2.87 -90.50 -0.26 -1.14 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.10 -0.83 3.75 -26.69 -0.10 -0.93 16 5 C -0.10 -0.92 2.76 -91.87 -0.25 -1.18 16 6 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 7 C 0.49 4.74 7.63 36.01 0.27 5.01 16 8 O -0.51 -6.16 16.74 -18.75 -0.31 -6.48 16 9 O -0.51 -4.06 13.35 -39.24 -0.52 -4.58 16 10 C 0.14 1.61 5.63 -3.93 -0.02 1.58 16 11 N -0.63 -8.18 2.98 -178.76 -0.53 -8.71 16 12 C 0.70 12.26 8.30 -86.91 -0.72 11.54 16 13 O -0.59 -12.52 15.77 5.29 0.08 -12.44 16 14 N -0.74 -12.99 5.47 -65.22 -0.36 -13.34 16 15 C 0.14 2.95 5.62 -4.04 -0.02 2.93 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.11 1.11 5.67 -3.71 -0.02 1.09 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.66 8.13 -51.93 -0.42 0.23 16 30 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.41 1.43 9.10 45.56 0.41 1.85 16 32 H 0.11 1.42 6.99 -51.93 -0.36 1.05 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 6.00 5.96 -40.82 -0.24 5.75 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.85 5.65 -51.93 -0.29 0.56 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -33.92 339.04 -7.67 -41.59 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.52 Total: 2.46 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.34 Total: 5.32 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.15 Total: -47.21 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.75 Total: -23.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.92 -7.67 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263381315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.609 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds