Wall clock time and date at job start Tue Mar 31 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 116.99902 * 2 1 4 4 O 1.21509 * 120.00001 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99885 * 175.12345 * 5 3 2 7 7 H 1.09003 * 109.47431 * 326.95888 * 6 5 3 8 8 C 1.53003 * 109.47023 * 86.96078 * 6 5 3 9 9 C 1.50700 * 109.46972 * 206.95888 * 6 5 3 10 10 O 1.21290 * 120.00419 * 342.56095 * 9 6 5 11 11 N 1.34778 * 119.99942 * 162.55571 * 9 6 5 12 12 C 1.37096 * 119.99903 * 3.72927 * 11 9 6 13 13 H 1.08000 * 120.00001 * 113.02195 * 12 11 9 14 14 C 1.38952 * 119.99967 * 293.01844 * 12 11 9 15 15 N 1.31410 * 119.99924 * 169.19513 * 14 12 11 16 16 Si 1.86800 * 120.00086 * 349.19051 * 14 12 11 17 17 H 1.48499 * 109.47067 * 124.71428 * 16 14 12 18 18 H 1.48502 * 109.47097 * 244.71255 * 16 14 12 19 19 H 1.48502 * 109.47221 * 4.71427 * 16 14 12 20 20 C 1.46508 * 119.99977 * 183.73194 * 11 9 6 21 21 C 1.54266 * 110.02988 * 237.90778 * 20 11 9 22 22 C 1.54962 * 104.16059 * 217.13618 * 21 20 11 23 23 C 1.54891 * 102.77770 * 37.88696 * 22 21 20 24 24 C 1.53874 * 110.03151 * 120.68853 * 20 11 9 25 25 H 1.08999 * 109.47564 * 300.00390 * 1 2 3 26 26 H 1.09003 * 109.46846 * 60.00928 * 1 2 3 27 27 H 1.09004 * 109.47024 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99599 * 355.12648 * 5 3 2 29 29 H 1.09000 * 109.46986 * 56.11045 * 8 6 5 30 30 H 1.08997 * 109.46614 * 176.10270 * 8 6 5 31 31 H 1.08992 * 109.47162 * 296.10544 * 8 6 5 32 32 H 0.97003 * 119.99850 * 179.97438 * 15 14 12 33 33 H 1.08999 * 110.01568 * 359.29494 * 20 11 9 34 34 H 1.09004 * 110.48346 * 335.78364 * 21 20 11 35 35 H 1.08997 * 110.48767 * 98.42553 * 21 20 11 36 36 H 1.08999 * 110.71860 * 279.57917 * 22 21 20 37 37 H 1.09003 * 110.92509 * 156.29492 * 22 21 20 38 38 H 1.08997 * 110.48767 * 203.40620 * 23 22 21 39 39 H 1.08996 * 110.60020 * 80.81662 * 23 22 21 40 40 H 1.08997 * 110.03046 * 238.56571 * 24 20 11 41 41 H 1.08999 * 110.03210 * 359.95384 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0744 2.5709 -0.1073 7 1 3.4747 3.2354 -0.7294 8 6 4.2309 3.1809 1.2871 9 6 5.4340 2.3895 -0.7317 10 8 5.9438 1.2895 -0.7658 11 7 6.0833 3.4496 -1.2523 12 6 5.5421 4.7047 -1.1460 13 1 6.0279 5.4524 -0.5367 14 6 4.3686 5.0149 -1.8224 15 7 3.7352 6.1358 -1.5593 16 14 3.6915 3.8386 -3.1059 17 1 2.2903 3.4857 -2.7636 18 1 3.7263 4.4888 -4.4406 19 1 4.5197 2.6063 -3.1338 20 6 7.3674 3.2606 -1.9318 21 6 8.4572 4.1124 -1.2486 22 6 9.3419 4.6073 -2.4206 23 6 8.3058 4.8870 -3.5375 24 6 7.2713 3.7525 -3.3867 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.9372 0.4597 0.0723 29 1 4.7715 2.4855 1.9292 30 1 4.7870 4.1155 1.2144 31 1 3.2459 3.3761 1.7109 32 1 2.9162 6.3525 -2.0317 33 1 7.6490 2.2078 -1.9114 34 1 8.0089 4.9574 -0.7259 35 1 9.0416 3.5028 -0.5594 36 1 10.0425 3.8314 -2.7292 37 1 9.8730 5.5196 -2.1492 38 1 8.7803 4.8427 -4.5178 39 1 7.8325 5.8572 -3.3873 40 1 7.5071 2.9386 -4.0723 41 1 6.2691 4.1310 -3.5874 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270676529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:23 Heat of formation + Delta-G solvation = -134.888641 kcal Electronic energy + Delta-G solvation = -24326.357970 eV Core-core repulsion = 20819.696977 eV Total energy + Delta-G solvation = -3506.660993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91060 -41.07249 -38.82103 -37.73179 -36.24981 -35.94204 -33.81712 -31.90253 -29.52712 -28.79500 -28.36637 -26.74534 -25.35468 -22.81230 -21.64100 -21.39064 -20.84928 -20.38607 -18.71666 -18.26842 -17.68224 -17.55334 -17.26575 -16.34781 -16.18307 -15.97200 -15.66881 -15.33548 -15.04079 -14.77321 -14.55040 -14.21300 -13.91701 -13.61516 -13.22693 -13.20370 -13.04557 -13.02425 -12.73237 -12.42799 -12.34865 -12.09136 -11.88512 -11.86454 -11.81350 -11.78173 -11.38655 -11.29913 -11.18720 -10.71213 -10.37144 -9.35105 -8.53452 -6.45793 0.96866 1.06519 1.20534 1.22057 1.55032 1.67850 2.05037 2.53928 2.79369 3.21544 3.74181 3.87013 3.90269 4.12758 4.16592 4.19338 4.30589 4.31443 4.57525 4.61011 4.66400 4.72785 4.73853 4.74970 4.80017 4.93622 5.02901 5.06245 5.16945 5.18983 5.24401 5.30051 5.41309 5.44548 5.61095 5.68522 5.94343 6.24639 6.37798 6.92593 7.11385 7.21518 7.66702 8.55688 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.006355 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.032737 B = 4405.252160 C = 4817.153441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.371 6.371 3 C 0.644 3.356 4 O -0.601 6.601 5 N -0.691 5.691 6 C 0.146 3.854 7 H 0.089 0.911 8 C -0.135 4.135 9 C 0.494 3.506 10 O -0.598 6.598 11 N -0.464 5.464 12 C -0.326 4.326 13 H 0.089 0.911 14 C 0.064 3.936 15 N -0.882 5.882 16 Si 0.879 3.121 17 H -0.293 1.293 18 H -0.268 1.268 19 H -0.261 1.261 20 C 0.120 3.880 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.134 4.134 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.145 0.855 28 H 0.419 0.581 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.277 0.723 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -7.295 0.515 7.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.284 6.284 3 C 0.397 3.603 4 O -0.492 6.492 5 N -0.352 5.352 6 C 0.039 3.961 7 H 0.107 0.893 8 C -0.193 4.193 9 C 0.283 3.717 10 O -0.483 6.483 11 N -0.185 5.185 12 C -0.454 4.454 13 H 0.107 0.893 14 C -0.143 4.143 15 N -0.517 5.517 16 Si 0.705 3.295 17 H -0.220 1.220 18 H -0.193 1.193 19 H -0.186 1.186 20 C 0.017 3.983 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.172 4.172 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.257 0.743 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.309 -7.225 0.416 7.597 hybrid contribution -0.986 -0.430 -0.788 1.334 sum 1.323 -7.656 -0.372 7.778 Atomic orbital electron populations 1.23588 0.72480 1.06012 1.02636 1.86254 1.26095 1.29213 1.86835 1.18211 0.83409 0.82617 0.76098 1.90998 1.65241 1.36034 1.56907 1.44490 1.03023 1.11076 1.76590 1.20646 0.91897 0.83143 1.00406 0.89321 1.21838 1.02793 1.01944 0.92726 1.20758 0.87395 0.84928 0.78660 1.90505 1.69638 1.26100 1.62045 1.43721 1.19544 1.06023 1.49259 1.18564 1.07772 0.88852 1.30241 0.89343 1.25913 0.96604 0.95559 0.96206 1.69651 1.17273 1.24194 1.40628 0.86735 0.78407 0.81879 0.82439 1.22023 1.19325 1.18558 1.22010 0.84586 0.99613 0.92044 1.22587 0.95644 0.99390 0.98369 1.22402 0.96647 1.01589 0.93944 1.22239 0.95729 0.97366 0.99655 1.22471 0.99826 0.99085 0.95827 0.91518 0.92681 0.83676 0.74273 0.90846 0.89841 0.92058 0.91209 0.90511 0.91722 0.91312 0.90040 0.90178 0.90007 0.92687 0.91344 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.08 10.56 113.37 1.20 2.27 16 2 O -0.37 -11.94 10.62 -55.45 -0.59 -12.53 16 3 C 0.64 25.95 8.72 129.79 1.13 27.08 16 4 O -0.60 -28.12 15.81 19.81 0.31 -27.81 16 5 N -0.69 -27.85 5.01 -573.72 -2.88 -30.72 16 6 C 0.15 6.53 1.84 44.25 0.08 6.61 16 7 H 0.09 4.54 3.23 -2.39 -0.01 4.53 16 8 C -0.13 -5.37 9.39 71.98 0.68 -4.70 16 9 C 0.49 22.83 5.19 87.66 0.45 23.29 16 10 O -0.60 -28.23 15.26 -3.06 -0.05 -28.27 16 11 N -0.46 -21.05 1.62 -609.36 -0.99 -22.04 16 12 C -0.33 -15.97 6.20 84.04 0.52 -15.44 16 13 H 0.09 4.59 7.25 -2.91 -0.02 4.57 16 14 C 0.06 3.32 4.35 84.93 0.37 3.69 16 15 N -0.88 -48.30 13.96 21.66 0.30 -48.00 16 16 Si 0.88 43.69 22.50 68.60 1.54 45.23 16 17 H -0.29 -15.54 7.11 99.48 0.71 -14.84 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.26 -13.10 6.29 99.48 0.63 -12.48 16 20 C 0.12 4.72 3.29 45.71 0.15 4.87 16 21 C -0.12 -4.00 6.42 31.69 0.20 -3.80 16 22 C -0.11 -2.83 6.91 31.91 0.22 -2.61 16 23 C -0.11 -3.35 6.83 31.67 0.22 -3.13 16 24 C -0.13 -4.92 6.26 31.32 0.20 -4.72 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.42 15.37 7.87 -92.71 -0.73 14.64 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.08 3.51 6.85 -2.39 -0.02 3.49 16 31 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.08 3.09 6.95 -2.39 -0.02 3.07 16 34 H 0.06 2.38 6.55 -2.38 -0.02 2.36 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.04 1.86 4.27 -2.39 -0.01 1.85 16 Total: -1.00 -63.62 322.08 3.32 -60.30 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.24 Total: 30.43 kcal Atomic # 6 Polarization: 27.99 SS G_CDS: 5.42 Total: 33.41 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -3.56 Total: -100.76 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -0.32 Total: -68.60 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.54 Total: 45.23 kcal Total: -63.62 3.32 -60.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270676529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.588 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds