Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.47044 * 2 1 4 4 C 1.34643 * 116.99848 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00232 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99881 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00120 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47134 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.46933 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47181 * 180.02562 * 9 8 7 11 11 O 1.21297 * 119.99768 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00201 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00206 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00390 * 225.28291 * 13 12 10 15 15 C 1.38951 * 119.99809 * 45.27851 * 13 12 10 16 16 N 1.31421 * 119.99771 * 197.85631 * 15 13 12 17 17 Si 1.86797 * 120.00273 * 17.86176 * 15 13 12 18 18 H 1.48506 * 109.47063 * 266.07371 * 17 15 13 19 19 H 1.48499 * 109.46781 * 26.06944 * 17 15 13 20 20 H 1.48494 * 109.47409 * 146.07053 * 17 15 13 21 21 C 1.46497 * 119.99894 * 359.97438 * 12 10 9 22 22 C 1.53002 * 117.49884 * 183.22237 * 21 12 10 23 23 C 1.52998 * 59.99946 * 252.50796 * 22 21 12 24 24 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46994 * 299.99343 * 1 2 3 26 26 H 1.08991 * 109.47514 * 59.99542 * 1 2 3 27 27 H 1.09000 * 109.46994 * 240.00656 * 2 1 3 28 28 H 1.08996 * 109.47358 * 120.00924 * 2 1 3 29 29 H 0.97003 * 119.99731 * 0.02562 * 6 4 3 30 30 H 1.08999 * 109.46773 * 59.99990 * 7 6 4 31 31 H 1.09001 * 109.46637 * 300.00148 * 7 6 4 32 32 H 1.09001 * 109.46646 * 59.99927 * 8 7 6 33 33 H 1.08992 * 109.47095 * 300.00350 * 8 7 6 34 34 H 1.09004 * 109.47293 * 59.99990 * 9 8 7 35 35 H 1.09005 * 109.47224 * 300.00275 * 9 8 7 36 36 H 0.96999 * 119.99871 * 179.97438 * 16 15 13 37 37 H 1.09007 * 115.55159 * 328.92893 * 21 12 10 38 38 H 1.09001 * 117.49684 * 359.97438 * 22 21 12 39 39 H 1.09002 * 117.49991 * 145.02371 * 22 21 12 40 40 H 1.08998 * 117.50144 * 252.50895 * 23 22 21 41 41 H 1.09002 * 117.51500 * 107.47874 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3487 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8639 2.7908 0.0011 7 6 5.3163 2.9828 0.0011 8 6 5.6328 4.4797 0.0011 9 6 7.1496 4.6801 0.0018 10 6 7.4614 6.1545 0.0025 11 8 6.5592 6.9652 0.0020 12 7 8.7428 6.5723 0.0026 13 6 9.0265 7.9136 0.0027 14 1 9.7822 8.3058 -0.6618 15 6 8.3418 8.7684 0.8577 16 7 8.3425 10.0630 0.6316 17 14 7.4204 8.0776 2.3285 18 1 6.0006 7.8469 1.9593 19 1 8.0396 6.7926 2.7414 20 1 7.4885 9.0441 3.4538 21 6 9.8325 5.5931 0.0027 22 6 11.2636 6.1288 0.0791 23 6 10.7357 5.5412 -1.2312 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8898 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2729 3.5600 0.0015 30 1 5.7437 2.5214 -0.8891 31 1 5.7438 2.5205 0.8909 32 1 5.2052 4.9414 0.8912 33 1 5.2053 4.9415 -0.8887 34 1 7.5775 4.2183 -0.8880 35 1 7.5767 4.2183 0.8920 36 1 7.8642 10.6598 1.2283 37 1 9.6191 4.6523 0.5102 38 1 11.3944 7.2098 0.1289 39 1 11.9921 5.5405 0.6370 40 1 11.1168 4.5663 -1.5352 41 1 10.5189 6.2354 -2.0431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269706663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = -86.947708 kcal Electronic energy + Delta-G solvation = -22314.931240 eV Core-core repulsion = 18810.349122 eV Total energy + Delta-G solvation = -3504.582118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52857 -39.19152 -37.28548 -36.51659 -35.44663 -33.13224 -32.58604 -31.72307 -31.31183 -27.38653 -24.73882 -23.45255 -22.14001 -21.74570 -21.39319 -21.20402 -19.33583 -18.65366 -17.15636 -16.91410 -16.73436 -16.12652 -15.71897 -15.09533 -15.01139 -14.55630 -14.19628 -13.88775 -13.60451 -13.41980 -13.15987 -13.03966 -12.65387 -12.30449 -11.95589 -11.91614 -11.81263 -11.61143 -11.22506 -11.04493 -10.96050 -10.78749 -10.73019 -10.71693 -10.31752 -10.08150 -9.92904 -9.81957 -9.29687 -8.58952 -8.47578 -7.48098 -6.21484 -4.00683 2.02540 2.71219 3.27723 3.42942 3.59410 3.74437 4.02623 4.32731 4.48031 4.57081 4.65034 4.70056 4.88753 4.99416 5.10678 5.18575 5.25767 5.28457 5.42798 5.46679 5.53440 5.58814 5.62460 5.64575 5.68990 5.81248 5.93352 6.11167 6.13475 6.27025 6.29594 6.32864 6.43830 6.62434 6.85473 7.28839 7.83468 7.97944 8.21046 8.75069 8.90582 9.40798 9.79809 10.84683 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.003441 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.677672 B = 8134.912914 C = 8990.401345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.374 6.374 4 C 0.646 3.354 5 O -0.577 6.577 6 N -0.706 5.706 7 C 0.136 3.864 8 C -0.116 4.116 9 C -0.132 4.132 10 C 0.457 3.543 11 O -0.543 6.543 12 N -0.440 5.440 13 C -0.345 4.345 14 H 0.093 0.907 15 C 0.093 3.907 16 N -0.868 5.868 17 Si 0.906 3.094 18 H -0.256 1.256 19 H -0.279 1.279 20 H -0.306 1.306 21 C 0.063 3.937 22 C -0.172 4.172 23 C -0.199 4.199 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.409 0.591 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.272 0.728 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -17.751 -0.572 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 O -0.288 6.288 4 C 0.399 3.601 5 O -0.466 6.466 6 N -0.365 5.365 7 C 0.014 3.986 8 C -0.154 4.154 9 C -0.173 4.173 10 C 0.247 3.753 11 O -0.425 6.425 12 N -0.161 5.161 13 C -0.471 4.471 14 H 0.110 0.890 15 C -0.116 4.116 16 N -0.503 5.503 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.204 1.204 20 H -0.235 1.235 21 C -0.043 4.043 22 C -0.210 4.210 23 C -0.237 4.237 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.244 0.756 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.292 -17.667 -0.534 19.524 hybrid contribution -0.468 -0.024 0.757 0.890 sum -8.760 -17.691 0.222 19.742 Atomic orbital electron populations 1.21831 0.92609 1.03009 1.03605 1.22928 0.94761 0.78797 1.02759 1.86244 1.22288 1.33178 1.87100 1.18118 0.81021 0.84527 0.76465 1.90990 1.59837 1.39804 1.55973 1.44772 1.08763 1.05296 1.77686 1.21491 0.76984 0.97416 1.02747 1.21523 0.96360 0.92878 1.04637 1.21504 0.95920 0.96355 1.03500 1.20236 0.83671 0.89744 0.81689 1.90559 1.44666 1.55399 1.51904 1.43160 1.02168 1.05500 1.65245 1.18657 1.26026 0.79342 1.23098 0.88980 1.25295 0.94653 0.94508 0.97166 1.69739 1.40493 1.03378 1.36690 0.86434 0.82310 0.77989 0.79678 1.18124 1.20449 1.23457 1.21799 0.86814 0.94544 1.01118 1.23146 0.95380 1.02810 0.99639 1.23284 1.05529 1.01928 0.92997 0.90037 0.91444 0.91435 0.91191 0.91208 0.75563 0.90958 0.91113 0.90542 0.90101 0.89374 0.90043 0.91820 0.87415 0.86993 0.89457 0.89463 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.15 0.38 -0.55 16 2 C 0.08 0.74 6.19 37.15 0.23 0.97 16 3 O -0.37 -4.40 10.27 -40.33 -0.41 -4.82 16 4 C 0.65 8.81 8.75 54.06 0.47 9.29 16 5 O -0.58 -9.42 16.13 -19.28 -0.31 -9.73 16 6 N -0.71 -8.55 5.56 -65.27 -0.36 -8.91 16 7 C 0.14 1.67 5.67 -4.04 -0.02 1.65 16 8 C -0.12 -1.66 4.62 -26.73 -0.12 -1.79 16 9 C -0.13 -2.11 4.32 -27.89 -0.12 -2.23 16 10 C 0.46 10.33 5.87 -10.99 -0.06 10.27 16 11 O -0.54 -14.42 11.81 5.54 0.07 -14.35 16 12 N -0.44 -10.25 2.45 -107.73 -0.26 -10.52 16 13 C -0.35 -9.52 8.35 -14.94 -0.12 -9.64 16 14 H 0.09 2.67 7.47 -52.49 -0.39 2.28 16 15 C 0.09 2.69 4.88 -17.46 -0.09 2.61 16 16 N -0.87 -26.35 13.96 55.50 0.77 -25.58 16 17 Si 0.91 23.73 24.91 -169.99 -4.23 19.49 16 18 H -0.26 -6.93 6.38 56.52 0.36 -6.57 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.31 -7.90 7.11 56.52 0.40 -7.49 16 21 C 0.06 1.14 5.87 -67.93 -0.40 0.75 16 22 C -0.17 -2.92 9.80 -26.73 -0.26 -3.18 16 23 C -0.20 -3.17 10.36 -26.73 -0.28 -3.44 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.41 4.26 8.58 -40.82 -0.35 3.91 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.08 1.21 8.10 -51.93 -0.42 0.78 16 34 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 35 H 0.08 1.17 7.57 -51.93 -0.39 0.77 16 36 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.11 1.65 6.96 -51.93 -0.36 1.28 16 38 H 0.11 2.20 6.74 -51.93 -0.35 1.85 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -34.91 342.02 -6.50 -41.41 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.51 Total: 3.16 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.39 Total: 4.69 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.15 Total: -45.01 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.66 Total: -28.90 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.23 Total: 19.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.91 -6.50 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269706663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.539 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds