Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48489 * 109.47331 * 240.00382 * 3 2 1 5 5 H 1.48498 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46755 * 119.99986 * 3 2 1 7 7 C 1.37877 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47455 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00532 * 169.99999 * 10 9 7 12 12 C 1.50699 * 109.47312 * 287.84335 * 11 10 9 13 13 C 1.37786 * 120.11221 * 264.60474 * 12 11 10 14 14 C 1.38789 * 120.66741 * 179.97438 * 13 12 11 15 15 C 1.36665 * 120.52947 * 359.97438 * 14 13 12 16 16 C 1.39588 * 119.75942 * 0.02562 * 15 14 13 17 17 C 1.46491 * 134.03066 * 179.97438 * 16 15 14 18 18 C 1.34241 * 106.99931 * 179.97438 * 17 16 15 19 19 N 1.36832 * 109.93506 * 0.02562 * 18 17 16 20 20 H 0.97004 * 125.05786 * 180.02562 * 19 18 17 21 21 C 1.37689 * 109.87694 * 359.76095 * 19 18 17 22 22 C 1.46899 * 110.99934 * 293.95597 * 10 9 7 23 23 C 1.53005 * 109.47343 * 164.08609 * 22 10 9 24 24 C 1.53001 * 117.50057 * 116.52951 * 23 22 10 25 25 C 1.52998 * 117.50147 * 185.19303 * 23 22 10 26 26 H 0.96996 * 119.99966 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46952 * 60.00320 * 9 7 2 28 28 H 1.08996 * 109.47205 * 300.00481 * 9 7 2 29 29 H 1.08997 * 109.46727 * 47.84121 * 11 10 9 30 30 H 1.08996 * 109.47390 * 167.84273 * 11 10 9 31 31 H 1.08002 * 119.66617 * 359.94510 * 13 12 11 32 32 H 1.08007 * 119.73561 * 180.02562 * 14 13 12 33 33 H 1.07993 * 120.11826 * 179.97438 * 15 14 13 34 34 H 1.08002 * 126.50472 * 0.02562 * 17 16 15 35 35 H 1.07997 * 125.03070 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47367 * 44.08708 * 22 10 9 37 37 H 1.09000 * 109.47297 * 284.08436 * 22 10 9 38 38 H 1.08996 * 115.54936 * 330.86028 * 23 22 10 39 39 H 1.08997 * 117.50176 * 215.00243 * 24 23 22 40 40 H 1.09005 * 117.49344 * 0.02761 * 24 23 22 41 41 H 1.08998 * 117.49651 * 359.97438 * 25 23 22 42 42 H 1.08998 * 117.49944 * 144.99751 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5213 -4.8935 0.2376 12 6 1.0848 -4.9688 1.6780 13 6 1.8770 -5.6062 2.6079 14 6 1.4865 -5.6819 3.9376 15 6 0.3082 -5.1244 4.3479 16 6 -0.5098 -4.4738 3.4226 17 6 -1.7999 -3.7854 3.5111 18 6 -2.0987 -3.3516 2.2763 19 7 -1.1058 -3.7063 1.4042 20 1 -1.0983 -3.5028 0.4558 21 6 -0.1162 -4.3899 2.0744 22 6 2.9710 -3.6540 -1.2538 23 6 4.1996 -4.5480 -1.0741 24 6 4.2838 -5.8134 -1.9299 25 6 5.1954 -4.6217 -2.2333 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.6480 -4.9642 -0.4108 30 1 2.2024 -5.7164 0.0209 31 1 2.8110 -6.0518 2.2989 32 1 2.1194 -6.1848 4.6540 33 1 0.0106 -5.1876 5.3841 34 1 -2.3969 -3.6515 4.4010 35 1 -2.9906 -2.8037 2.0107 36 1 3.2908 -2.6452 -1.5153 37 1 2.3439 -4.0542 -2.0504 38 1 4.6011 -4.5973 -0.0620 39 1 4.7407 -6.6953 -1.4809 40 1 3.4641 -6.0088 -2.6214 41 1 4.9750 -4.0336 -3.1242 42 1 6.2519 -4.7195 -1.9838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271178120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = 88.408220 kcal Electronic energy + Delta-G solvation = -22511.650050 eV Core-core repulsion = 19457.813949 eV Total energy + Delta-G solvation = -3053.836100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79697 -37.90945 -36.52132 -35.45365 -32.67348 -31.55323 -29.24668 -28.43716 -27.36112 -26.37245 -23.92665 -22.19417 -21.73584 -21.26545 -20.92587 -19.92644 -19.24676 -17.41780 -16.41698 -15.69871 -15.40738 -15.09476 -14.73780 -14.35056 -14.06004 -13.84745 -13.67846 -13.27758 -12.92105 -12.61272 -12.23576 -12.01516 -11.82281 -11.79194 -11.45427 -11.29577 -11.10403 -10.99775 -10.88070 -10.70068 -10.51933 -10.31752 -10.13945 -9.68514 -9.54241 -9.19011 -9.03407 -8.44748 -7.66237 -7.30281 -7.11487 -6.07290 -4.06076 1.63819 2.19567 3.24456 3.31430 3.35303 3.39171 3.78139 4.10507 4.34396 4.43745 4.86979 5.15041 5.21767 5.24365 5.30098 5.32978 5.38741 5.51153 5.63154 5.72963 5.80132 5.81601 5.87640 5.97977 6.05814 6.11436 6.16627 6.27865 6.31444 6.32670 6.48489 6.48800 6.57469 6.78338 7.03361 7.08437 7.19597 7.23336 7.26074 7.31496 7.71776 7.77444 8.05201 8.10215 8.17324 8.51323 8.99616 9.57478 11.03726 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.007943 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.683636 B = 3524.417082 C = 5627.498931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.180 3.820 10 N -0.526 5.526 11 C 0.094 3.906 12 C -0.067 4.067 13 C -0.094 4.094 14 C -0.150 4.150 15 C -0.083 4.083 16 C -0.111 4.111 17 C -0.223 4.223 18 C 0.065 3.935 19 N -0.579 5.579 20 H 0.419 0.581 21 C 0.114 3.886 22 C 0.091 3.909 23 C -0.133 4.133 24 C -0.192 4.192 25 C -0.183 4.183 26 H 0.261 0.739 27 H -0.019 1.019 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -11.257 1.748 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.055 3.945 10 N -0.250 5.250 11 C -0.034 4.034 12 C -0.070 4.070 13 C -0.114 4.114 14 C -0.169 4.169 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.248 4.248 18 C -0.063 4.063 19 N -0.181 5.181 20 H 0.258 0.742 21 C 0.006 3.994 22 C -0.037 4.037 23 C -0.152 4.152 24 C -0.229 4.229 25 C -0.221 4.221 26 H 0.070 0.930 27 H -0.001 1.001 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.181 0.819 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.632 -10.999 1.978 11.194 hybrid contribution -0.149 1.136 -1.097 1.586 sum 0.483 -9.863 0.881 9.914 Atomic orbital electron populations 1.69901 1.05962 1.26795 1.51184 1.24932 0.94893 0.99166 0.95404 0.86581 0.79497 0.82822 0.78659 1.20346 1.21403 1.20164 1.21099 0.93510 0.89871 1.49875 0.91931 1.20029 0.90659 0.87629 0.96176 1.62109 1.27644 1.02092 1.33191 1.20939 0.96581 0.94345 0.91535 1.18818 0.92084 0.99868 0.96224 1.20537 0.98387 1.00071 0.92411 1.20478 0.97290 1.03312 0.95813 1.20104 0.94203 0.97992 0.97911 1.19151 0.96394 1.03355 0.92655 1.21511 0.97800 1.08544 0.96980 1.21753 0.93886 1.00776 0.89865 1.42096 1.17008 1.47845 1.11157 0.74232 1.18016 0.91520 0.98064 0.91810 1.21597 0.91993 0.99751 0.90357 1.22463 0.98559 0.98032 0.96137 1.23037 1.02794 0.92620 1.04404 1.22904 0.96346 1.02142 1.00695 0.92996 1.00117 0.93216 0.96100 0.90668 0.86376 0.86783 0.86905 0.84344 0.81892 0.89109 0.96277 0.87265 0.89439 0.89433 0.89134 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -13.99 8.28 -34.44 -0.29 -14.27 16 8 H 0.06 1.74 7.25 -52.48 -0.38 1.36 16 9 C 0.18 4.50 3.72 -4.98 -0.02 4.48 16 10 N -0.53 -11.11 4.40 -237.53 -1.04 -12.16 16 11 C 0.09 1.72 5.00 -4.98 -0.02 1.70 16 12 C -0.07 -1.25 5.20 -104.47 -0.54 -1.80 16 13 C -0.09 -1.57 9.65 -39.54 -0.38 -1.95 16 14 C -0.15 -2.32 9.97 -39.95 -0.40 -2.72 16 15 C -0.08 -1.36 10.05 -39.65 -0.40 -1.75 16 16 C -0.11 -2.04 6.37 -105.14 -0.67 -2.71 16 17 C -0.22 -3.71 11.08 -37.67 -0.42 -4.12 16 18 C 0.07 1.08 11.81 -16.73 -0.20 0.89 16 19 N -0.58 -10.81 4.76 -10.65 -0.05 -10.86 16 20 H 0.42 7.90 7.85 -40.82 -0.32 7.58 16 21 C 0.11 2.22 5.66 -83.99 -0.48 1.74 16 22 C 0.09 1.73 5.09 -3.82 -0.02 1.72 16 23 C -0.13 -2.09 4.96 -90.62 -0.45 -2.54 16 24 C -0.19 -2.49 10.08 -26.69 -0.27 -2.76 16 25 C -0.18 -2.45 10.25 -26.69 -0.27 -2.72 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H -0.02 -0.50 8.12 -51.93 -0.42 -0.92 16 28 H 0.05 1.30 4.39 -51.93 -0.23 1.07 16 29 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 30 H 0.07 1.23 6.99 -51.93 -0.36 0.86 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.16 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.09 1.93 6.59 -51.93 -0.34 1.59 16 37 H 0.02 0.36 7.79 -51.93 -0.40 -0.05 16 38 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 1.12 8.03 -51.93 -0.42 0.71 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -30.05 342.18 -11.38 -41.43 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.23 Total: 10.01 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -4.92 Total: -25.32 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.36 Total: -47.96 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.05 -11.38 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271178120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.839 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds