Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34230 * 116.99647 * 2 1 4 4 O 1.20829 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99800 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47172 * 184.26831 * 5 3 2 7 7 H 1.09005 * 109.87493 * 52.94289 * 6 5 3 8 8 C 1.54323 * 110.00816 * 291.85023 * 6 5 3 9 9 C 1.55157 * 102.94264 * 218.31830 * 8 6 5 10 10 C 1.54698 * 101.67840 * 35.33174 * 9 8 6 11 11 N 1.47022 * 109.88457 * 173.96363 * 6 5 3 12 12 C 1.34781 * 125.64510 * 298.47575 * 11 6 5 13 13 O 1.21587 * 120.00012 * 354.85045 * 12 11 6 14 14 N 1.34773 * 119.99407 * 174.85478 * 12 11 6 15 15 C 1.46507 * 119.99639 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46964 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.47234 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99432 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00284 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00040 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47567 * 270.00025 * 21 19 17 23 23 H 1.48497 * 109.46749 * 30.00213 * 21 19 17 24 24 H 1.48502 * 109.46994 * 149.99745 * 21 19 17 25 25 H 1.09001 * 109.47316 * 60.00220 * 1 2 3 26 26 H 1.09002 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47121 * 299.99799 * 1 2 3 28 28 H 1.08996 * 109.47243 * 64.26463 * 5 3 2 29 29 H 1.09000 * 109.47048 * 304.26161 * 5 3 2 30 30 H 1.09006 * 110.72186 * 336.67628 * 8 6 5 31 31 H 1.09003 * 110.72448 * 99.77556 * 8 6 5 32 32 H 1.08996 * 111.00701 * 153.57076 * 9 8 6 33 33 H 1.09000 * 111.00294 * 277.42796 * 9 8 6 34 34 H 1.08997 * 110.39169 * 204.36873 * 10 9 8 35 35 H 1.08999 * 110.23530 * 82.11099 * 10 9 8 36 36 H 0.96994 * 120.00564 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46889 * 59.99932 * 15 14 12 38 38 H 1.09000 * 109.47314 * 300.00128 * 15 14 12 39 39 H 1.09004 * 109.47368 * 60.00232 * 16 15 14 40 40 H 1.09000 * 109.47214 * 300.00194 * 16 15 14 41 41 H 0.96998 * 119.99882 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0003 2.7382 0.1069 7 1 3.5166 3.2062 0.9643 8 6 3.6268 3.4959 -1.1845 9 6 4.8384 4.4420 -1.3951 10 6 6.0105 3.5665 -0.8922 11 7 5.4612 2.8170 0.2523 12 6 6.1788 2.2955 1.2670 13 8 5.6115 1.7808 2.2112 14 7 7.5253 2.3445 1.2348 15 6 8.3054 1.7781 2.3380 16 6 9.7976 1.9629 2.0550 17 6 10.6001 1.3797 3.1895 18 1 10.0961 0.9233 4.0286 19 6 11.9775 1.4297 3.1566 20 7 12.5911 1.9869 2.1355 21 14 12.9722 0.7075 4.5632 22 1 13.2065 1.7526 5.5916 23 1 12.2244 -0.4237 5.1684 24 1 14.2764 0.2192 4.0475 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9521 0.8486 -0.9265 29 1 3.9597 0.7160 0.8485 30 1 3.5269 2.8052 -2.0219 31 1 2.7084 4.0662 -1.0452 32 1 4.9599 4.6928 -2.4488 33 1 4.7404 5.3430 -0.7894 34 1 6.8423 4.1934 -0.5712 35 1 6.3317 2.8804 -1.6759 36 1 7.9779 2.7548 0.4814 37 1 8.0827 0.7152 2.4322 38 1 8.0454 2.2874 3.2660 39 1 10.0206 3.0257 1.9605 40 1 10.0572 1.4533 1.1271 41 1 12.0746 2.3623 1.4053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273578130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = -149.871035 kcal Electronic energy + Delta-G solvation = -22496.906538 eV Core-core repulsion = 18989.595860 eV Total energy + Delta-G solvation = -3507.310678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92913 -41.15848 -38.94409 -37.51892 -36.79904 -35.10881 -33.23545 -32.63475 -30.82089 -29.10234 -27.20238 -26.43576 -24.35020 -23.20929 -22.47548 -21.82831 -20.75746 -19.38359 -18.79687 -18.49055 -18.07550 -17.56284 -17.13744 -16.75516 -16.15242 -15.81382 -15.60733 -15.22854 -15.06416 -14.55873 -14.39572 -14.26566 -14.07267 -13.95569 -13.64927 -13.44504 -13.13852 -12.92562 -12.80105 -12.29751 -12.19733 -12.05887 -11.95556 -11.87685 -11.83146 -11.70373 -11.64811 -11.38950 -10.79400 -10.57808 -10.27886 -9.62442 -8.71622 -6.42425 1.06584 1.33655 1.55171 1.63188 1.80818 1.82357 2.04763 2.55939 3.00362 3.13957 3.46203 3.53242 3.73906 3.86106 4.07533 4.18353 4.25735 4.27333 4.30907 4.34342 4.35331 4.54363 4.60967 4.67495 4.67807 4.75910 4.89054 4.95683 5.07966 5.10395 5.26910 5.28464 5.33646 5.34061 5.42137 5.93972 5.95923 6.14704 6.54090 6.62228 6.90373 7.36955 7.45945 8.71046 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003079 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.387949 B = 9092.642347 C = 9921.757724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.475 3.525 4 O -0.524 6.524 5 C -0.125 4.125 6 C 0.166 3.834 7 H 0.057 0.943 8 C -0.113 4.113 9 C -0.120 4.120 10 C 0.088 3.912 11 N -0.632 5.632 12 C 0.714 3.286 13 O -0.633 6.633 14 N -0.730 5.730 15 C 0.168 3.832 16 C 0.009 3.991 17 C -0.622 4.622 18 H 0.050 0.950 19 C -0.031 4.031 20 N -0.933 5.933 21 Si 1.119 2.881 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.280 1.280 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.059 0.941 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.005 0.995 40 H 0.007 0.993 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.432 1.389 -12.149 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.318 3.682 4 O -0.414 6.414 5 C -0.164 4.164 6 C 0.062 3.938 7 H 0.075 0.925 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.034 4.034 11 N -0.370 5.370 12 C 0.416 3.584 13 O -0.515 6.515 14 N -0.385 5.385 15 C 0.043 3.957 16 C -0.028 4.028 17 C -0.661 4.661 18 H 0.068 0.932 19 C -0.230 4.230 20 N -0.570 5.570 21 Si 0.940 3.060 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.205 1.205 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.078 0.922 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.241 0.759 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.482 1.019 -10.859 23.205 hybrid contribution -1.471 0.463 -0.584 1.649 sum -21.953 1.483 -11.443 24.801 Atomic orbital electron populations 1.23569 0.74475 1.05706 1.02743 1.86518 1.25340 1.32925 1.83704 1.23553 0.91838 0.81370 0.71425 1.90639 1.67635 1.36698 1.46409 1.21781 0.87720 1.00028 1.06828 1.21181 0.78993 0.93315 1.00358 0.92476 1.22685 0.99355 0.98615 0.94405 1.22748 0.92115 0.97207 1.03731 1.22609 0.98160 0.94946 0.87686 1.47665 1.07167 1.58350 1.23831 1.15673 0.81694 0.79129 0.81902 1.90862 1.71032 1.53384 1.36220 1.45229 1.03989 1.63799 1.25521 1.20927 0.90438 0.96618 0.87673 1.19285 0.90849 0.95897 0.96794 1.22325 0.94359 1.42223 1.07144 0.93211 1.27345 0.97284 0.95259 1.03066 1.70893 1.39433 1.37289 1.09403 0.82895 0.74505 0.76388 0.72164 1.19813 1.19684 1.20540 0.91122 0.85302 0.92222 0.85165 0.88822 0.89009 0.89143 0.86530 0.90678 0.90282 0.89372 0.75886 0.93648 0.93972 0.97648 0.97459 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.37 -7.72 10.57 -51.42 -0.54 -8.26 16 3 C 0.47 10.95 7.78 71.23 0.55 11.50 16 4 O -0.52 -13.53 14.52 21.96 0.32 -13.22 16 5 C -0.12 -2.85 5.31 29.85 0.16 -2.69 16 6 C 0.17 3.91 2.49 45.34 0.11 4.02 16 7 H 0.06 1.65 7.96 -2.38 -0.02 1.63 16 8 C -0.11 -1.76 5.47 31.78 0.17 -1.58 16 9 C -0.12 -1.52 7.07 31.91 0.23 -1.29 16 10 C 0.09 1.51 6.46 86.78 0.56 2.07 16 11 N -0.63 -16.55 3.07 -806.30 -2.47 -19.03 16 12 C 0.71 25.62 8.20 179.05 1.47 27.09 16 13 O -0.63 -27.90 15.51 -3.99 -0.06 -27.97 16 14 N -0.73 -26.24 5.51 -478.52 -2.64 -28.88 16 15 C 0.17 7.42 5.61 86.38 0.48 7.91 16 16 C 0.01 0.47 4.40 29.85 0.13 0.60 16 17 C -0.62 -35.31 9.11 25.60 0.23 -35.08 16 18 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 19 C -0.03 -1.78 5.46 84.65 0.46 -1.32 16 20 N -0.93 -56.12 13.65 21.45 0.29 -55.83 16 21 Si 1.12 49.91 29.90 68.60 2.05 51.96 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 26 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 28 H 0.13 2.29 8.00 -2.39 -0.02 2.27 16 29 H 0.09 2.70 6.85 -2.39 -0.02 2.69 16 30 H 0.09 1.13 7.76 -2.38 -0.02 1.11 16 31 H 0.09 1.49 7.67 -2.39 -0.02 1.48 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.35 7.52 -2.39 -0.02 1.34 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.41 12.34 7.09 -92.71 -0.66 11.68 16 37 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.01 0.27 8.01 -2.38 -0.02 0.25 16 40 H 0.01 0.37 8.01 -2.39 -0.02 0.35 16 41 H 0.26 15.51 7.22 -92.71 -0.67 14.84 16 Total: -1.00 -74.36 340.91 3.18 -71.19 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.47 Total: 17.22 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.76 Total: 12.81 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.82 Total: -103.73 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.29 Total: -49.44 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -74.36 3.18 -71.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273578130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.685 kcal (2) G-P(sol) polarization free energy of solvation -74.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds