Wall clock time and date at job start Tue Mar 31 2020 06:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48489 * 109.47331 * 240.00382 * 3 2 1 5 5 H 1.48498 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46755 * 119.99986 * 3 2 1 7 7 C 1.37877 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47455 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00532 * 169.99999 * 10 9 7 12 12 C 1.50699 * 109.47312 * 287.84335 * 11 10 9 13 13 C 1.37786 * 120.11221 * 264.60474 * 12 11 10 14 14 C 1.38789 * 120.66741 * 179.97438 * 13 12 11 15 15 C 1.36665 * 120.52947 * 359.97438 * 14 13 12 16 16 C 1.39588 * 119.75942 * 0.02562 * 15 14 13 17 17 C 1.46491 * 134.03066 * 179.97438 * 16 15 14 18 18 C 1.34241 * 106.99931 * 179.97438 * 17 16 15 19 19 N 1.36832 * 109.93506 * 0.02562 * 18 17 16 20 20 H 0.97004 * 125.05786 * 180.02562 * 19 18 17 21 21 C 1.37689 * 109.87694 * 359.76095 * 19 18 17 22 22 C 1.46899 * 110.99934 * 293.95597 * 10 9 7 23 23 C 1.53005 * 109.47343 * 164.08609 * 22 10 9 24 24 C 1.53001 * 117.50057 * 116.52951 * 23 22 10 25 25 C 1.52998 * 117.50147 * 185.19303 * 23 22 10 26 26 H 0.96996 * 119.99966 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46952 * 60.00320 * 9 7 2 28 28 H 1.08996 * 109.47205 * 300.00481 * 9 7 2 29 29 H 1.08997 * 109.46727 * 47.84121 * 11 10 9 30 30 H 1.08996 * 109.47390 * 167.84273 * 11 10 9 31 31 H 1.08002 * 119.66617 * 359.94510 * 13 12 11 32 32 H 1.08007 * 119.73561 * 180.02562 * 14 13 12 33 33 H 1.07993 * 120.11826 * 179.97438 * 15 14 13 34 34 H 1.08002 * 126.50472 * 0.02562 * 17 16 15 35 35 H 1.07997 * 125.03070 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47367 * 44.08708 * 22 10 9 37 37 H 1.09000 * 109.47297 * 284.08436 * 22 10 9 38 38 H 1.08996 * 115.54936 * 330.86028 * 23 22 10 39 39 H 1.08997 * 117.50176 * 215.00243 * 24 23 22 40 40 H 1.09005 * 117.49344 * 0.02761 * 24 23 22 41 41 H 1.08998 * 117.49651 * 359.97438 * 25 23 22 42 42 H 1.08998 * 117.49944 * 144.99751 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5213 -4.8935 0.2376 12 6 1.0848 -4.9688 1.6780 13 6 1.8770 -5.6062 2.6079 14 6 1.4865 -5.6819 3.9376 15 6 0.3082 -5.1244 4.3479 16 6 -0.5098 -4.4738 3.4226 17 6 -1.7999 -3.7854 3.5111 18 6 -2.0987 -3.3516 2.2763 19 7 -1.1058 -3.7063 1.4042 20 1 -1.0983 -3.5028 0.4558 21 6 -0.1162 -4.3899 2.0744 22 6 2.9710 -3.6540 -1.2538 23 6 4.1996 -4.5480 -1.0741 24 6 4.2838 -5.8134 -1.9299 25 6 5.1954 -4.6217 -2.2333 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.6480 -4.9642 -0.4108 30 1 2.2024 -5.7164 0.0209 31 1 2.8110 -6.0518 2.2989 32 1 2.1194 -6.1848 4.6540 33 1 0.0106 -5.1876 5.3841 34 1 -2.3969 -3.6515 4.4010 35 1 -2.9906 -2.8037 2.0107 36 1 3.2908 -2.6452 -1.5153 37 1 2.3439 -4.0542 -2.0504 38 1 4.6011 -4.5973 -0.0620 39 1 4.7407 -6.6953 -1.4809 40 1 3.4641 -6.0088 -2.6214 41 1 4.9750 -4.0336 -3.1242 42 1 6.2519 -4.7195 -1.9838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271178120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:59 Heat of formation + Delta-G solvation = 72.455966 kcal Electronic energy + Delta-G solvation = -22512.341791 eV Core-core repulsion = 19457.813949 eV Total energy + Delta-G solvation = -3054.527842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12212 -39.32265 -37.78541 -36.89112 -34.68879 -32.99145 -30.63979 -29.81710 -29.14535 -27.81597 -25.70340 -23.43535 -23.10043 -22.56982 -22.36537 -21.23210 -20.70048 -18.92915 -18.28343 -17.05904 -16.82139 -16.76448 -16.15489 -15.86748 -15.46240 -15.34370 -14.99317 -14.71981 -14.43874 -13.95768 -13.86800 -13.58351 -13.38860 -13.26136 -13.06877 -12.72070 -12.61867 -12.34105 -12.29955 -12.25464 -12.14298 -11.94334 -11.58165 -11.30266 -11.03885 -10.74703 -10.55747 -10.37923 -9.04838 -8.95425 -8.45563 -8.20258 -6.27048 0.32829 0.88687 1.36528 1.39062 1.46252 1.93446 2.37861 2.44624 2.93909 3.03818 3.12617 3.45407 3.86984 4.00506 4.06607 4.08810 4.11895 4.21449 4.31924 4.41404 4.50026 4.53418 4.65864 4.74597 4.80856 4.85127 4.88936 4.93109 5.05987 5.08045 5.15704 5.21490 5.27635 5.30915 5.37821 5.43991 5.63959 5.75783 5.80447 5.97880 6.00928 6.08192 6.38690 6.43019 6.63596 6.71822 6.85962 7.40144 8.88820 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.007943 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.683636 B = 3524.417082 C = 5627.498931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.197 3.803 10 N -0.533 5.533 11 C 0.103 3.897 12 C -0.096 4.096 13 C -0.095 4.095 14 C -0.149 4.149 15 C -0.087 4.087 16 C -0.137 4.137 17 C -0.226 4.226 18 C 0.050 3.950 19 N -0.591 5.591 20 H 0.411 0.589 21 C 0.084 3.916 22 C 0.096 3.904 23 C -0.154 4.154 24 C -0.170 4.170 25 C -0.174 4.174 26 H 0.262 0.738 27 H -0.048 1.048 28 H 0.040 0.960 29 H 0.011 0.989 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.188 0.812 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -12.287 2.732 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.256 5.256 11 C -0.025 4.025 12 C -0.099 4.099 13 C -0.114 4.114 14 C -0.168 4.168 15 C -0.106 4.106 16 C -0.142 4.142 17 C -0.250 4.250 18 C -0.077 4.077 19 N -0.193 5.193 20 H 0.248 0.752 21 C -0.024 4.024 22 C -0.032 4.032 23 C -0.172 4.172 24 C -0.207 4.207 25 C -0.211 4.211 26 H 0.071 0.929 27 H -0.030 1.030 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.116 0.884 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.184 0.816 35 H 0.205 0.795 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.040 -12.049 2.967 12.575 hybrid contribution -0.584 1.401 -1.386 2.055 sum 1.456 -10.647 1.581 10.862 Atomic orbital electron populations 1.70012 1.07099 1.27537 1.51587 1.25722 0.95801 1.02421 0.95050 0.85611 0.78384 0.78882 0.78792 1.19478 1.20705 1.19998 1.21398 0.93325 0.91483 1.50053 0.92788 1.19680 0.90578 0.88394 0.94221 1.62068 1.26934 1.02389 1.34234 1.20910 0.96399 0.93375 0.91793 1.19028 0.92756 1.01535 0.96621 1.20901 0.98664 0.99100 0.92763 1.20898 0.97337 1.02604 0.95925 1.20524 0.94073 0.97012 0.98958 1.19629 0.97519 1.04304 0.92736 1.21906 0.97519 1.07794 0.97822 1.22300 0.94405 1.01124 0.89911 1.42205 1.17695 1.48373 1.10996 0.75194 1.18431 0.92243 0.98972 0.92791 1.21512 0.93214 0.98986 0.89513 1.22201 0.98090 1.00014 0.96927 1.23111 1.02445 0.92404 1.02748 1.23008 0.97036 1.01934 0.99133 0.92921 1.03044 0.94262 0.97091 0.88419 0.84286 0.83237 0.84114 0.81627 0.79468 0.92270 0.96478 0.87791 0.87129 0.89283 0.89313 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.98 13.29 21.45 0.28 -53.70 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.52 -30.01 8.28 25.60 0.21 -29.80 16 8 H 0.05 3.11 7.25 -2.91 -0.02 3.08 16 9 C 0.20 10.33 3.72 85.56 0.32 10.65 16 10 N -0.53 -23.17 4.40 -905.40 -3.98 -27.15 16 11 C 0.10 3.83 5.00 85.56 0.43 4.25 16 12 C -0.10 -3.62 5.20 -19.77 -0.10 -3.72 16 13 C -0.09 -3.01 9.65 22.29 0.22 -2.79 16 14 C -0.15 -4.24 9.97 22.03 0.22 -4.02 16 15 C -0.09 -2.67 10.05 22.23 0.22 -2.44 16 16 C -0.14 -4.99 6.37 -20.20 -0.13 -5.11 16 17 C -0.23 -7.39 11.08 23.51 0.26 -7.13 16 18 C 0.05 1.67 11.81 83.00 0.98 2.66 16 19 N -0.59 -23.08 4.76 -187.61 -0.89 -23.97 16 20 H 0.41 16.68 7.85 -92.71 -0.73 15.95 16 21 C 0.08 3.32 5.66 39.03 0.22 3.54 16 22 C 0.10 3.75 5.09 86.30 0.44 4.19 16 23 C -0.15 -4.67 4.96 -10.79 -0.05 -4.72 16 24 C -0.17 -3.99 10.08 30.62 0.31 -3.69 16 25 C -0.17 -4.28 10.25 30.62 0.31 -3.97 16 26 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 27 H -0.05 -2.72 8.12 -2.39 -0.02 -2.74 16 28 H 0.04 2.15 4.39 -2.39 -0.01 2.14 16 29 H 0.01 0.42 8.03 -2.39 -0.02 0.40 16 30 H 0.10 3.11 6.99 -2.39 -0.02 3.09 16 31 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.17 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.19 5.07 8.06 -2.91 -0.02 5.04 16 36 H 0.06 2.64 6.59 -2.38 -0.02 2.63 16 37 H 0.02 0.66 7.79 -2.39 -0.02 0.64 16 38 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.09 2.09 8.03 -2.38 -0.02 2.07 16 41 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -66.25 342.18 2.04 -64.20 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.29 Total: 34.73 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.32 Total: -41.14 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -4.59 Total: -104.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.25 2.04 -64.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271178120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.660 kcal (2) G-P(sol) polarization free energy of solvation -66.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds