Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99647 * 2 1 4 4 O 1.20829 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99800 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47172 * 184.26831 * 5 3 2 7 7 H 1.09005 * 109.87493 * 52.94289 * 6 5 3 8 8 C 1.54323 * 110.00816 * 291.85023 * 6 5 3 9 9 C 1.55157 * 102.94264 * 218.31830 * 8 6 5 10 10 C 1.54698 * 101.67840 * 35.33174 * 9 8 6 11 11 N 1.47022 * 109.88457 * 173.96363 * 6 5 3 12 12 C 1.34781 * 125.64510 * 298.47575 * 11 6 5 13 13 O 1.21587 * 120.00012 * 354.85045 * 12 11 6 14 14 N 1.34773 * 119.99407 * 174.85478 * 12 11 6 15 15 C 1.46507 * 119.99639 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46964 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.47234 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99432 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00284 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00040 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47567 * 270.00025 * 21 19 17 23 23 H 1.48497 * 109.46749 * 30.00213 * 21 19 17 24 24 H 1.48502 * 109.46994 * 149.99745 * 21 19 17 25 25 H 1.09001 * 109.47316 * 60.00220 * 1 2 3 26 26 H 1.09002 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47121 * 299.99799 * 1 2 3 28 28 H 1.08996 * 109.47243 * 64.26463 * 5 3 2 29 29 H 1.09000 * 109.47048 * 304.26161 * 5 3 2 30 30 H 1.09006 * 110.72186 * 336.67628 * 8 6 5 31 31 H 1.09003 * 110.72448 * 99.77556 * 8 6 5 32 32 H 1.08996 * 111.00701 * 153.57076 * 9 8 6 33 33 H 1.09000 * 111.00294 * 277.42796 * 9 8 6 34 34 H 1.08997 * 110.39169 * 204.36873 * 10 9 8 35 35 H 1.08999 * 110.23530 * 82.11099 * 10 9 8 36 36 H 0.96994 * 120.00564 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46889 * 59.99932 * 15 14 12 38 38 H 1.09000 * 109.47314 * 300.00128 * 15 14 12 39 39 H 1.09004 * 109.47368 * 60.00232 * 16 15 14 40 40 H 1.09000 * 109.47214 * 300.00194 * 16 15 14 41 41 H 0.96998 * 119.99882 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0003 2.7382 0.1069 7 1 3.5166 3.2062 0.9643 8 6 3.6268 3.4959 -1.1845 9 6 4.8384 4.4420 -1.3951 10 6 6.0105 3.5665 -0.8922 11 7 5.4612 2.8170 0.2523 12 6 6.1788 2.2955 1.2670 13 8 5.6115 1.7808 2.2112 14 7 7.5253 2.3445 1.2348 15 6 8.3054 1.7781 2.3380 16 6 9.7976 1.9629 2.0550 17 6 10.6001 1.3797 3.1895 18 1 10.0961 0.9233 4.0286 19 6 11.9775 1.4297 3.1566 20 7 12.5911 1.9869 2.1355 21 14 12.9722 0.7075 4.5632 22 1 13.2065 1.7526 5.5916 23 1 12.2244 -0.4237 5.1684 24 1 14.2764 0.2192 4.0475 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9521 0.8486 -0.9265 29 1 3.9597 0.7160 0.8485 30 1 3.5269 2.8052 -2.0219 31 1 2.7084 4.0662 -1.0452 32 1 4.9599 4.6928 -2.4488 33 1 4.7404 5.3430 -0.7894 34 1 6.8423 4.1934 -0.5712 35 1 6.3317 2.8804 -1.6759 36 1 7.9779 2.7548 0.4814 37 1 8.0827 0.7152 2.4322 38 1 8.0454 2.2874 3.2660 39 1 10.0206 3.0257 1.9605 40 1 10.0572 1.4533 1.1271 41 1 12.0746 2.3623 1.4053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273578130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = -127.418631 kcal Electronic energy + Delta-G solvation = -22495.932929 eV Core-core repulsion = 18989.595860 eV Total energy + Delta-G solvation = -3506.337069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93828 -40.01032 -37.78628 -36.60697 -35.02283 -33.23203 -32.10696 -31.59644 -29.06691 -28.35085 -26.41446 -24.53593 -23.02903 -21.72709 -21.44062 -20.75326 -19.46445 -18.19653 -17.61058 -17.17954 -16.71184 -16.61183 -15.94238 -15.41729 -14.84489 -14.46602 -14.18021 -13.75667 -13.72715 -13.53698 -13.45482 -13.22441 -12.90362 -12.56369 -12.37953 -12.20550 -12.02943 -11.61899 -11.44007 -11.12031 -11.05734 -11.00440 -10.94443 -10.69221 -10.43402 -10.16918 -10.00385 -9.87563 -8.84601 -8.70206 -8.43813 -8.29858 -6.44272 -4.14040 1.99530 2.34026 2.89277 3.42920 3.43712 3.46295 3.62319 4.15730 4.28664 4.45696 4.55145 4.56887 4.67533 4.82305 4.87144 4.89237 5.03052 5.11365 5.23972 5.34075 5.34210 5.43581 5.56053 5.63155 5.69225 5.81033 6.00046 6.07860 6.14826 6.25697 6.32891 6.61952 6.85181 7.13690 7.33331 7.35478 7.51563 8.07512 8.24686 8.38711 8.79558 8.86634 9.57861 10.96985 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003079 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.387949 B = 9092.642347 C = 9921.757724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.471 3.529 4 O -0.508 6.508 5 C -0.130 4.130 6 C 0.172 3.828 7 H 0.084 0.916 8 C -0.123 4.123 9 C -0.132 4.132 10 C 0.098 3.902 11 N -0.639 5.639 12 C 0.717 3.283 13 O -0.592 6.592 14 N -0.736 5.736 15 C 0.147 3.853 16 C 0.000 4.000 17 C -0.601 4.601 18 H 0.054 0.946 19 C 0.017 3.983 20 N -0.911 5.911 21 Si 1.074 2.926 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.284 1.284 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.392 0.608 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 1.364 -10.840 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.396 6.396 5 C -0.169 4.169 6 C 0.067 3.933 7 H 0.102 0.898 8 C -0.161 4.161 9 C -0.170 4.170 10 C -0.026 4.026 11 N -0.378 5.378 12 C 0.419 3.581 13 O -0.470 6.470 14 N -0.390 5.390 15 C 0.024 3.976 16 C -0.037 4.037 17 C -0.640 4.640 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.547 5.547 21 Si 0.902 3.098 22 H -0.214 1.214 23 H -0.213 1.213 24 H -0.210 1.210 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.861 0.965 -9.485 22.031 hybrid contribution -1.539 0.467 -0.949 1.868 sum -21.400 1.432 -10.434 23.851 Atomic orbital electron populations 1.23263 0.76362 1.03680 1.02520 1.86535 1.23438 1.33555 1.84081 1.23623 0.91889 0.81287 0.71851 1.90650 1.67292 1.36162 1.45489 1.21869 0.87519 1.00615 1.06857 1.21036 0.80178 0.92635 0.99460 0.89815 1.22718 0.99017 0.98469 0.95864 1.22740 0.94067 0.98186 1.01972 1.22253 0.97207 0.94436 0.88658 1.47676 1.06566 1.59417 1.24179 1.15585 0.81955 0.79160 0.81399 1.90894 1.70363 1.51546 1.34197 1.45581 1.03810 1.63610 1.26002 1.21458 0.91797 0.97307 0.87014 1.19454 0.89334 0.96884 0.98057 1.21911 0.93542 1.42176 1.06336 0.92780 1.25886 0.95698 0.95615 1.01494 1.70776 1.39334 1.35862 1.08768 0.83469 0.75611 0.76194 0.74548 1.21361 1.21308 1.20956 0.91929 0.88138 0.91829 0.87479 0.86153 0.90856 0.89052 0.89691 0.90409 0.90537 0.91416 0.77428 0.92486 0.92542 0.96913 0.96870 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.93 10.57 -39.26 -0.41 -4.34 16 3 C 0.47 5.56 7.78 36.00 0.28 5.84 16 4 O -0.51 -6.70 14.52 -18.75 -0.27 -6.97 16 5 C -0.13 -1.51 5.31 -27.88 -0.15 -1.66 16 6 C 0.17 2.07 2.49 -66.95 -0.17 1.91 16 7 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 8 C -0.12 -1.10 5.47 -24.90 -0.14 -1.24 16 9 C -0.13 -1.03 7.07 -24.70 -0.17 -1.21 16 10 C 0.10 0.96 6.46 -2.64 -0.02 0.94 16 11 N -0.64 -8.61 3.07 -168.82 -0.52 -9.13 16 12 C 0.72 12.77 8.20 -86.92 -0.71 12.06 16 13 O -0.59 -12.64 15.51 5.29 0.08 -12.56 16 14 N -0.74 -13.22 5.51 -65.22 -0.36 -13.58 16 15 C 0.15 3.19 5.61 -4.04 -0.02 3.17 16 16 C 0.00 0.00 4.40 -27.88 -0.12 -0.12 16 17 C -0.60 -16.93 9.11 -34.44 -0.31 -17.24 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 20 N -0.91 -27.34 13.65 55.43 0.76 -26.58 16 21 Si 1.07 25.13 29.90 -169.99 -5.08 20.05 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.11 1.03 8.00 -51.93 -0.42 0.62 16 29 H 0.12 1.68 6.85 -51.93 -0.36 1.32 16 30 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 31 H 0.09 0.84 7.67 -51.93 -0.40 0.45 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.74 7.52 -51.93 -0.39 0.35 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 6.10 7.09 -40.82 -0.29 5.82 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 40 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 41 H 0.27 7.91 7.22 -40.82 -0.29 7.62 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -34.09 340.91 -7.61 -41.70 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.38 Total: 2.10 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.56 Total: 4.18 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.12 Total: -49.28 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.60 Total: -23.88 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.09 -7.61 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273578130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.721 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds