Wall clock time and date at job start Tue Mar 31 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 116.99902 * 2 1 4 4 O 1.21509 * 120.00001 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99885 * 175.12345 * 5 3 2 7 7 H 1.09003 * 109.47431 * 326.95888 * 6 5 3 8 8 C 1.53003 * 109.47023 * 86.96078 * 6 5 3 9 9 C 1.50700 * 109.46972 * 206.95888 * 6 5 3 10 10 O 1.21290 * 120.00419 * 342.56095 * 9 6 5 11 11 N 1.34778 * 119.99942 * 162.55571 * 9 6 5 12 12 C 1.37096 * 119.99903 * 3.72927 * 11 9 6 13 13 H 1.08000 * 120.00001 * 113.02195 * 12 11 9 14 14 C 1.38952 * 119.99967 * 293.01844 * 12 11 9 15 15 N 1.31410 * 119.99924 * 169.19513 * 14 12 11 16 16 Si 1.86800 * 120.00086 * 349.19051 * 14 12 11 17 17 H 1.48499 * 109.47067 * 124.71428 * 16 14 12 18 18 H 1.48502 * 109.47097 * 244.71255 * 16 14 12 19 19 H 1.48502 * 109.47221 * 4.71427 * 16 14 12 20 20 C 1.46508 * 119.99977 * 183.73194 * 11 9 6 21 21 C 1.54266 * 110.02988 * 237.90778 * 20 11 9 22 22 C 1.54962 * 104.16059 * 217.13618 * 21 20 11 23 23 C 1.54891 * 102.77770 * 37.88696 * 22 21 20 24 24 C 1.53874 * 110.03151 * 120.68853 * 20 11 9 25 25 H 1.08999 * 109.47564 * 300.00390 * 1 2 3 26 26 H 1.09003 * 109.46846 * 60.00928 * 1 2 3 27 27 H 1.09004 * 109.47024 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99599 * 355.12648 * 5 3 2 29 29 H 1.09000 * 109.46986 * 56.11045 * 8 6 5 30 30 H 1.08997 * 109.46614 * 176.10270 * 8 6 5 31 31 H 1.08992 * 109.47162 * 296.10544 * 8 6 5 32 32 H 0.97003 * 119.99850 * 179.97438 * 15 14 12 33 33 H 1.08999 * 110.01568 * 359.29494 * 20 11 9 34 34 H 1.09004 * 110.48346 * 335.78364 * 21 20 11 35 35 H 1.08997 * 110.48767 * 98.42553 * 21 20 11 36 36 H 1.08999 * 110.71860 * 279.57917 * 22 21 20 37 37 H 1.09003 * 110.92509 * 156.29492 * 22 21 20 38 38 H 1.08997 * 110.48767 * 203.40620 * 23 22 21 39 39 H 1.08996 * 110.60020 * 80.81662 * 23 22 21 40 40 H 1.08997 * 110.03046 * 238.56571 * 24 20 11 41 41 H 1.08999 * 110.03210 * 359.95384 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0744 2.5709 -0.1073 7 1 3.4747 3.2354 -0.7294 8 6 4.2309 3.1809 1.2871 9 6 5.4340 2.3895 -0.7317 10 8 5.9438 1.2895 -0.7658 11 7 6.0833 3.4496 -1.2523 12 6 5.5421 4.7047 -1.1460 13 1 6.0279 5.4524 -0.5367 14 6 4.3686 5.0149 -1.8224 15 7 3.7352 6.1358 -1.5593 16 14 3.6915 3.8386 -3.1059 17 1 2.2903 3.4857 -2.7636 18 1 3.7263 4.4888 -4.4406 19 1 4.5197 2.6063 -3.1338 20 6 7.3674 3.2606 -1.9318 21 6 8.4572 4.1124 -1.2486 22 6 9.3419 4.6073 -2.4206 23 6 8.3058 4.8870 -3.5375 24 6 7.2713 3.7525 -3.3867 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.9372 0.4597 0.0723 29 1 4.7715 2.4855 1.9292 30 1 4.7870 4.1155 1.2144 31 1 3.2459 3.3761 1.7109 32 1 2.9162 6.3525 -2.0317 33 1 7.6490 2.2078 -1.9114 34 1 8.0089 4.9574 -0.7259 35 1 9.0416 3.5028 -0.5594 36 1 10.0425 3.8314 -2.7292 37 1 9.8730 5.5196 -2.1492 38 1 8.7803 4.8427 -4.5178 39 1 7.8325 5.8572 -3.3873 40 1 7.5071 2.9386 -4.0723 41 1 6.2691 4.1310 -3.5874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270676529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:23 Heat of formation + Delta-G solvation = -114.284722 kcal Electronic energy + Delta-G solvation = -24325.464517 eV Core-core repulsion = 20819.696977 eV Total energy + Delta-G solvation = -3505.767540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27653 -39.40008 -37.29871 -36.20447 -34.45450 -34.23861 -31.88256 -30.28489 -28.13191 -27.37712 -27.09380 -24.82880 -23.69750 -21.23917 -20.26574 -19.72843 -19.09315 -18.82199 -16.91990 -16.66602 -16.18981 -15.95139 -15.53553 -14.68054 -14.50459 -14.41339 -13.91021 -13.79436 -13.44607 -13.27083 -12.86545 -12.69869 -12.28316 -11.94297 -11.87405 -11.50110 -11.37155 -11.26945 -11.08291 -10.82598 -10.67740 -10.56836 -10.54696 -10.40359 -10.22017 -10.11233 -9.96595 -9.76648 -9.25042 -8.86757 -8.62266 -7.50214 -6.50613 -4.45393 2.45517 3.06367 3.16127 3.22524 3.25267 3.51192 4.05459 4.24713 4.68456 4.79559 5.19997 5.24469 5.25077 5.31525 5.43400 5.54705 5.66442 5.86486 5.92943 5.97501 6.12210 6.14573 6.18557 6.23695 6.31112 6.38414 6.41882 6.42812 6.56788 6.62635 6.74940 6.83288 6.91100 6.93112 7.00483 7.63580 7.76297 7.84999 8.37104 8.68500 8.90002 9.09466 9.56745 10.55862 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.006355 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.032737 B = 4405.252160 C = 4817.153441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.376 6.376 3 C 0.643 3.357 4 O -0.567 6.567 5 N -0.693 5.693 6 C 0.148 3.852 7 H 0.117 0.883 8 C -0.144 4.144 9 C 0.499 3.501 10 O -0.590 6.590 11 N -0.460 5.460 12 C -0.353 4.353 13 H 0.102 0.898 14 C 0.085 3.915 15 N -0.852 5.852 16 Si 0.841 3.159 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.255 1.255 20 C 0.130 3.870 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.129 4.129 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.411 0.589 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.277 0.723 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -6.160 0.713 6.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.290 6.290 3 C 0.395 3.605 4 O -0.456 6.456 5 N -0.354 5.354 6 C 0.042 3.958 7 H 0.134 0.866 8 C -0.203 4.203 9 C 0.287 3.713 10 O -0.474 6.474 11 N -0.181 5.181 12 C -0.480 4.480 13 H 0.120 0.880 14 C -0.125 4.125 15 N -0.485 5.485 16 Si 0.666 3.334 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.179 1.179 20 C 0.027 3.973 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.167 4.167 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.248 0.752 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.993 -6.063 0.627 6.175 hybrid contribution -0.554 -0.680 -0.878 1.241 sum 0.439 -6.742 -0.252 6.761 Atomic orbital electron populations 1.23130 0.74994 1.02981 1.02689 1.86229 1.23769 1.31512 1.87496 1.18112 0.83569 0.82058 0.76788 1.91020 1.64568 1.34552 1.55444 1.44606 1.02696 1.11479 1.76607 1.20763 0.92725 0.82467 0.99850 0.86563 1.21928 1.02679 1.02145 0.93522 1.20593 0.87097 0.84936 0.78660 1.90522 1.69253 1.25980 1.61600 1.43592 1.18614 1.06726 1.49134 1.18802 1.08577 0.88844 1.31774 0.88023 1.25684 0.96185 0.95274 0.95354 1.69613 1.16565 1.22992 1.39322 0.87287 0.80344 0.82881 0.82854 1.19613 1.20060 1.17862 1.21738 0.85311 0.99191 0.91064 1.22625 0.95998 1.00409 0.97304 1.22419 0.97180 1.00075 0.96100 1.22255 0.96146 0.99522 0.97464 1.22413 1.00404 0.97500 0.96358 0.91925 0.92047 0.88291 0.75218 0.93100 0.88662 0.92027 0.91185 0.89997 0.89831 0.92616 0.92330 0.92084 0.92794 0.91066 0.92866 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.56 101.05 1.07 1.78 16 2 O -0.38 -6.31 10.62 -40.31 -0.43 -6.74 16 3 C 0.64 13.06 8.72 54.06 0.47 13.53 16 4 O -0.57 -13.16 15.81 -19.28 -0.30 -13.46 16 5 N -0.69 -14.12 5.01 -59.87 -0.30 -14.42 16 6 C 0.15 3.30 1.84 -69.08 -0.13 3.18 16 7 H 0.12 2.92 3.23 -51.93 -0.17 2.76 16 8 C -0.14 -2.89 9.39 37.16 0.35 -2.54 16 9 C 0.50 11.61 5.19 -10.99 -0.06 11.55 16 10 O -0.59 -14.17 15.26 5.55 0.08 -14.08 16 11 N -0.46 -10.47 1.62 -106.54 -0.17 -10.64 16 12 C -0.35 -8.55 6.20 -14.93 -0.09 -8.65 16 13 H 0.10 2.60 7.25 -52.49 -0.38 2.22 16 14 C 0.08 2.17 4.35 -17.47 -0.08 2.10 16 15 N -0.85 -22.88 13.96 55.50 0.77 -22.10 16 16 Si 0.84 20.74 22.50 -169.99 -3.82 16.92 16 17 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.25 -6.38 6.29 56.52 0.36 -6.02 16 20 C 0.13 2.64 3.29 -66.81 -0.22 2.42 16 21 C -0.13 -2.18 6.42 -25.03 -0.16 -2.34 16 22 C -0.12 -1.77 6.91 -24.70 -0.17 -1.94 16 23 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 24 C -0.13 -2.46 6.26 -25.61 -0.16 -2.62 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.41 7.71 7.87 -40.82 -0.32 7.39 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.99 6.85 -51.93 -0.36 1.63 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.08 1.71 6.95 -51.93 -0.36 1.35 16 34 H 0.08 1.58 6.55 -51.93 -0.34 1.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.57 4.27 -51.93 -0.22 1.35 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -29.42 322.08 -4.64 -34.07 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.98 Total: 11.20 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 0.65 Total: 14.42 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.30 Total: -47.17 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.65 Total: -34.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -3.82 Total: 16.92 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.42 -4.64 -34.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270676529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.218 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds