Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45195 * 109.47044 * 2 1 4 4 C 1.34643 * 116.99848 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00232 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99881 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00120 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47134 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.46933 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47181 * 180.02562 * 9 8 7 11 11 O 1.21297 * 119.99768 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00201 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00206 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00390 * 225.28291 * 13 12 10 15 15 C 1.38951 * 119.99809 * 45.27851 * 13 12 10 16 16 N 1.31421 * 119.99771 * 197.85631 * 15 13 12 17 17 Si 1.86797 * 120.00273 * 17.86176 * 15 13 12 18 18 H 1.48506 * 109.47063 * 266.07371 * 17 15 13 19 19 H 1.48499 * 109.46781 * 26.06944 * 17 15 13 20 20 H 1.48494 * 109.47409 * 146.07053 * 17 15 13 21 21 C 1.46497 * 119.99894 * 359.97438 * 12 10 9 22 22 C 1.53002 * 117.49884 * 183.22237 * 21 12 10 23 23 C 1.52998 * 59.99946 * 252.50796 * 22 21 12 24 24 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46994 * 299.99343 * 1 2 3 26 26 H 1.08991 * 109.47514 * 59.99542 * 1 2 3 27 27 H 1.09000 * 109.46994 * 240.00656 * 2 1 3 28 28 H 1.08996 * 109.47358 * 120.00924 * 2 1 3 29 29 H 0.97003 * 119.99731 * 0.02562 * 6 4 3 30 30 H 1.08999 * 109.46773 * 59.99990 * 7 6 4 31 31 H 1.09001 * 109.46637 * 300.00148 * 7 6 4 32 32 H 1.09001 * 109.46646 * 59.99927 * 8 7 6 33 33 H 1.08992 * 109.47095 * 300.00350 * 8 7 6 34 34 H 1.09004 * 109.47293 * 59.99990 * 9 8 7 35 35 H 1.09005 * 109.47224 * 300.00275 * 9 8 7 36 36 H 0.96999 * 119.99871 * 179.97438 * 16 15 13 37 37 H 1.09007 * 115.55159 * 328.92893 * 21 12 10 38 38 H 1.09001 * 117.49684 * 359.97438 * 22 21 12 39 39 H 1.09002 * 117.49991 * 145.02371 * 22 21 12 40 40 H 1.08998 * 117.50144 * 252.50895 * 23 22 21 41 41 H 1.09002 * 117.51500 * 107.47874 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3487 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8639 2.7908 0.0011 7 6 5.3163 2.9828 0.0011 8 6 5.6328 4.4797 0.0011 9 6 7.1496 4.6801 0.0018 10 6 7.4614 6.1545 0.0025 11 8 6.5592 6.9652 0.0020 12 7 8.7428 6.5723 0.0026 13 6 9.0265 7.9136 0.0027 14 1 9.7822 8.3058 -0.6618 15 6 8.3418 8.7684 0.8577 16 7 8.3425 10.0630 0.6316 17 14 7.4204 8.0776 2.3285 18 1 6.0006 7.8469 1.9593 19 1 8.0396 6.7926 2.7414 20 1 7.4885 9.0441 3.4538 21 6 9.8325 5.5931 0.0027 22 6 11.2636 6.1288 0.0791 23 6 10.7357 5.5412 -1.2312 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8898 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2729 3.5600 0.0015 30 1 5.7437 2.5214 -0.8891 31 1 5.7438 2.5205 0.8909 32 1 5.2052 4.9414 0.8912 33 1 5.2053 4.9415 -0.8887 34 1 7.5775 4.2183 -0.8880 35 1 7.5767 4.2183 0.8920 36 1 7.8642 10.6598 1.2283 37 1 9.6191 4.6523 0.5102 38 1 11.3944 7.2098 0.1289 39 1 11.9921 5.5405 0.6370 40 1 11.1168 4.5663 -1.5352 41 1 10.5189 6.2354 -2.0431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269706663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = -112.521284 kcal Electronic energy + Delta-G solvation = -22316.040193 eV Core-core repulsion = 18810.349122 eV Total energy + Delta-G solvation = -3505.691072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51663 -40.89604 -38.31936 -37.96323 -36.58322 -34.96853 -33.86335 -33.28072 -32.36112 -28.78576 -26.42139 -24.30279 -23.42143 -23.00323 -22.65721 -22.34634 -21.04337 -19.69563 -18.81010 -17.92332 -17.83597 -17.69299 -17.22981 -16.66480 -16.18639 -15.74456 -15.40297 -15.33370 -14.94488 -14.81268 -14.62686 -14.53857 -13.57293 -13.51834 -13.31663 -13.05816 -12.97968 -12.88050 -12.52258 -12.47362 -12.39040 -12.17563 -12.09091 -11.82116 -11.80476 -11.60819 -11.53556 -11.24867 -10.75233 -10.29028 -10.27469 -9.32173 -8.41083 -6.18408 1.13115 1.23425 1.34849 1.47748 1.68464 1.96345 2.41099 2.66876 2.99259 3.21489 3.24643 3.69533 4.01864 4.03798 4.05195 4.10692 4.12606 4.20483 4.27044 4.35893 4.41182 4.58885 4.60348 4.72193 4.79697 4.91783 4.93127 5.03981 5.09879 5.14354 5.19749 5.28433 5.32707 5.45752 5.48989 5.72460 5.88083 6.32462 6.78674 6.94656 7.23041 7.37834 7.91945 8.68924 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.003441 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.677672 B = 8134.912914 C = 8990.401345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 O -0.376 6.376 4 C 0.645 3.355 5 O -0.606 6.606 6 N -0.701 5.701 7 C 0.146 3.854 8 C -0.106 4.106 9 C -0.122 4.122 10 C 0.448 3.552 11 O -0.591 6.591 12 N -0.458 5.458 13 C -0.334 4.334 14 H 0.061 0.939 15 C 0.039 3.961 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.256 1.256 20 H -0.306 1.306 21 C 0.044 3.956 22 C -0.177 4.177 23 C -0.178 4.178 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.417 0.583 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.152 0.848 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -21.484 -0.149 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 O -0.290 6.290 4 C 0.398 3.602 5 O -0.498 6.498 6 N -0.361 5.361 7 C 0.024 3.976 8 C -0.145 4.145 9 C -0.162 4.162 10 C 0.240 3.760 11 O -0.476 6.476 12 N -0.180 5.180 13 C -0.461 4.461 14 H 0.078 0.922 15 C -0.164 4.164 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.180 1.180 20 H -0.235 1.235 21 C -0.060 4.060 22 C -0.214 4.214 23 C -0.216 4.216 24 H 0.123 0.877 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.169 0.831 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.298 -21.427 -0.113 22.978 hybrid contribution -0.442 1.094 0.488 1.277 sum -8.740 -20.333 0.375 22.135 Atomic orbital electron populations 1.21851 0.90295 1.04560 1.03642 1.23244 0.96542 0.77586 1.02757 1.86269 1.21195 1.34854 1.86727 1.18232 0.81425 0.84415 0.76112 1.90965 1.60604 1.40741 1.57477 1.44748 1.08996 1.05279 1.77060 1.21354 0.77141 0.95593 1.03531 1.21383 0.95354 0.94208 1.03536 1.21519 0.97170 0.91136 1.06369 1.21444 0.82700 0.92465 0.79387 1.90532 1.46061 1.57504 1.53502 1.43381 1.04173 1.04765 1.65652 1.18506 1.24187 0.81951 1.21445 0.92169 1.26002 0.96000 0.94739 0.99704 1.69842 1.42941 1.04623 1.38220 0.85575 0.80242 0.78318 0.77160 1.20015 1.17962 1.23486 1.22235 0.85545 0.94732 1.03521 1.23177 0.95763 1.01225 1.01244 1.23307 1.03663 1.03248 0.91377 0.87708 0.91398 0.91355 0.91214 0.91271 0.74691 0.90065 0.90391 0.91982 0.91118 0.86237 0.87064 0.91968 0.83054 0.90917 0.85577 0.84885 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 71.98 0.74 -0.74 16 2 C 0.07 1.20 6.19 71.98 0.45 1.65 16 3 O -0.38 -8.30 10.27 -55.53 -0.57 -8.87 16 4 C 0.65 16.46 8.75 129.79 1.14 17.59 16 5 O -0.61 -18.72 16.13 19.81 0.32 -18.40 16 6 N -0.70 -15.50 5.56 -590.83 -3.29 -18.79 16 7 C 0.15 3.13 5.67 86.38 0.49 3.62 16 8 C -0.11 -2.79 4.62 30.59 0.14 -2.65 16 9 C -0.12 -3.43 4.32 29.85 0.13 -3.30 16 10 C 0.45 19.57 5.87 87.66 0.51 20.08 16 11 O -0.59 -31.47 11.81 -3.08 -0.04 -31.50 16 12 N -0.46 -20.86 2.45 -613.13 -1.50 -22.36 16 13 C -0.33 -18.85 8.35 84.04 0.70 -18.15 16 14 H 0.06 3.69 7.47 -2.91 -0.02 3.67 16 15 C 0.04 2.32 4.88 84.93 0.41 2.73 16 16 N -0.92 -58.31 13.96 21.66 0.30 -58.01 16 17 Si 0.96 49.72 24.91 68.60 1.71 51.43 16 18 H -0.27 -14.87 6.38 99.48 0.64 -14.24 16 19 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 21 C 0.04 1.44 5.87 44.99 0.26 1.71 16 22 C -0.18 -5.58 9.80 30.59 0.30 -5.28 16 23 C -0.18 -5.10 10.36 30.59 0.32 -4.78 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.42 7.97 8.58 -92.71 -0.80 7.17 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 34 H 0.12 2.69 8.11 -2.38 -0.02 2.67 16 35 H 0.11 2.56 7.57 -2.38 -0.02 2.54 16 36 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 37 H 0.15 3.69 6.96 -2.38 -0.02 3.68 16 38 H 0.07 2.89 6.74 -2.39 -0.02 2.88 16 39 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -79.99 342.02 2.69 -77.30 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.16 Total: 16.72 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 5.59 Total: 12.48 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.48 Total: -99.16 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -0.29 Total: -58.77 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.71 Total: 51.43 kcal Total: -79.99 2.69 -77.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269706663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.226 kcal (2) G-P(sol) polarization free energy of solvation -79.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds