Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49813 * 2 1 4 4 C 1.53037 * 109.49729 * 239.90010 * 2 1 3 5 5 C 1.53047 * 109.53510 * 178.68366 * 4 2 1 6 6 H 1.08991 * 109.50025 * 301.41209 * 5 4 2 7 7 C 1.50705 * 109.49522 * 181.35049 * 5 4 2 8 8 O 1.20828 * 119.99876 * 359.97438 * 7 5 4 9 9 O 1.34225 * 119.99951 * 180.02562 * 7 5 4 10 10 C 1.52765 * 109.38290 * 61.24541 * 5 4 2 11 11 N 1.46923 * 109.00433 * 305.58439 * 10 5 4 12 12 C 1.34777 * 120.62846 * 233.58457 * 11 10 5 13 13 O 1.21585 * 120.00124 * 4.95154 * 12 11 10 14 14 N 1.34785 * 119.99959 * 184.94988 * 12 11 10 15 15 C 1.46495 * 119.99904 * 175.02049 * 14 12 11 16 16 C 1.52999 * 109.46949 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.47110 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00062 * 359.72109 * 17 16 15 19 19 C 1.37879 * 120.00013 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99738 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47366 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47085 * 120.00037 * 21 19 17 24 24 H 1.48507 * 109.46762 * 239.99271 * 21 19 17 25 25 C 1.46925 * 118.73937 * 53.31020 * 11 10 5 26 26 H 1.09003 * 109.47100 * 299.93886 * 1 2 3 27 27 H 1.09006 * 109.46743 * 59.93525 * 1 2 3 28 28 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46182 * 298.70459 * 4 2 1 30 30 H 1.09001 * 109.46323 * 58.66884 * 4 2 1 31 31 H 0.96703 * 117.00273 * 180.02562 * 9 7 5 32 32 H 1.09004 * 109.50898 * 185.70402 * 10 5 4 33 33 H 1.09001 * 109.43402 * 65.41767 * 10 5 4 34 34 H 0.96997 * 119.99542 * 355.01177 * 14 12 11 35 35 H 1.09003 * 109.47107 * 59.99702 * 15 14 12 36 36 H 1.09002 * 109.47184 * 299.99861 * 15 14 12 37 37 H 1.08995 * 109.47606 * 59.99637 * 16 15 14 38 38 H 1.08999 * 109.47302 * 299.99474 * 16 15 14 39 39 H 0.96995 * 120.00107 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.58835 * 66.43294 * 25 11 10 41 41 H 1.09005 * 109.59015 * 186.85586 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5709 -0.6954 -1.2657 6 1 3.9159 0.3384 -1.2541 7 6 4.0722 -1.3790 -2.5117 8 8 3.2865 -1.8419 -3.3045 9 8 5.3913 -1.4746 -2.7403 10 6 4.1055 -1.4217 -0.0326 11 7 3.5046 -0.8288 1.1699 12 6 4.2811 -0.3850 2.1781 13 8 5.4913 -0.3901 2.0609 14 7 3.7161 0.0645 3.3163 15 6 4.5595 0.4443 4.4523 16 6 3.6754 0.9155 5.6087 17 6 4.5430 1.3067 6.7772 18 1 5.6173 1.2230 6.7041 19 6 3.9650 1.7657 7.9418 20 7 2.6566 1.8624 8.0328 21 14 5.0404 2.2500 9.3904 22 1 6.4684 2.0492 9.0358 23 1 4.8087 3.6785 9.7232 24 1 4.6989 1.4067 10.5641 25 6 2.0413 -0.7234 1.2498 26 1 -0.3633 0.5129 0.8906 27 1 -0.3633 0.5149 -0.8895 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6967 -1.7576 -1.2347 30 1 1.6582 -0.2252 -2.1388 31 1 5.6649 -1.9214 -3.5531 32 1 5.1896 -1.3160 0.0105 33 1 3.8412 -2.4775 -0.0906 34 1 2.7512 0.1366 3.3830 35 1 5.2290 1.2511 4.1541 36 1 5.1473 -0.4162 4.7721 37 1 3.0062 0.1084 5.9067 38 1 3.0873 1.7758 5.2893 39 1 2.2499 2.1849 8.8522 40 1 1.6051 -1.7212 1.2986 41 1 1.7637 -0.1572 2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263381315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = -159.545212 kcal Electronic energy + Delta-G solvation = -22664.587428 eV Core-core repulsion = 19156.857246 eV Total energy + Delta-G solvation = -3507.730182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92658 -41.03348 -38.82914 -37.15343 -36.64533 -34.95505 -34.52013 -33.59220 -31.27627 -27.75926 -27.14719 -26.32455 -25.25376 -22.91029 -22.03302 -21.56272 -20.63538 -19.24295 -19.01842 -18.48013 -17.54222 -17.34336 -16.93507 -16.52196 -16.46728 -15.83652 -15.43865 -15.23320 -15.16111 -14.91250 -14.34212 -14.25479 -14.06990 -13.62780 -13.24938 -13.06179 -12.94812 -12.93062 -12.57611 -12.49552 -12.35986 -12.23643 -11.95834 -11.79888 -11.70022 -11.63950 -11.59671 -11.39626 -11.10998 -10.59258 -10.17879 -9.54734 -8.22515 -6.32280 1.05667 1.42446 1.43537 1.55196 1.59496 2.05673 2.14245 2.42293 2.97240 3.12563 3.50742 3.67789 3.75369 3.84231 4.08064 4.31522 4.38806 4.45573 4.48878 4.53843 4.62332 4.65947 4.74606 4.81177 4.87993 4.89913 5.06177 5.16205 5.30667 5.31521 5.38904 5.49633 5.53235 5.57248 5.61265 5.79441 5.89671 6.18996 6.80879 6.95406 6.95653 7.36957 7.52833 8.89587 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029080 B = 0.003187 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.645381 B = 8782.481123 C = 9611.027479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.092 4.092 5 C -0.093 4.093 6 H 0.114 0.886 7 C 0.498 3.502 8 O -0.538 6.538 9 O -0.512 6.512 10 C 0.142 3.858 11 N -0.624 5.624 12 C 0.702 3.298 13 O -0.633 6.633 14 N -0.733 5.733 15 C 0.159 3.841 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.106 3.894 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.429 0.571 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.090 0.910 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -6.281 -20.954 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.129 4.129 5 C -0.113 4.113 6 H 0.132 0.868 7 C 0.341 3.659 8 O -0.428 6.428 9 O -0.326 6.326 10 C 0.019 3.981 11 N -0.361 5.361 12 C 0.403 3.597 13 O -0.515 6.515 14 N -0.389 5.389 15 C 0.035 3.965 16 C -0.013 4.013 17 C -0.583 4.583 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.016 4.016 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.292 0.708 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.243 0.757 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.700 -6.187 -20.744 21.961 hybrid contribution 0.244 0.126 0.357 0.451 sum -3.456 -6.061 -20.387 21.547 Atomic orbital electron populations 1.21736 0.92224 1.03079 1.02904 1.21465 0.97536 0.99595 0.93235 0.90846 1.21482 0.90239 1.02585 0.98639 1.21367 0.98630 1.01641 0.89661 0.86797 1.23179 0.80190 0.75575 0.86974 1.90718 1.57557 1.46210 1.48281 1.84559 1.25190 1.73838 1.48997 1.21195 0.99442 0.96415 0.81092 1.47189 1.06986 1.64593 1.17344 1.16026 0.84833 0.78045 0.80758 1.90859 1.14179 1.64130 1.82336 1.45410 1.10873 1.69533 1.13110 1.21100 0.93020 0.97951 0.84419 1.19123 0.94845 0.95614 0.91718 1.21489 0.93770 1.44041 0.99014 0.92326 1.25844 0.96362 0.95332 1.01554 1.70056 1.10767 1.47322 1.28395 0.85409 0.79101 0.77950 0.78665 1.19003 1.20268 1.20269 1.22051 0.77898 1.02389 0.99305 0.91784 0.91416 0.91409 0.90295 0.90087 0.70849 0.89401 0.89847 0.75712 0.93796 0.93750 0.97241 0.97283 0.92561 0.89162 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.95 16 2 C -0.10 -1.44 2.87 -10.72 -0.03 -1.47 16 3 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.09 -1.37 3.75 30.62 0.11 -1.25 16 5 C -0.09 -1.62 2.76 -11.60 -0.03 -1.65 16 6 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.50 8.89 7.63 71.24 0.54 9.44 16 8 O -0.54 -12.01 16.74 21.96 0.37 -11.64 16 9 O -0.51 -7.38 13.35 -51.36 -0.69 -8.07 16 10 C 0.14 3.05 5.63 86.22 0.49 3.54 16 11 N -0.62 -15.52 2.98 -837.72 -2.49 -18.01 16 12 C 0.70 24.39 8.30 179.05 1.49 25.87 16 13 O -0.63 -27.15 15.77 -3.98 -0.06 -27.22 16 14 N -0.73 -25.84 5.47 -478.53 -2.62 -28.45 16 15 C 0.16 6.90 5.62 86.38 0.49 7.39 16 16 C 0.02 1.23 5.09 29.85 0.15 1.38 16 17 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.93 -53.67 13.29 21.45 0.28 -53.39 16 21 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 C 0.11 1.90 5.67 86.36 0.49 2.39 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 31 H 0.43 2.27 9.10 -74.05 -0.67 1.60 16 32 H 0.09 2.29 6.99 -2.38 -0.02 2.28 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.40 12.21 5.96 -92.71 -0.55 11.66 16 35 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.08 1.55 5.65 -2.38 -0.01 1.54 16 Total: -1.00 -72.12 339.04 1.69 -70.43 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -0.18 Total: 15.41 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 5.05 Total: 15.54 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -4.83 Total: -99.85 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.38 Total: -46.92 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.12 1.69 -70.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263381315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.114 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds